Wall clock time and date at job start Tue Mar 31 2020 14:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46982 * 2 1 4 4 C 1.35358 * 116.99632 * 180.02562 * 3 2 1 5 5 N 1.30559 * 125.44105 * 180.33780 * 4 3 2 6 6 C 1.36329 * 108.37910 * 180.12860 * 5 4 3 7 7 C 1.47365 * 126.41199 * 179.82757 * 6 5 4 8 8 O 1.21625 * 119.99860 * 179.68849 * 7 6 5 9 9 N 1.34772 * 120.00117 * 359.68521 * 7 6 5 10 10 C 1.46499 * 120.00395 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.44583 * 325.03240 * 10 9 7 12 12 C 1.53036 * 109.46372 * 84.99559 * 10 9 7 13 13 C 1.53191 * 109.31498 * 181.38791 * 12 10 9 14 14 N 1.46921 * 108.77477 * 305.36572 * 13 12 10 15 15 C 1.36936 * 120.63195 * 233.58116 * 14 13 12 16 16 H 1.07998 * 119.99987 * 151.84585 * 15 14 13 17 17 C 1.38816 * 120.00184 * 331.85317 * 15 14 13 18 18 N 1.31612 * 119.99500 * 343.06988 * 17 15 14 19 19 Si 1.86794 * 120.00031 * 163.07164 * 17 15 14 20 20 H 1.48502 * 109.47344 * 89.99648 * 19 17 15 21 21 H 1.48498 * 109.47326 * 210.00064 * 19 17 15 22 22 H 1.48506 * 109.47469 * 329.99946 * 19 17 15 23 23 C 1.46930 * 118.73853 * 53.61265 * 14 13 12 24 24 H 1.09006 * 109.58350 * 186.60457 * 23 14 13 25 25 C 1.52996 * 109.59073 * 66.31658 * 23 14 13 26 26 C 1.53038 * 109.46494 * 205.06973 * 10 9 7 27 27 C 1.35916 * 107.17466 * 359.56018 * 6 5 4 28 28 O 1.34200 * 125.45105 * 359.97370 * 4 3 2 29 29 H 1.08994 * 109.46799 * 300.00093 * 1 2 3 30 30 H 1.08992 * 109.47056 * 60.00283 * 1 2 3 31 31 H 1.09000 * 109.46721 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47184 * 239.99578 * 2 1 3 33 33 H 1.09000 * 109.47372 * 119.99918 * 2 1 3 34 34 H 0.97001 * 120.00156 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.49643 * 61.43950 * 12 10 9 36 36 H 1.09006 * 109.49853 * 301.34279 * 12 10 9 37 37 H 1.09000 * 109.58413 * 65.15193 * 13 12 10 38 38 H 1.09003 * 109.58995 * 185.43479 * 13 12 10 39 39 H 0.97002 * 119.99590 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46772 * 59.99843 * 25 23 14 41 41 H 1.08998 * 109.47446 * 180.02562 * 25 23 14 42 42 H 1.09000 * 109.46787 * 300.00186 * 25 23 14 43 43 H 1.09004 * 109.49870 * 58.65414 * 26 10 9 44 44 H 1.09010 * 109.49248 * 298.56218 * 26 10 9 45 45 H 1.08000 * 126.45906 * 180.26301 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6782 0.0056 6 6 5.3039 2.4524 -0.0002 7 6 6.3630 3.4771 0.0001 8 8 7.5324 3.1429 0.0001 9 7 6.0358 4.7845 0.0002 10 6 7.0886 5.8032 -0.0001 11 1 7.9353 5.4502 0.5888 12 6 7.5422 6.0673 -1.4376 13 6 8.6668 7.1075 -1.4311 14 7 8.2008 8.3033 -0.7160 15 6 8.2699 9.5385 -1.3031 16 1 7.5643 10.3080 -1.0266 17 6 9.2467 9.8015 -2.2537 18 7 10.2948 9.0121 -2.3560 19 14 9.0735 11.2758 -3.3876 20 1 9.7154 12.4598 -2.7618 21 1 9.7337 10.9828 -4.6850 22 1 7.6336 11.5572 -3.6174 23 6 7.6598 8.1488 0.6413 24 1 7.2540 9.1009 0.9835 25 6 8.7725 7.6954 1.5885 26 6 6.5464 7.0971 0.6115 27 6 5.4846 1.1053 -0.0003 28 8 4.2631 0.5427 -0.0006 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.1031 5.0510 -0.0003 35 1 6.7019 6.4439 -2.0208 36 1 7.9065 5.1403 -1.8804 37 1 9.5411 6.6971 -0.9257 38 1 8.9274 7.3705 -2.4563 39 1 10.9775 9.1961 -3.0200 40 1 9.5677 8.4409 1.5981 41 1 8.3691 7.5810 2.5946 42 1 9.1734 6.7409 1.2474 43 1 6.2020 6.9029 1.6273 44 1 5.7154 7.4639 0.0089 45 1 6.4308 0.5847 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947498649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:26 Heat of formation + Delta-G solvation = -52.117606 kcal Electronic energy + Delta-G solvation = -27421.942995 eV Core-core repulsion = 23441.455412 eV Total energy + Delta-G solvation = -3980.487583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.56199 -41.01843 -39.98290 -39.26388 -36.16157 -35.97559 -34.27394 -32.90542 -32.45119 -31.38769 -30.51149 -28.57018 -26.40118 -25.48022 -24.54350 -23.77543 -23.51844 -22.75875 -21.59036 -20.49394 -19.78414 -18.78184 -18.65575 -18.21281 -17.43190 -17.32065 -16.60729 -16.59635 -16.06361 -15.91559 -15.65386 -15.49172 -15.12889 -14.76266 -14.48881 -14.29826 -14.11726 -13.92336 -13.87645 -13.56433 -13.13330 -12.92613 -12.66993 -12.61600 -12.56448 -12.55139 -12.28476 -12.05488 -12.01389 -11.93047 -11.79245 -11.78410 -11.49139 -11.37629 -10.99025 -10.53792 -10.09623 -9.75198 -8.65885 -7.83932 -5.28575 0.00958 0.82356 0.89604 1.47802 1.49750 1.59040 1.64171 2.08040 2.18679 2.53467 3.29067 3.33712 3.64591 3.71537 3.83881 3.93317 3.96115 4.07059 4.09621 4.27051 4.29626 4.38063 4.45569 4.53008 4.63548 4.72560 4.77031 4.83631 4.86903 4.87543 4.91037 5.08851 5.12894 5.18216 5.19323 5.34792 5.46339 5.46764 5.57214 5.63203 5.70486 5.78197 6.29932 6.43288 6.58603 7.09253 7.18085 7.89850 8.42257 9.22802 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.002439 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.758612 B =11478.912726 C =11789.826937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.256 6.256 4 C 0.385 3.615 5 N -0.482 5.482 6 C -0.074 4.074 7 C 0.600 3.400 8 O -0.566 6.566 9 N -0.696 5.696 10 C 0.161 3.839 11 H 0.073 0.927 12 C -0.133 4.133 13 C 0.186 3.814 14 N -0.600 5.600 15 C -0.257 4.257 16 H 0.070 0.930 17 C -0.053 4.053 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.270 1.270 23 C 0.161 3.839 24 H 0.070 0.930 25 C -0.153 4.153 26 C -0.119 4.119 27 C 0.029 3.971 28 O -0.215 6.215 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.414 0.586 35 H 0.056 0.944 36 H 0.048 0.952 37 H -0.004 1.004 38 H 0.054 0.946 39 H 0.248 0.752 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.128 -21.044 7.064 29.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.165 6.165 4 C 0.138 3.862 5 N -0.229 5.229 6 C -0.192 4.192 7 C 0.386 3.614 8 O -0.445 6.445 9 N -0.346 5.346 10 C 0.057 3.943 11 H 0.091 0.909 12 C -0.173 4.173 13 C 0.059 3.941 14 N -0.322 5.322 15 C -0.387 4.387 16 H 0.088 0.912 17 C -0.248 4.248 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.212 1.212 21 H -0.223 1.223 22 H -0.195 1.195 23 C 0.054 3.946 24 H 0.088 0.912 25 C -0.212 4.212 26 C -0.159 4.159 27 C -0.043 4.043 28 O -0.105 6.105 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.251 0.749 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.014 0.986 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -18.761 -20.578 6.969 28.705 hybrid contribution 0.497 0.212 -0.902 1.052 sum -18.263 -20.366 6.067 28.020 Atomic orbital electron populations 1.21863 0.89809 1.05083 1.03857 1.23448 0.97934 0.77743 1.04175 1.86426 1.07805 1.33328 1.88918 1.23326 0.84201 0.81414 0.97218 1.71013 1.04159 1.22862 1.24820 1.21494 0.89858 0.94601 1.13233 1.16929 0.86233 0.82259 0.75973 1.90830 1.19281 1.81878 1.52560 1.45959 1.11252 1.04761 1.72590 1.20850 0.89867 0.87407 0.96199 0.90856 1.22353 0.99791 0.98513 0.96690 1.20415 0.91560 0.85196 0.96923 1.44364 1.73017 1.02901 1.11912 1.19500 1.09084 0.91147 1.18972 0.91241 1.25802 0.94752 1.00860 1.03382 1.70193 1.09874 1.41489 1.36543 0.85316 0.77775 0.79394 0.78183 1.21200 1.22267 1.19477 1.20694 0.92315 0.96798 0.84777 0.91202 1.22178 0.99485 1.00028 0.99507 1.22146 0.98817 0.93541 1.01376 1.25562 0.86642 0.92085 1.00051 1.84428 1.15965 1.38553 1.71576 0.91267 0.91400 0.87025 0.89753 0.89583 0.74944 0.92549 0.93320 0.98582 0.92809 0.94283 0.95088 0.90723 0.94395 0.89189 0.91228 0.71774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 71.98 0.74 0.00 16 2 C 0.04 0.35 6.38 71.98 0.46 0.81 16 3 O -0.26 -4.49 10.19 -64.28 -0.66 -5.14 16 4 C 0.39 8.14 8.98 130.43 1.17 9.31 16 5 N -0.48 -12.51 11.10 -419.37 -4.65 -17.16 16 6 C -0.07 -1.91 6.99 40.31 0.28 -1.63 16 7 C 0.60 18.85 7.78 86.65 0.67 19.52 16 8 O -0.57 -20.94 16.55 -4.11 -0.07 -21.01 16 9 N -0.70 -21.28 5.07 -445.73 -2.26 -23.54 16 10 C 0.16 5.68 2.21 45.02 0.10 5.78 16 11 H 0.07 2.86 5.94 -2.38 -0.01 2.84 16 12 C -0.13 -5.51 5.65 30.67 0.17 -5.34 16 13 C 0.19 9.36 4.89 86.36 0.42 9.78 16 14 N -0.60 -29.97 2.70 -675.24 -1.82 -31.79 16 15 C -0.26 -14.09 9.58 84.03 0.81 -13.28 16 16 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 17 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 18 N -0.93 -56.42 11.19 21.65 0.24 -56.18 16 19 Si 0.96 45.51 29.59 68.60 2.03 47.54 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.16 6.46 3.28 44.97 0.15 6.61 16 24 H 0.07 2.74 7.93 -2.38 -0.02 2.72 16 25 C -0.15 -5.84 9.03 71.98 0.65 -5.19 16 26 C -0.12 -3.90 5.03 30.67 0.15 -3.75 16 27 C 0.03 0.55 11.93 67.28 0.80 1.35 16 28 O -0.21 -3.76 10.20 18.95 0.19 -3.57 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.41 11.27 8.33 -92.71 -0.77 10.50 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.00 -0.21 7.50 -2.39 -0.02 -0.23 16 38 H 0.05 3.07 6.07 -2.39 -0.01 3.06 16 39 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.04 1.52 5.74 -2.39 -0.01 1.51 16 43 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.27 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -71.82 370.17 0.24 -71.58 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.24 Total: 17.85 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 7.00 Total: 21.42 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -8.50 Total: -128.67 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.53 Total: -29.72 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.82 0.24 -71.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947498649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.464 kcal (2) G-P(sol) polarization free energy of solvation -71.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds