Wall clock time and date at job start Tue Mar 31 2020 14:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46896 * 2 1 4 4 C 1.35357 * 116.99990 * 180.02562 * 3 2 1 5 5 N 1.30550 * 125.44638 * 179.97438 * 4 3 2 6 6 C 1.36333 * 108.38090 * 180.02562 * 5 4 3 7 7 C 1.47368 * 126.40928 * 180.02562 * 6 5 4 8 8 O 1.21627 * 119.99780 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00545 * 359.74969 * 7 6 5 10 10 C 1.46500 * 120.00308 * 180.02562 * 9 7 6 11 11 H 1.08993 * 109.46018 * 325.00077 * 10 9 7 12 12 C 1.53040 * 109.46000 * 84.97624 * 10 9 7 13 13 C 1.53192 * 109.31211 * 181.40198 * 12 10 9 14 14 N 1.46934 * 108.76182 * 305.33913 * 13 12 10 15 15 C 1.36935 * 120.62638 * 233.59553 * 14 13 12 16 16 H 1.08006 * 119.99373 * 150.18106 * 15 14 13 17 17 C 1.38810 * 120.00300 * 330.17974 * 15 14 13 18 18 N 1.31613 * 119.99980 * 344.49595 * 17 15 14 19 19 Si 1.86803 * 119.99706 * 164.49122 * 17 15 14 20 20 H 1.48502 * 109.46657 * 60.00444 * 19 17 15 21 21 H 1.48501 * 109.46839 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47485 * 300.00480 * 19 17 15 23 23 C 1.46919 * 118.73683 * 53.61751 * 14 13 12 24 24 H 1.09006 * 109.58604 * 66.17850 * 23 14 13 25 25 C 1.53004 * 109.58721 * 186.60321 * 23 14 13 26 26 C 1.53042 * 109.45904 * 205.02698 * 10 9 7 27 27 C 1.35909 * 107.17308 * 0.26581 * 6 5 4 28 28 O 1.34197 * 125.44672 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.47295 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47156 * 299.99717 * 1 2 3 31 31 H 1.08997 * 109.47209 * 60.00148 * 1 2 3 32 32 H 1.09002 * 109.47156 * 240.00283 * 2 1 3 33 33 H 1.08997 * 109.47209 * 119.99852 * 2 1 3 34 34 H 0.97000 * 119.99615 * 0.02562 * 9 7 6 35 35 H 1.09005 * 109.49432 * 301.33828 * 12 10 9 36 36 H 1.09000 * 109.50264 * 61.43028 * 12 10 9 37 37 H 1.08995 * 109.58412 * 185.56127 * 13 12 10 38 38 H 1.08991 * 109.71595 * 65.19621 * 13 12 10 39 39 H 0.97004 * 119.99944 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.47297 * 179.29144 * 25 23 14 41 41 H 1.09002 * 109.46958 * 299.29190 * 25 23 14 42 42 H 1.09002 * 109.46824 * 59.28845 * 25 23 14 43 43 H 1.09003 * 109.49944 * 298.56826 * 26 10 9 44 44 H 1.09000 * 109.49667 * 58.65736 * 26 10 9 45 45 H 1.08004 * 126.45377 * 179.73655 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6783 -0.0011 6 6 5.3039 2.4524 -0.0021 7 6 6.3629 3.4772 -0.0025 8 8 7.5324 3.1430 -0.0039 9 7 6.0357 4.7846 -0.0069 10 6 7.0886 5.8032 -0.0078 11 1 7.9338 5.4524 0.5843 12 6 7.5457 6.0628 -1.4451 13 6 8.6706 7.1026 -1.4391 14 7 8.2026 8.3010 -0.7293 15 6 8.2732 9.5341 -1.3205 16 1 7.5504 10.2960 -1.0684 17 6 9.2737 9.8049 -2.2438 18 7 10.3208 9.0123 -2.3310 19 14 9.1338 11.2942 -3.3628 20 1 9.0628 12.5275 -2.5386 21 1 10.3228 11.3601 -4.2500 22 1 7.9050 11.1793 -4.1885 23 6 7.6580 8.1511 0.6270 24 1 8.4484 7.8279 1.3045 25 6 7.0871 9.4891 1.1013 26 6 6.5447 7.0992 0.5979 27 6 5.4845 1.1054 -0.0081 28 8 4.2630 0.5429 -0.0016 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.1031 5.0511 -0.0094 35 1 7.9111 5.1343 -1.8839 36 1 6.7068 6.4374 -2.0317 37 1 8.9320 7.3640 -2.4644 38 1 9.5450 6.6955 -0.9315 39 1 11.0198 9.2014 -2.9765 40 1 6.6723 9.3727 2.1025 41 1 7.8807 10.2360 1.1213 42 1 6.3017 9.8117 0.4178 43 1 5.7153 7.4640 -0.0081 44 1 6.1975 6.9085 1.6134 45 1 6.4308 0.5849 -0.0145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947498650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:30 Heat of formation + Delta-G solvation = -27.169946 kcal Electronic energy + Delta-G solvation = -27311.389796 eV Core-core repulsion = 23331.984025 eV Total energy + Delta-G solvation = -3979.405771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.69196 -39.68094 -39.23547 -37.58665 -35.17601 -34.53322 -32.46194 -32.32231 -31.25712 -29.87926 -29.31233 -26.36745 -25.22331 -24.33718 -23.79475 -22.66884 -21.85763 -21.01568 -20.07820 -19.58689 -18.87256 -17.87967 -17.37279 -16.63425 -16.22914 -16.00233 -15.75232 -15.30007 -15.02116 -14.60110 -14.05806 -13.88926 -13.67265 -13.49927 -13.41672 -13.29379 -13.19039 -12.76350 -12.65208 -12.29903 -11.82583 -11.54933 -11.19883 -11.14864 -11.07714 -11.01679 -10.87843 -10.84986 -10.61152 -10.28822 -10.17511 -10.02668 -9.97154 -9.68626 -9.36312 -8.97537 -8.64237 -8.37008 -6.58471 -5.72441 -3.16434 0.92286 1.58138 1.86032 2.41335 3.25093 3.34941 3.42079 3.47918 3.48731 4.25599 4.26659 4.29590 4.53568 4.58465 4.65555 4.85602 5.13566 5.16431 5.24807 5.32184 5.43545 5.45790 5.46645 5.59321 5.64231 5.84236 6.04431 6.21733 6.29927 6.34268 6.37589 6.46786 6.48429 6.57766 6.69732 6.84009 6.92061 7.07825 7.15707 7.24615 7.43326 7.72127 7.77154 7.87310 8.32988 8.52359 9.27455 9.91091 10.48703 11.36315 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.002401 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.775418 B =11660.869835 C =11871.920469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.381 3.619 5 N -0.454 5.454 6 C -0.041 4.041 7 C 0.598 3.402 8 O -0.534 6.534 9 N -0.702 5.702 10 C 0.150 3.850 11 H 0.084 0.916 12 C -0.147 4.147 13 C 0.176 3.824 14 N -0.587 5.587 15 C -0.250 4.250 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.172 3.828 24 H 0.027 0.973 25 C -0.135 4.135 26 C -0.134 4.134 27 C -0.002 4.002 28 O -0.227 6.227 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.405 0.595 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.021 0.979 39 H 0.254 0.746 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.146 -19.163 6.024 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.154 6.154 4 C 0.135 3.865 5 N -0.200 5.200 6 C -0.160 4.160 7 C 0.382 3.618 8 O -0.412 6.412 9 N -0.351 5.351 10 C 0.047 3.953 11 H 0.102 0.898 12 C -0.187 4.187 13 C 0.049 3.951 14 N -0.311 5.311 15 C -0.380 4.380 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.064 3.936 24 H 0.045 0.955 25 C -0.193 4.193 26 C -0.174 4.174 27 C -0.074 4.074 28 O -0.118 6.118 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.240 0.760 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.697 -18.687 5.919 25.749 hybrid contribution -0.209 -0.114 -0.689 0.729 sum -16.906 -18.802 5.230 25.820 Atomic orbital electron populations 1.21814 0.91208 1.03650 1.04270 1.23056 0.96871 0.79393 1.03046 1.86388 1.08976 1.30776 1.89239 1.23294 0.83452 0.81633 0.98169 1.71126 1.04013 1.21487 1.23414 1.21867 0.90194 0.94214 1.09765 1.16668 0.86038 0.81990 0.77111 1.90851 1.17808 1.81397 1.51104 1.46171 1.11411 1.05026 1.72505 1.21137 0.89406 0.86337 0.98442 0.89816 1.22586 1.01371 1.00211 0.94573 1.20732 0.90877 0.84126 0.99335 1.44157 1.72752 1.03724 1.10448 1.19114 1.07905 0.90861 1.20137 0.91335 1.25108 0.94872 0.97971 1.01680 1.70012 1.08402 1.39343 1.36897 0.86403 0.76889 0.82808 0.80833 1.20937 1.21740 1.21105 1.20361 0.92354 0.92601 0.88273 0.95505 1.21788 1.01072 0.98018 0.98388 1.22392 1.00538 0.95129 0.99373 1.24983 0.85754 0.92952 1.03713 1.84378 1.16287 1.39177 1.71997 0.89443 0.90939 0.90909 0.90788 0.90809 0.76010 0.92817 0.92529 0.89381 0.96061 0.93638 0.94296 0.91886 0.92742 0.91653 0.92567 0.74720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 10.28 37.16 0.38 -0.16 16 2 C 0.05 0.28 6.38 37.16 0.24 0.52 16 3 O -0.25 -2.37 10.19 -40.99 -0.42 -2.79 16 4 C 0.38 4.39 8.98 52.22 0.47 4.86 16 5 N -0.45 -6.23 11.10 -11.72 -0.13 -6.36 16 6 C -0.04 -0.57 6.99 -82.99 -0.58 -1.15 16 7 C 0.60 9.68 7.78 -12.55 -0.10 9.58 16 8 O -0.53 -10.03 16.55 5.25 0.09 -9.94 16 9 N -0.70 -11.16 5.07 -54.86 -0.28 -11.44 16 10 C 0.15 2.72 2.41 -67.89 -0.16 2.55 16 11 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 12 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 13 C 0.18 4.29 5.28 -3.71 -0.02 4.27 16 14 N -0.59 -14.54 2.99 -164.78 -0.49 -15.03 16 15 C -0.25 -6.72 8.58 -15.06 -0.13 -6.85 16 16 H 0.07 1.79 6.23 -52.48 -0.33 1.46 16 17 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 18 N -0.90 -26.34 11.23 55.49 0.62 -25.72 16 19 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 C 0.17 3.55 3.50 -67.60 -0.24 3.31 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 25 C -0.14 -2.53 7.95 37.16 0.30 -2.23 16 26 C -0.13 -2.34 4.84 -26.61 -0.13 -2.47 16 27 C 0.00 -0.02 11.93 29.90 0.36 0.34 16 28 O -0.23 -2.29 10.20 -17.73 -0.18 -2.47 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.41 5.85 8.33 -40.82 -0.34 5.51 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 1.27 7.67 -51.93 -0.40 0.88 16 42 H 0.05 1.02 7.40 -51.93 -0.38 0.64 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.24 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -32.33 371.14 -6.87 -39.20 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.79 Total: 2.84 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 0.15 Total: 9.38 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.28 Total: -58.55 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.51 Total: -15.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.33 -6.87 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947498650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.033 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds