Wall clock time and date at job start Tue Mar 31 2020 14:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46982 * 2 1 4 4 C 1.35358 * 116.99632 * 180.02562 * 3 2 1 5 5 N 1.30559 * 125.44105 * 180.33780 * 4 3 2 6 6 C 1.36329 * 108.37910 * 180.12860 * 5 4 3 7 7 C 1.47365 * 126.41199 * 179.82757 * 6 5 4 8 8 O 1.21625 * 119.99860 * 179.68849 * 7 6 5 9 9 N 1.34772 * 120.00117 * 359.68521 * 7 6 5 10 10 C 1.46499 * 120.00395 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.44583 * 325.03240 * 10 9 7 12 12 C 1.53036 * 109.46372 * 84.99559 * 10 9 7 13 13 C 1.53191 * 109.31498 * 181.38791 * 12 10 9 14 14 N 1.46921 * 108.77477 * 305.36572 * 13 12 10 15 15 C 1.36936 * 120.63195 * 233.58116 * 14 13 12 16 16 H 1.07998 * 119.99987 * 151.84585 * 15 14 13 17 17 C 1.38816 * 120.00184 * 331.85317 * 15 14 13 18 18 N 1.31612 * 119.99500 * 343.06988 * 17 15 14 19 19 Si 1.86794 * 120.00031 * 163.07164 * 17 15 14 20 20 H 1.48502 * 109.47344 * 89.99648 * 19 17 15 21 21 H 1.48498 * 109.47326 * 210.00064 * 19 17 15 22 22 H 1.48506 * 109.47469 * 329.99946 * 19 17 15 23 23 C 1.46930 * 118.73853 * 53.61265 * 14 13 12 24 24 H 1.09006 * 109.58350 * 186.60457 * 23 14 13 25 25 C 1.52996 * 109.59073 * 66.31658 * 23 14 13 26 26 C 1.53038 * 109.46494 * 205.06973 * 10 9 7 27 27 C 1.35916 * 107.17466 * 359.56018 * 6 5 4 28 28 O 1.34200 * 125.45105 * 359.97370 * 4 3 2 29 29 H 1.08994 * 109.46799 * 300.00093 * 1 2 3 30 30 H 1.08992 * 109.47056 * 60.00283 * 1 2 3 31 31 H 1.09000 * 109.46721 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47184 * 239.99578 * 2 1 3 33 33 H 1.09000 * 109.47372 * 119.99918 * 2 1 3 34 34 H 0.97001 * 120.00156 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.49643 * 61.43950 * 12 10 9 36 36 H 1.09006 * 109.49853 * 301.34279 * 12 10 9 37 37 H 1.09000 * 109.58413 * 65.15193 * 13 12 10 38 38 H 1.09003 * 109.58995 * 185.43479 * 13 12 10 39 39 H 0.97002 * 119.99590 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46772 * 59.99843 * 25 23 14 41 41 H 1.08998 * 109.47446 * 180.02562 * 25 23 14 42 42 H 1.09000 * 109.46787 * 300.00186 * 25 23 14 43 43 H 1.09004 * 109.49870 * 58.65414 * 26 10 9 44 44 H 1.09010 * 109.49248 * 298.56218 * 26 10 9 45 45 H 1.08000 * 126.45906 * 180.26301 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6782 0.0056 6 6 5.3039 2.4524 -0.0002 7 6 6.3630 3.4771 0.0001 8 8 7.5324 3.1429 0.0001 9 7 6.0358 4.7845 0.0002 10 6 7.0886 5.8032 -0.0001 11 1 7.9353 5.4502 0.5888 12 6 7.5422 6.0673 -1.4376 13 6 8.6668 7.1075 -1.4311 14 7 8.2008 8.3033 -0.7160 15 6 8.2699 9.5385 -1.3031 16 1 7.5643 10.3080 -1.0266 17 6 9.2467 9.8015 -2.2537 18 7 10.2948 9.0121 -2.3560 19 14 9.0735 11.2758 -3.3876 20 1 9.7154 12.4598 -2.7618 21 1 9.7337 10.9828 -4.6850 22 1 7.6336 11.5572 -3.6174 23 6 7.6598 8.1488 0.6413 24 1 7.2540 9.1009 0.9835 25 6 8.7725 7.6954 1.5885 26 6 6.5464 7.0971 0.6115 27 6 5.4846 1.1053 -0.0003 28 8 4.2631 0.5427 -0.0006 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.1031 5.0510 -0.0003 35 1 6.7019 6.4439 -2.0208 36 1 7.9065 5.1403 -1.8804 37 1 9.5411 6.6971 -0.9257 38 1 8.9274 7.3705 -2.4563 39 1 10.9775 9.1961 -3.0200 40 1 9.5677 8.4409 1.5981 41 1 8.3691 7.5810 2.5946 42 1 9.1734 6.7409 1.2474 43 1 6.2020 6.9029 1.6273 44 1 5.7154 7.4639 0.0089 45 1 6.4308 0.5847 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947498649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:26 Heat of formation + Delta-G solvation = -27.276063 kcal Electronic energy + Delta-G solvation = -27420.865784 eV Core-core repulsion = 23441.455412 eV Total energy + Delta-G solvation = -3979.410372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.68948 -39.70547 -39.24659 -37.67384 -35.17446 -34.43352 -32.51025 -32.37194 -30.77823 -29.88317 -29.32999 -26.91211 -24.95830 -24.19848 -23.74493 -22.68281 -21.86561 -21.47839 -20.42187 -19.38002 -18.26622 -17.87810 -17.36061 -16.80547 -16.44743 -16.00677 -15.82751 -15.30411 -14.70906 -14.59461 -14.08318 -13.75345 -13.69415 -13.63093 -13.41596 -13.27778 -12.99570 -12.60542 -12.44899 -12.29673 -12.17350 -11.81940 -11.36500 -11.17469 -11.03963 -11.00589 -10.88637 -10.75807 -10.57450 -10.29907 -10.16151 -10.13383 -9.86088 -9.67142 -9.32599 -8.97438 -8.65095 -8.36235 -6.63598 -5.74335 -3.16642 0.92401 1.58244 1.86144 2.41467 3.26007 3.34986 3.40761 3.47801 3.50030 4.25671 4.26716 4.29899 4.52706 4.58542 4.65679 4.85746 5.13638 5.16509 5.24833 5.33579 5.44129 5.44513 5.46034 5.59663 5.65997 5.85675 6.07337 6.13190 6.31779 6.33465 6.36799 6.48258 6.51748 6.65003 6.71233 6.83941 6.91804 6.99997 7.20370 7.25238 7.43780 7.72635 7.77725 7.84497 8.33374 8.50295 9.25934 9.89429 10.46416 11.34028 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.002439 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.758612 B =11478.912726 C =11789.826937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.381 3.619 5 N -0.454 5.454 6 C -0.041 4.041 7 C 0.598 3.402 8 O -0.535 6.535 9 N -0.703 5.703 10 C 0.148 3.852 11 H 0.088 0.912 12 C -0.148 4.148 13 C 0.174 3.826 14 N -0.585 5.585 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.170 3.830 24 H 0.066 0.934 25 C -0.163 4.163 26 C -0.133 4.133 27 C -0.002 4.002 28 O -0.227 6.227 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.405 0.595 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.022 0.978 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.712 -19.664 6.116 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.154 6.154 4 C 0.134 3.866 5 N -0.200 5.200 6 C -0.160 4.160 7 C 0.382 3.618 8 O -0.412 6.412 9 N -0.351 5.351 10 C 0.046 3.954 11 H 0.106 0.894 12 C -0.188 4.188 13 C 0.048 3.952 14 N -0.306 5.306 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.062 3.938 24 H 0.084 0.916 25 C -0.222 4.222 26 C -0.173 4.173 27 C -0.074 4.074 28 O -0.118 6.118 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.240 0.760 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.277 -19.189 5.993 25.867 hybrid contribution -0.177 -0.103 -0.658 0.689 sum -16.454 -19.293 5.335 25.912 Atomic orbital electron populations 1.21812 0.91209 1.03647 1.04270 1.23055 0.96871 0.79395 1.03047 1.86389 1.08976 1.30773 1.89239 1.23299 0.83452 0.81634 0.98169 1.71129 1.04013 1.21478 1.23410 1.21870 0.90201 0.94215 1.09751 1.16663 0.86036 0.81991 0.77117 1.90848 1.17812 1.81397 1.51132 1.46181 1.11432 1.05047 1.72473 1.21199 0.89493 0.86340 0.98411 0.89446 1.22590 1.01402 1.00184 0.94616 1.20734 0.90923 0.84224 0.99306 1.44159 1.72890 1.03635 1.09960 1.19145 1.09575 0.90269 1.19092 0.91719 1.25052 0.94826 0.98055 1.01679 1.70031 1.09024 1.39551 1.35855 0.86328 0.77597 0.82497 0.80512 1.21472 1.21642 1.20532 1.20442 0.91310 0.95317 0.86740 0.91605 1.22303 1.00533 1.01663 0.97689 1.22306 1.00228 0.95328 0.99392 1.24983 0.85750 0.92953 1.03733 1.84379 1.16287 1.39175 1.71998 0.90939 0.90908 0.89445 0.90785 0.90813 0.76037 0.92541 0.92858 0.96017 0.89308 0.93657 0.92592 0.94482 0.93188 0.92470 0.91716 0.74729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 10.28 37.16 0.38 -0.16 16 2 C 0.05 0.28 6.38 37.16 0.24 0.52 16 3 O -0.25 -2.37 10.19 -41.00 -0.42 -2.79 16 4 C 0.38 4.39 8.98 52.22 0.47 4.86 16 5 N -0.45 -6.22 11.10 -11.71 -0.13 -6.35 16 6 C -0.04 -0.56 6.99 -82.99 -0.58 -1.14 16 7 C 0.60 9.67 7.78 -12.55 -0.10 9.57 16 8 O -0.53 -10.01 16.55 5.26 0.09 -9.92 16 9 N -0.70 -11.15 5.07 -54.86 -0.28 -11.42 16 10 C 0.15 2.67 2.21 -67.89 -0.15 2.52 16 11 H 0.09 1.72 5.94 -51.92 -0.31 1.41 16 12 C -0.15 -3.01 5.65 -26.61 -0.15 -3.16 16 13 C 0.17 4.23 4.89 -3.71 -0.02 4.22 16 14 N -0.58 -14.41 2.70 -164.78 -0.44 -14.86 16 15 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 16 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 17 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 18 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 19 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.17 3.49 3.28 -67.60 -0.22 3.27 16 24 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 25 C -0.16 -3.15 9.03 37.16 0.34 -2.82 16 26 C -0.13 -2.30 5.03 -26.61 -0.13 -2.44 16 27 C 0.00 -0.02 11.93 29.90 0.36 0.33 16 28 O -0.23 -2.29 10.20 -17.74 -0.18 -2.47 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.40 5.84 8.33 -40.82 -0.34 5.50 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 38 H 0.09 2.42 6.07 -51.93 -0.31 2.10 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 1.00 5.74 -51.93 -0.30 0.70 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 45 H 0.24 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -32.30 370.17 -6.68 -38.98 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.68 Total: 3.53 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 0.20 Total: 8.58 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.23 Total: -58.22 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.51 Total: -15.18 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.30 -6.68 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947498649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.701 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds