Wall clock time and date at job start Tue Mar 31 2020 14:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46896 * 2 1 4 4 C 1.35357 * 116.99990 * 180.02562 * 3 2 1 5 5 N 1.30550 * 125.44638 * 179.97438 * 4 3 2 6 6 C 1.36333 * 108.38090 * 180.02562 * 5 4 3 7 7 C 1.47368 * 126.40928 * 180.02562 * 6 5 4 8 8 O 1.21627 * 119.99780 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00545 * 359.74969 * 7 6 5 10 10 C 1.46500 * 120.00308 * 180.02562 * 9 7 6 11 11 H 1.08993 * 109.46018 * 325.00077 * 10 9 7 12 12 C 1.53040 * 109.46000 * 84.97624 * 10 9 7 13 13 C 1.53192 * 109.31211 * 181.40198 * 12 10 9 14 14 N 1.46934 * 108.76182 * 305.33913 * 13 12 10 15 15 C 1.36935 * 120.62638 * 233.59553 * 14 13 12 16 16 H 1.08006 * 119.99373 * 150.18106 * 15 14 13 17 17 C 1.38810 * 120.00300 * 330.17974 * 15 14 13 18 18 N 1.31613 * 119.99980 * 344.49595 * 17 15 14 19 19 Si 1.86803 * 119.99706 * 164.49122 * 17 15 14 20 20 H 1.48502 * 109.46657 * 60.00444 * 19 17 15 21 21 H 1.48501 * 109.46839 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47485 * 300.00480 * 19 17 15 23 23 C 1.46919 * 118.73683 * 53.61751 * 14 13 12 24 24 H 1.09006 * 109.58604 * 66.17850 * 23 14 13 25 25 C 1.53004 * 109.58721 * 186.60321 * 23 14 13 26 26 C 1.53042 * 109.45904 * 205.02698 * 10 9 7 27 27 C 1.35909 * 107.17308 * 0.26581 * 6 5 4 28 28 O 1.34197 * 125.44672 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.47295 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47156 * 299.99717 * 1 2 3 31 31 H 1.08997 * 109.47209 * 60.00148 * 1 2 3 32 32 H 1.09002 * 109.47156 * 240.00283 * 2 1 3 33 33 H 1.08997 * 109.47209 * 119.99852 * 2 1 3 34 34 H 0.97000 * 119.99615 * 0.02562 * 9 7 6 35 35 H 1.09005 * 109.49432 * 301.33828 * 12 10 9 36 36 H 1.09000 * 109.50264 * 61.43028 * 12 10 9 37 37 H 1.08995 * 109.58412 * 185.56127 * 13 12 10 38 38 H 1.08991 * 109.71595 * 65.19621 * 13 12 10 39 39 H 0.97004 * 119.99944 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.47297 * 179.29144 * 25 23 14 41 41 H 1.09002 * 109.46958 * 299.29190 * 25 23 14 42 42 H 1.09002 * 109.46824 * 59.28845 * 25 23 14 43 43 H 1.09003 * 109.49944 * 298.56826 * 26 10 9 44 44 H 1.09000 * 109.49667 * 58.65736 * 26 10 9 45 45 H 1.08004 * 126.45377 * 179.73655 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6783 -0.0011 6 6 5.3039 2.4524 -0.0021 7 6 6.3629 3.4772 -0.0025 8 8 7.5324 3.1430 -0.0039 9 7 6.0357 4.7846 -0.0069 10 6 7.0886 5.8032 -0.0078 11 1 7.9338 5.4524 0.5843 12 6 7.5457 6.0628 -1.4451 13 6 8.6706 7.1026 -1.4391 14 7 8.2026 8.3010 -0.7293 15 6 8.2732 9.5341 -1.3205 16 1 7.5504 10.2960 -1.0684 17 6 9.2737 9.8049 -2.2438 18 7 10.3208 9.0123 -2.3310 19 14 9.1338 11.2942 -3.3628 20 1 9.0628 12.5275 -2.5386 21 1 10.3228 11.3601 -4.2500 22 1 7.9050 11.1793 -4.1885 23 6 7.6580 8.1511 0.6270 24 1 8.4484 7.8279 1.3045 25 6 7.0871 9.4891 1.1013 26 6 6.5447 7.0992 0.5979 27 6 5.4845 1.1054 -0.0081 28 8 4.2630 0.5429 -0.0016 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.1031 5.0511 -0.0094 35 1 7.9111 5.1343 -1.8839 36 1 6.7068 6.4374 -2.0317 37 1 8.9320 7.3640 -2.4644 38 1 9.5450 6.6955 -0.9315 39 1 11.0198 9.2014 -2.9765 40 1 6.6723 9.3727 2.1025 41 1 7.8807 10.2360 1.1213 42 1 6.3017 9.8117 0.4178 43 1 5.7153 7.4640 -0.0081 44 1 6.1975 6.9085 1.6134 45 1 6.4308 0.5849 -0.0145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947498650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:29 Heat of formation + Delta-G solvation = -52.218796 kcal Electronic energy + Delta-G solvation = -27312.475995 eV Core-core repulsion = 23331.984025 eV Total energy + Delta-G solvation = -3980.491970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.56765 -40.98381 -39.97791 -39.20942 -36.19896 -36.03132 -34.19443 -33.04219 -32.77765 -31.34509 -30.50712 -28.01450 -26.85072 -25.48443 -24.53814 -23.80052 -23.31259 -22.28980 -21.46662 -21.04488 -20.04460 -18.66165 -18.53287 -18.11785 -17.43252 -17.23519 -16.79142 -16.60953 -16.07403 -15.93837 -15.72516 -15.52597 -15.12543 -14.82509 -14.63021 -14.45566 -14.29071 -13.92463 -13.56556 -13.32298 -12.93743 -12.71990 -12.69060 -12.66990 -12.61086 -12.54716 -12.34973 -12.10938 -11.95962 -11.84709 -11.79592 -11.71107 -11.50924 -11.49431 -11.07100 -10.52526 -10.11638 -9.75935 -8.61843 -7.81705 -5.28148 0.00392 0.81959 0.89184 1.48746 1.51177 1.57375 1.63549 2.06294 2.17892 2.54544 3.28932 3.35315 3.62102 3.71107 3.85914 3.93241 3.95931 4.05728 4.07762 4.26831 4.27562 4.37016 4.40432 4.62191 4.62689 4.72961 4.76990 4.81273 4.85457 4.87479 4.96297 5.07575 5.09298 5.16827 5.19253 5.40311 5.45088 5.53872 5.56954 5.62863 5.73134 5.75186 6.29130 6.45615 6.57787 7.08144 7.19480 7.91011 8.44401 9.25657 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.002401 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.775418 B =11660.869835 C =11871.920469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.256 6.256 4 C 0.386 3.614 5 N -0.482 5.482 6 C -0.074 4.074 7 C 0.600 3.400 8 O -0.566 6.566 9 N -0.696 5.696 10 C 0.161 3.839 11 H 0.066 0.934 12 C -0.131 4.131 13 C 0.184 3.816 14 N -0.603 5.603 15 C -0.249 4.249 16 H 0.078 0.922 17 C -0.057 4.057 18 N -0.939 5.939 19 Si 0.964 3.036 20 H -0.274 1.274 21 H -0.299 1.299 22 H -0.279 1.279 23 C 0.161 3.839 24 H 0.016 0.984 25 C -0.127 4.127 26 C -0.119 4.119 27 C 0.030 3.970 28 O -0.214 6.214 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.054 0.946 38 H -0.007 1.007 39 H 0.247 0.753 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.831 -20.329 6.922 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.165 6.165 4 C 0.139 3.861 5 N -0.229 5.229 6 C -0.192 4.192 7 C 0.386 3.614 8 O -0.446 6.446 9 N -0.345 5.345 10 C 0.057 3.943 11 H 0.085 0.915 12 C -0.171 4.171 13 C 0.058 3.942 14 N -0.327 5.327 15 C -0.379 4.379 16 H 0.096 0.904 17 C -0.251 4.251 18 N -0.586 5.586 19 Si 0.793 3.207 20 H -0.199 1.199 21 H -0.226 1.226 22 H -0.205 1.205 23 C 0.054 3.946 24 H 0.033 0.967 25 C -0.184 4.184 26 C -0.159 4.159 27 C -0.043 4.043 28 O -0.105 6.105 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.251 0.749 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.011 0.989 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -19.453 -19.858 6.843 28.628 hybrid contribution 0.558 0.117 -0.907 1.071 sum -18.896 -19.740 5.936 27.964 Atomic orbital electron populations 1.21865 0.89802 1.05086 1.03859 1.23450 0.97938 0.77738 1.04177 1.86425 1.07792 1.33335 1.88914 1.23320 0.84204 0.81407 0.97199 1.71009 1.04137 1.22871 1.24834 1.21480 0.89852 0.94583 1.13272 1.16941 0.86240 0.82263 0.75952 1.90833 1.19316 1.81883 1.52555 1.45937 1.11206 1.04716 1.72623 1.20791 0.89743 0.87484 0.96281 0.91535 1.22329 0.99734 0.98505 0.96560 1.20440 0.91490 0.85250 0.97039 1.44414 1.72862 1.03124 1.12292 1.19485 1.07339 0.91587 1.19513 0.90422 1.25880 0.94862 1.00851 1.03550 1.70186 1.09284 1.41354 1.37753 0.85389 0.76429 0.80013 0.78915 1.19920 1.22590 1.20516 1.20629 0.93017 0.95006 0.85915 0.96668 1.21707 1.00236 0.95961 1.00500 1.22205 0.99096 0.93268 1.01324 1.25560 0.86649 0.92077 1.00014 1.84428 1.15958 1.38555 1.71574 0.87025 0.91264 0.91396 0.89752 0.89580 0.74879 0.93246 0.92388 0.92716 0.98908 0.94404 0.90483 0.93999 0.92763 0.90985 0.89372 0.71773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 71.98 0.74 0.01 16 2 C 0.04 0.35 6.38 71.98 0.46 0.81 16 3 O -0.26 -4.48 10.19 -64.26 -0.65 -5.14 16 4 C 0.39 8.15 8.98 130.43 1.17 9.32 16 5 N -0.48 -12.52 11.10 -419.40 -4.65 -17.18 16 6 C -0.07 -1.92 6.99 40.31 0.28 -1.63 16 7 C 0.60 18.97 7.78 86.65 0.67 19.64 16 8 O -0.57 -21.14 16.55 -4.12 -0.07 -21.21 16 9 N -0.70 -21.39 5.07 -445.72 -2.26 -23.65 16 10 C 0.16 5.77 2.41 45.02 0.11 5.88 16 11 H 0.07 2.65 7.58 -2.39 -0.02 2.63 16 12 C -0.13 -5.44 5.65 30.67 0.17 -5.27 16 13 C 0.18 9.39 5.28 86.36 0.46 9.85 16 14 N -0.60 -30.31 2.99 -675.23 -2.02 -32.33 16 15 C -0.25 -13.48 8.58 84.03 0.72 -12.76 16 16 H 0.08 4.00 6.23 -2.91 -0.02 3.98 16 17 C -0.06 -3.20 4.94 84.86 0.42 -2.78 16 18 N -0.94 -57.00 11.23 21.65 0.24 -56.76 16 19 Si 0.96 45.47 29.58 68.60 2.03 47.50 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 C 0.16 6.53 3.50 44.98 0.16 6.69 16 24 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 25 C -0.13 -4.50 7.95 71.98 0.57 -3.93 16 26 C -0.12 -3.94 4.84 30.67 0.15 -3.79 16 27 C 0.03 0.56 11.93 67.28 0.80 1.36 16 28 O -0.21 -3.77 10.20 18.99 0.19 -3.57 16 29 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.41 11.32 8.33 -92.71 -0.77 10.55 16 35 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.05 3.13 6.15 -2.39 -0.01 3.12 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.04 1.64 7.67 -2.39 -0.02 1.63 16 42 H 0.05 1.92 7.40 -2.39 -0.02 1.90 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.27 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -72.17 371.14 -0.07 -72.24 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.23 Total: 16.69 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 6.89 Total: 23.40 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -8.69 Total: -129.91 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.53 Total: -29.92 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -72.17 -0.07 -72.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947498650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.023 kcal (2) G-P(sol) polarization free energy of solvation -72.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds