Wall clock time and date at job start Tue Mar 31 2020 14:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47068 * 2 1 4 4 C 1.35724 * 117.00230 * 180.02562 * 3 2 1 5 5 C 1.41857 * 126.78838 * 179.70999 * 4 3 2 6 6 C 1.36669 * 103.81252 * 179.85063 * 5 4 3 7 7 C 1.47541 * 126.87825 * 180.12781 * 6 5 4 8 8 O 1.21574 * 120.00220 * 0.35272 * 7 6 5 9 9 N 1.34777 * 119.99587 * 180.35370 * 7 6 5 10 10 C 1.46501 * 119.99451 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.46343 * 34.97873 * 10 9 7 12 12 C 1.53038 * 109.46364 * 274.99532 * 10 9 7 13 13 C 1.53190 * 109.31401 * 178.61436 * 12 10 9 14 14 N 1.46927 * 108.77098 * 54.64126 * 13 12 10 15 15 C 1.36939 * 120.62915 * 126.41455 * 14 13 12 16 16 H 1.07998 * 120.00034 * 209.01894 * 15 14 13 17 17 C 1.38809 * 120.00252 * 29.00935 * 15 14 13 18 18 N 1.31619 * 120.00063 * 15.01689 * 17 15 14 19 19 Si 1.86806 * 120.00225 * 195.01631 * 17 15 14 20 20 H 1.48499 * 109.47211 * 90.00326 * 19 17 15 21 21 H 1.48500 * 109.47071 * 210.00171 * 19 17 15 22 22 H 1.48501 * 109.46733 * 330.00031 * 19 17 15 23 23 C 1.46920 * 118.74012 * 306.38557 * 14 13 12 24 24 H 1.08990 * 109.58940 * 293.82324 * 23 14 13 25 25 C 1.53006 * 109.58461 * 173.39598 * 23 14 13 26 26 C 1.53041 * 109.45695 * 154.93185 * 10 9 7 27 27 O 1.34657 * 106.23653 * 0.40430 * 6 5 4 28 28 N 1.20873 * 111.64004 * 359.72272 * 27 6 5 29 29 H 1.09007 * 109.47291 * 60.00466 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47489 * 299.99793 * 1 2 3 32 32 H 1.09000 * 109.46899 * 239.99734 * 2 1 3 33 33 H 1.08995 * 109.46890 * 119.99716 * 2 1 3 34 34 H 1.08002 * 128.08987 * 359.97438 * 5 4 3 35 35 H 0.96997 * 120.00492 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.49987 * 298.57544 * 12 10 9 37 37 H 1.09006 * 109.49069 * 58.66439 * 12 10 9 38 38 H 1.09007 * 109.58203 * 174.42537 * 13 12 10 39 39 H 1.08994 * 109.58800 * 294.70706 * 13 12 10 40 40 H 0.97003 * 120.00390 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.46852 * 60.00695 * 25 23 14 42 42 H 1.09009 * 109.46571 * 180.02562 * 25 23 14 43 43 H 1.08999 * 109.47473 * 300.00189 * 25 23 14 44 44 H 1.08999 * 109.50230 * 301.34084 * 26 10 9 45 45 H 1.09003 * 109.49865 * 61.43159 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0451 2.7627 -0.0064 6 6 5.3625 2.3988 -0.0008 7 6 6.5302 3.3006 -0.0008 8 8 6.3678 4.5055 0.0003 9 7 7.7769 2.7886 -0.0021 10 6 8.9364 3.6841 -0.0026 11 1 8.7096 4.5722 0.5871 12 6 9.2620 4.0959 -1.4402 13 6 10.4530 5.0593 -1.4338 14 7 11.5700 4.4256 -0.7200 15 6 12.8018 4.3167 -1.3083 16 1 13.4565 3.4996 -1.0432 17 6 13.2090 5.2563 -2.2454 18 7 12.5624 6.3972 -2.3571 19 14 14.6746 4.9015 -3.3479 20 1 14.2098 4.2311 -4.5888 21 1 15.3511 6.1764 -3.6977 22 1 15.6281 4.0149 -2.6336 23 6 11.3404 3.9114 0.6370 24 1 11.1328 4.7416 1.3120 25 6 12.5813 3.1551 1.1157 26 6 10.1393 2.9609 0.6074 27 8 5.3811 1.0524 -0.0017 28 7 4.2639 0.5911 -0.0014 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6292 3.7594 -0.0117 35 1 7.9065 1.8274 -0.0027 36 1 9.5132 3.2106 -2.0243 37 1 8.3966 4.5902 -1.8818 38 1 10.7515 5.2780 -2.4591 39 1 10.1723 5.9841 -0.9299 40 1 12.8472 7.0541 -3.0117 41 1 13.4373 3.8300 1.1240 42 1 12.4087 2.7742 2.1223 43 1 12.7817 2.3222 0.4418 44 1 9.8986 2.6472 1.6231 45 1 10.3823 2.0862 0.0041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947554761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:22 Heat of formation + Delta-G solvation = -9.510944 kcal Electronic energy + Delta-G solvation = -27270.679380 eV Core-core repulsion = 23292.039361 eV Total energy + Delta-G solvation = -3978.640019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.14704 -41.11310 -40.11216 -39.27479 -36.26845 -34.63183 -34.26508 -33.45766 -32.65718 -32.14823 -31.15546 -28.00707 -26.87206 -25.65370 -24.57102 -24.24005 -23.52231 -22.31129 -21.61342 -21.16060 -20.02421 -19.13668 -18.23966 -18.05700 -17.41645 -17.12139 -17.01812 -16.87497 -16.03227 -15.79886 -15.65494 -15.48451 -15.17693 -14.86334 -14.76072 -14.49697 -14.31034 -14.08959 -13.55090 -13.30203 -13.02340 -12.91930 -12.70951 -12.65316 -12.59680 -12.40209 -12.32972 -12.14395 -12.06021 -11.86082 -11.68684 -11.57107 -11.49813 -11.11184 -11.04919 -10.52768 -10.47273 -10.13540 -8.61046 -7.80171 -5.26012 -0.42169 0.91504 1.36793 1.47822 1.50009 1.51285 1.59217 1.82105 2.22207 2.55519 2.92354 3.35992 3.56004 3.62942 3.74056 3.89702 3.90999 3.92310 4.07428 4.07971 4.26532 4.29555 4.43205 4.53753 4.65332 4.72395 4.78465 4.79783 4.82957 4.85346 4.99090 5.08767 5.11162 5.15327 5.20025 5.38791 5.45300 5.56482 5.60896 5.76403 5.78315 5.84933 6.25777 6.47142 6.84914 6.93068 7.21383 7.93496 8.45143 9.26913 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028770 B = 0.002283 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.001107 B =12260.546301 C =12496.871561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.289 6.289 4 C 0.205 3.795 5 C -0.154 4.154 6 C -0.053 4.053 7 C 0.607 3.393 8 O -0.542 6.542 9 N -0.690 5.690 10 C 0.161 3.839 11 H 0.070 0.930 12 C -0.134 4.134 13 C 0.181 3.819 14 N -0.603 5.603 15 C -0.244 4.244 16 H 0.080 0.920 17 C -0.058 4.058 18 N -0.940 5.940 19 Si 0.962 3.038 20 H -0.289 1.289 21 H -0.302 1.302 22 H -0.265 1.265 23 C 0.159 3.841 24 H 0.016 0.984 25 C -0.128 4.128 26 C -0.121 4.121 27 O 0.122 5.878 28 N -0.397 5.397 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.202 0.798 35 H 0.420 0.580 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.056 0.944 39 H -0.009 1.009 40 H 0.246 0.754 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.753 -15.260 7.135 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.196 6.196 4 C 0.008 3.992 5 C -0.177 4.177 6 C -0.119 4.119 7 C 0.390 3.610 8 O -0.420 6.420 9 N -0.340 5.340 10 C 0.057 3.943 11 H 0.088 0.912 12 C -0.174 4.174 13 C 0.055 3.945 14 N -0.327 5.327 15 C -0.374 4.374 16 H 0.098 0.902 17 C -0.253 4.253 18 N -0.587 5.587 19 Si 0.791 3.209 20 H -0.216 1.216 21 H -0.229 1.229 22 H -0.190 1.190 23 C 0.053 3.947 24 H 0.033 0.967 25 C -0.185 4.185 26 C -0.160 4.160 27 O 0.055 5.945 28 N -0.122 5.122 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.219 0.781 35 H 0.258 0.742 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.009 0.991 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.098 -15.427 7.062 26.301 hybrid contribution 0.650 0.783 -0.952 1.394 sum -19.448 -14.643 6.110 25.099 Atomic orbital electron populations 1.21833 0.90092 1.04695 1.03765 1.23126 0.97541 0.79242 1.02626 1.86240 1.12222 1.32103 1.89036 1.21939 0.86393 0.90355 1.00550 1.22415 0.89974 0.99931 1.05348 1.23818 0.96184 0.84326 1.07600 1.16580 0.81599 0.85767 0.77079 1.90899 1.85287 1.14418 1.51381 1.45966 1.04190 1.11759 1.72111 1.20859 0.84189 0.92811 0.96436 0.91190 1.22356 0.98177 1.00333 0.96537 1.20477 0.85633 0.91220 0.97216 1.44438 1.07141 1.68859 1.12265 1.19544 0.94102 1.05260 1.18529 0.90231 1.25842 1.00973 0.94875 1.03592 1.70182 1.44056 1.07175 1.37310 0.85336 0.79825 0.76420 0.79312 1.21596 1.22905 1.18969 1.20647 0.94467 0.93817 0.85777 0.96675 1.21719 0.96736 0.99499 1.00567 1.22228 0.93144 0.98912 1.01705 1.84940 1.22756 1.18236 1.68519 1.73974 0.90623 1.22294 1.25305 0.91324 0.87742 0.91200 0.91443 0.91272 0.78118 0.74242 0.91824 0.93093 0.92556 0.99051 0.94500 0.94226 0.90414 0.92659 0.88833 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 71.98 0.74 -0.48 16 2 C 0.05 0.67 6.38 71.98 0.46 1.13 16 3 O -0.29 -5.67 10.21 -90.46 -0.92 -6.60 16 4 C 0.20 4.46 8.00 85.78 0.69 5.15 16 5 C -0.15 -3.32 10.97 22.80 0.25 -3.07 16 6 C -0.05 -1.20 7.29 24.36 0.18 -1.03 16 7 C 0.61 16.31 7.78 86.70 0.67 16.99 16 8 O -0.54 -18.68 16.57 -3.95 -0.07 -18.75 16 9 N -0.69 -16.76 5.07 -445.59 -2.26 -19.02 16 10 C 0.16 4.99 2.42 45.02 0.11 5.10 16 11 H 0.07 2.48 7.57 -2.39 -0.02 2.46 16 12 C -0.13 -5.04 5.65 30.67 0.17 -4.87 16 13 C 0.18 8.75 5.29 86.36 0.46 9.21 16 14 N -0.60 -28.71 2.99 -675.25 -2.02 -30.73 16 15 C -0.24 -12.70 8.60 84.03 0.72 -11.98 16 16 H 0.08 3.94 6.21 -2.91 -0.02 3.92 16 17 C -0.06 -3.20 4.96 84.86 0.42 -2.78 16 18 N -0.94 -55.83 11.14 21.65 0.24 -55.59 16 19 Si 0.96 44.46 29.58 68.60 2.03 46.49 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 C 0.16 5.98 3.50 44.98 0.16 6.13 16 24 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 25 C -0.13 -4.21 7.94 71.98 0.57 -3.64 16 26 C -0.12 -3.42 4.84 30.67 0.15 -3.27 16 27 O 0.12 2.61 11.03 65.69 0.72 3.33 16 28 N -0.40 -8.90 11.50 -172.02 -1.98 -10.88 16 29 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.20 3.76 8.06 -2.91 -0.02 3.73 16 35 H 0.42 7.60 8.43 -92.71 -0.78 6.82 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.06 3.11 6.06 -2.38 -0.01 3.10 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.04 1.48 7.62 -2.39 -0.02 1.46 16 42 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.05 1.80 7.45 -2.39 -0.02 1.79 16 44 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -67.24 370.71 1.72 -65.52 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.23 Total: 13.63 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 5.75 Total: 12.59 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -6.02 Total: -116.21 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.26 Total: -22.01 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -67.24 1.72 -65.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947554761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.014 kcal (2) G-P(sol) polarization free energy of solvation -67.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds