Wall clock time and date at job start Tue Mar 31 2020 14:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47068 * 2 1 4 4 C 1.35724 * 117.00230 * 180.02562 * 3 2 1 5 5 C 1.41857 * 126.78838 * 179.70999 * 4 3 2 6 6 C 1.36669 * 103.81252 * 179.85063 * 5 4 3 7 7 C 1.47541 * 126.87825 * 180.12781 * 6 5 4 8 8 O 1.21574 * 120.00220 * 0.35272 * 7 6 5 9 9 N 1.34777 * 119.99587 * 180.35370 * 7 6 5 10 10 C 1.46501 * 119.99451 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.46343 * 34.97873 * 10 9 7 12 12 C 1.53038 * 109.46364 * 274.99532 * 10 9 7 13 13 C 1.53190 * 109.31401 * 178.61436 * 12 10 9 14 14 N 1.46927 * 108.77098 * 54.64126 * 13 12 10 15 15 C 1.36939 * 120.62915 * 126.41455 * 14 13 12 16 16 H 1.07998 * 120.00034 * 209.01894 * 15 14 13 17 17 C 1.38809 * 120.00252 * 29.00935 * 15 14 13 18 18 N 1.31619 * 120.00063 * 15.01689 * 17 15 14 19 19 Si 1.86806 * 120.00225 * 195.01631 * 17 15 14 20 20 H 1.48499 * 109.47211 * 90.00326 * 19 17 15 21 21 H 1.48500 * 109.47071 * 210.00171 * 19 17 15 22 22 H 1.48501 * 109.46733 * 330.00031 * 19 17 15 23 23 C 1.46920 * 118.74012 * 306.38557 * 14 13 12 24 24 H 1.08990 * 109.58940 * 293.82324 * 23 14 13 25 25 C 1.53006 * 109.58461 * 173.39598 * 23 14 13 26 26 C 1.53041 * 109.45695 * 154.93185 * 10 9 7 27 27 O 1.34657 * 106.23653 * 0.40430 * 6 5 4 28 28 N 1.20873 * 111.64004 * 359.72272 * 27 6 5 29 29 H 1.09007 * 109.47291 * 60.00466 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47489 * 299.99793 * 1 2 3 32 32 H 1.09000 * 109.46899 * 239.99734 * 2 1 3 33 33 H 1.08995 * 109.46890 * 119.99716 * 2 1 3 34 34 H 1.08002 * 128.08987 * 359.97438 * 5 4 3 35 35 H 0.96997 * 120.00492 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.49987 * 298.57544 * 12 10 9 37 37 H 1.09006 * 109.49069 * 58.66439 * 12 10 9 38 38 H 1.09007 * 109.58203 * 174.42537 * 13 12 10 39 39 H 1.08994 * 109.58800 * 294.70706 * 13 12 10 40 40 H 0.97003 * 120.00390 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.46852 * 60.00695 * 25 23 14 42 42 H 1.09009 * 109.46571 * 180.02562 * 25 23 14 43 43 H 1.08999 * 109.47473 * 300.00189 * 25 23 14 44 44 H 1.08999 * 109.50230 * 301.34084 * 26 10 9 45 45 H 1.09003 * 109.49865 * 61.43159 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0451 2.7627 -0.0064 6 6 5.3625 2.3988 -0.0008 7 6 6.5302 3.3006 -0.0008 8 8 6.3678 4.5055 0.0003 9 7 7.7769 2.7886 -0.0021 10 6 8.9364 3.6841 -0.0026 11 1 8.7096 4.5722 0.5871 12 6 9.2620 4.0959 -1.4402 13 6 10.4530 5.0593 -1.4338 14 7 11.5700 4.4256 -0.7200 15 6 12.8018 4.3167 -1.3083 16 1 13.4565 3.4996 -1.0432 17 6 13.2090 5.2563 -2.2454 18 7 12.5624 6.3972 -2.3571 19 14 14.6746 4.9015 -3.3479 20 1 14.2098 4.2311 -4.5888 21 1 15.3511 6.1764 -3.6977 22 1 15.6281 4.0149 -2.6336 23 6 11.3404 3.9114 0.6370 24 1 11.1328 4.7416 1.3120 25 6 12.5813 3.1551 1.1157 26 6 10.1393 2.9609 0.6074 27 8 5.3811 1.0524 -0.0017 28 7 4.2639 0.5911 -0.0014 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6292 3.7594 -0.0117 35 1 7.9065 1.8274 -0.0027 36 1 9.5132 3.2106 -2.0243 37 1 8.3966 4.5902 -1.8818 38 1 10.7515 5.2780 -2.4591 39 1 10.1723 5.9841 -0.9299 40 1 12.8472 7.0541 -3.0117 41 1 13.4373 3.8300 1.1240 42 1 12.4087 2.7742 2.1223 43 1 12.7817 2.3222 0.4418 44 1 9.8986 2.6472 1.6231 45 1 10.3823 2.0862 0.0041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947554761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:23 Heat of formation + Delta-G solvation = 11.554701 kcal Electronic energy + Delta-G solvation = -27269.765905 eV Core-core repulsion = 23292.039361 eV Total energy + Delta-G solvation = -3977.726544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.21989 -39.86332 -39.33492 -37.73813 -34.82983 -33.76405 -32.63198 -32.22278 -31.58256 -31.13306 -29.50874 -26.46044 -25.36573 -24.46852 -23.66859 -23.27054 -21.98085 -21.16716 -20.33610 -19.73433 -18.74263 -18.21813 -17.21533 -16.45966 -16.32571 -16.12193 -15.98138 -15.17353 -14.87079 -14.77470 -14.18910 -13.94534 -13.79101 -13.66403 -13.49720 -13.31962 -13.12812 -12.85060 -12.74538 -12.32583 -11.64135 -11.62088 -11.56892 -11.25646 -11.15413 -10.95397 -10.93988 -10.68429 -10.39379 -10.32512 -10.16032 -10.08371 -10.04790 -9.77982 -9.62579 -9.45256 -8.87162 -8.44295 -6.66162 -5.77523 -3.21736 0.56208 1.82888 2.26359 2.42032 2.92502 3.27278 3.38250 3.44898 3.45977 3.80673 4.39901 4.45092 4.48661 4.54827 4.72391 4.78183 4.91426 5.16381 5.22330 5.29508 5.33660 5.40964 5.43213 5.52106 5.55112 5.72428 5.93238 6.12021 6.13199 6.29512 6.32316 6.39362 6.46837 6.59003 6.61779 6.74761 6.76996 7.00490 7.08215 7.32954 7.39637 7.68877 7.79042 7.82327 8.01053 8.46339 9.21874 9.85267 10.41671 11.31057 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028770 B = 0.002283 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.001107 B =12260.546301 C =12496.871561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.159 4.159 6 C -0.050 4.050 7 C 0.600 3.400 8 O -0.506 6.506 9 N -0.704 5.704 10 C 0.149 3.851 11 H 0.087 0.913 12 C -0.149 4.149 13 C 0.174 3.826 14 N -0.587 5.587 15 C -0.250 4.250 16 H 0.071 0.929 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.171 3.829 24 H 0.028 0.972 25 C -0.136 4.136 26 C -0.135 4.135 27 O 0.115 5.885 28 N -0.393 5.393 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.190 0.810 35 H 0.403 0.597 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.756 -12.405 6.079 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.181 4.181 6 C -0.117 4.117 7 C 0.381 3.619 8 O -0.382 6.382 9 N -0.354 5.354 10 C 0.047 3.953 11 H 0.105 0.895 12 C -0.189 4.189 13 C 0.048 3.952 14 N -0.311 5.311 15 C -0.380 4.380 16 H 0.088 0.912 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.064 3.936 24 H 0.046 0.954 25 C -0.193 4.193 26 C -0.175 4.175 27 O 0.050 5.950 28 N -0.117 5.117 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.207 0.793 35 H 0.238 0.762 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.082 -12.496 5.977 23.580 hybrid contribution 0.430 -0.066 -0.690 0.815 sum -18.652 -12.562 5.287 23.101 Atomic orbital electron populations 1.21801 0.92072 1.03265 1.03754 1.22849 0.95977 0.80485 1.02499 1.86221 1.12962 1.30328 1.89271 1.21842 0.85846 0.90503 1.00828 1.22193 0.90137 0.99284 1.06530 1.24295 0.96852 0.84181 1.06340 1.16510 0.81168 0.86095 0.78093 1.90905 1.84710 1.12719 1.49823 1.46294 1.05247 1.11283 1.72532 1.21231 0.82780 0.92561 0.98768 0.89489 1.22616 1.00499 1.01497 0.94290 1.20768 0.83867 0.90964 0.99637 1.44176 1.07746 1.68834 1.10318 1.19178 0.93530 1.05856 1.19442 0.91152 1.25103 0.98178 0.94764 1.01632 1.70008 1.42176 1.06120 1.36395 0.86308 0.82425 0.77070 0.81048 1.21528 1.21834 1.20468 1.20359 0.91732 0.93232 0.88305 0.95417 1.21795 0.98758 1.00398 0.98364 1.22414 0.95625 1.00069 0.99414 1.84942 1.22835 1.18716 1.68527 1.73993 0.90450 1.22144 1.25120 0.91278 0.89901 0.91292 0.91486 0.91507 0.79265 0.76242 0.92365 0.92693 0.89010 0.96039 0.93630 0.91803 0.94259 0.92746 0.92408 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.16 0.38 -0.40 16 2 C 0.06 0.44 6.38 37.16 0.24 0.68 16 3 O -0.28 -2.98 10.21 -18.88 -0.19 -3.17 16 4 C 0.21 2.43 8.00 -16.72 -0.13 2.30 16 5 C -0.16 -1.84 10.97 -38.77 -0.43 -2.26 16 6 C -0.05 -0.62 7.29 -36.36 -0.26 -0.88 16 7 C 0.60 8.50 7.78 -12.47 -0.10 8.41 16 8 O -0.51 -8.85 16.57 5.30 0.09 -8.76 16 9 N -0.70 -9.35 5.07 -54.81 -0.28 -9.63 16 10 C 0.15 2.42 2.42 -67.89 -0.16 2.26 16 11 H 0.09 1.56 7.57 -51.93 -0.39 1.17 16 12 C -0.15 -2.80 5.65 -26.61 -0.15 -2.95 16 13 C 0.17 4.05 5.29 -3.71 -0.02 4.03 16 14 N -0.59 -13.87 2.99 -164.78 -0.49 -14.37 16 15 C -0.25 -6.49 8.60 -15.06 -0.13 -6.62 16 16 H 0.07 1.78 6.21 -52.49 -0.33 1.45 16 17 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 18 N -0.90 -25.71 11.14 55.49 0.62 -25.09 16 19 Si 0.90 21.28 29.58 -169.99 -5.03 16.25 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.17 3.33 3.50 -67.60 -0.24 3.09 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 C -0.14 -2.39 7.94 37.16 0.30 -2.10 16 26 C -0.14 -2.12 4.84 -26.61 -0.13 -2.25 16 27 O 0.12 1.36 11.03 15.51 0.17 1.53 16 28 N -0.39 -4.78 11.50 30.47 0.35 -4.43 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.19 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.40 4.32 8.43 -40.82 -0.34 3.98 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.06 1.23 7.62 -51.93 -0.40 0.84 16 42 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.05 0.96 7.45 -51.93 -0.39 0.58 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -30.19 370.71 -6.89 -37.08 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.79 Total: 1.75 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.92 Total: 3.25 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.20 Total: -53.51 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.19 -6.89 -37.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947554761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.631 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds