Wall clock time and date at job start Tue Mar 31 2020 14:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47029 * 2 1 4 4 C 1.35728 * 116.99984 * 180.02562 * 3 2 1 5 5 C 1.41849 * 126.78574 * 179.97438 * 4 3 2 6 6 C 1.36664 * 103.81248 * 180.02562 * 5 4 3 7 7 C 1.47542 * 126.88136 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00223 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00065 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99796 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46223 * 325.02448 * 10 9 7 12 12 C 1.53045 * 109.46195 * 84.99961 * 10 9 7 13 13 C 1.53182 * 109.31425 * 58.65254 * 12 10 9 14 14 N 1.46927 * 108.77793 * 54.63587 * 13 12 10 15 15 C 1.36936 * 120.63113 * 126.41253 * 14 13 12 16 16 H 1.08000 * 120.00172 * 208.63255 * 15 14 13 17 17 C 1.38814 * 119.99986 * 28.63222 * 15 14 13 18 18 N 1.31612 * 120.00200 * 14.72085 * 17 15 14 19 19 Si 1.86798 * 119.99944 * 194.71719 * 17 15 14 20 20 H 1.48506 * 109.47458 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47335 * 120.00061 * 19 17 15 22 22 H 1.48504 * 109.47113 * 240.00357 * 19 17 15 23 23 C 1.46923 * 118.73866 * 306.39232 * 14 13 12 24 24 H 1.09005 * 109.58913 * 293.81903 * 23 14 13 25 25 C 1.52998 * 109.70681 * 173.46416 * 23 14 13 26 26 C 1.53045 * 109.45816 * 205.06647 * 10 9 7 27 27 O 1.34664 * 106.24301 * 0.24360 * 6 5 4 28 28 N 1.20877 * 111.62512 * 359.56018 * 27 6 5 29 29 H 1.09000 * 109.47082 * 60.00326 * 1 2 3 30 30 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47149 * 300.00335 * 1 2 3 32 32 H 1.08993 * 109.46922 * 239.99338 * 2 1 3 33 33 H 1.09007 * 109.47025 * 119.99287 * 2 1 3 34 34 H 1.08003 * 128.09680 * 359.97438 * 5 4 3 35 35 H 0.97000 * 119.99994 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.49517 * 178.60676 * 12 10 9 37 37 H 1.08998 * 109.49211 * 298.69977 * 12 10 9 38 38 H 1.09002 * 109.58860 * 174.42464 * 13 12 10 39 39 H 1.08998 * 109.59003 * 294.84707 * 13 12 10 40 40 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.47024 * 300.63994 * 25 23 14 42 42 H 1.08997 * 109.47335 * 60.63596 * 25 23 14 43 43 H 1.08998 * 109.47525 * 180.63969 * 25 23 14 44 44 H 1.08991 * 109.49935 * 61.29203 * 26 10 9 45 45 H 1.09003 * 109.49848 * 181.39296 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0452 2.7627 -0.0012 6 6 5.3625 2.3988 -0.0021 7 6 6.5302 3.3005 -0.0036 8 8 6.3679 4.5055 -0.0036 9 7 7.7770 2.7885 -0.0049 10 6 8.9365 3.6840 -0.0058 11 1 8.7086 4.5726 -0.5945 12 6 9.2646 4.0948 1.4315 13 6 9.5507 2.8412 2.2639 14 7 10.6081 2.0650 1.6020 15 6 11.7339 1.6935 2.2873 16 1 12.6663 1.5554 1.7599 17 6 11.6769 1.4944 3.6599 18 7 10.5115 1.3753 4.2597 19 14 13.2543 1.3954 4.6556 20 1 14.4213 1.5576 3.7518 21 1 13.2641 2.4742 5.6759 22 1 13.3315 0.0749 5.3307 23 6 10.4344 1.6946 0.1908 24 1 9.6019 0.9974 0.0958 25 6 11.7144 1.0394 -0.3319 26 6 10.1383 2.9612 -0.6186 27 8 5.3812 1.0523 -0.0075 28 7 4.2639 0.5911 -0.0012 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.6293 3.7594 -0.0017 35 1 7.9066 1.8272 -0.0046 36 1 10.1422 4.7412 1.4337 37 1 8.4169 4.6300 1.8593 38 1 9.8809 3.1322 3.2611 39 1 8.6463 2.2374 2.3381 40 1 10.4716 1.2358 5.2188 41 1 12.5465 1.7364 -0.2314 42 1 11.9233 0.1387 0.2451 43 1 11.5854 0.7766 -1.3818 44 1 9.9125 2.6895 -1.6497 45 1 11.0078 3.6182 -0.5970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947554762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:26 Heat of formation + Delta-G solvation = 14.326870 kcal Electronic energy + Delta-G solvation = -27971.016895 eV Core-core repulsion = 23993.410561 eV Total energy + Delta-G solvation = -3977.606334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.05517 -39.89567 -39.19786 -37.76298 -34.50944 -33.61677 -32.53619 -32.16169 -31.47152 -30.97759 -29.61509 -26.46835 -25.22831 -24.62806 -23.54959 -23.23485 -22.02059 -21.01128 -20.63949 -19.18509 -18.69406 -18.05128 -17.05817 -16.49656 -16.19256 -16.04063 -15.58192 -15.22109 -14.83885 -14.68936 -14.12641 -14.00707 -13.75046 -13.63971 -13.38193 -13.18786 -13.02296 -12.89582 -12.50638 -12.20439 -11.91237 -11.50222 -11.44550 -11.42064 -11.24391 -11.03478 -10.70325 -10.68137 -10.42499 -10.24066 -10.13060 -10.09757 -9.94837 -9.73759 -9.47675 -9.33253 -8.80046 -8.47735 -6.66100 -5.78427 -3.22684 0.71431 1.98115 2.40127 2.58142 3.05362 3.36342 3.42959 3.44779 3.45838 3.95848 4.47580 4.53198 4.56905 4.67816 4.85786 4.90533 5.05736 5.25896 5.29520 5.33287 5.33877 5.40275 5.54218 5.55440 5.62025 5.65040 5.92421 6.06658 6.14147 6.27460 6.30889 6.41044 6.49824 6.55862 6.67153 6.75231 6.85114 6.96935 7.02800 7.35783 7.50087 7.68319 7.81405 7.95026 8.13159 8.44801 9.20764 9.84230 10.39882 11.29557 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.002988 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.323494 B = 9368.128065 C =10021.663176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.205 3.795 5 C -0.160 4.160 6 C -0.048 4.048 7 C 0.602 3.398 8 O -0.517 6.517 9 N -0.692 5.692 10 C 0.153 3.847 11 H 0.078 0.922 12 C -0.155 4.155 13 C 0.172 3.828 14 N -0.587 5.587 15 C -0.249 4.249 16 H 0.071 0.929 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.166 3.834 24 H 0.022 0.978 25 C -0.137 4.137 26 C -0.140 4.140 27 O 0.120 5.880 28 N -0.390 5.390 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.189 0.811 35 H 0.409 0.591 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.018 0.982 40 H 0.252 0.748 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.058 0.942 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.637 -0.103 -10.848 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.008 3.992 5 C -0.183 4.183 6 C -0.115 4.115 7 C 0.384 3.616 8 O -0.394 6.394 9 N -0.343 5.343 10 C 0.050 3.950 11 H 0.096 0.904 12 C -0.195 4.195 13 C 0.047 3.953 14 N -0.310 5.310 15 C -0.379 4.379 16 H 0.089 0.911 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.059 3.941 24 H 0.039 0.961 25 C -0.194 4.194 26 C -0.179 4.179 27 O 0.054 5.946 28 N -0.114 5.114 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.206 0.794 35 H 0.246 0.754 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.027 -0.407 -10.670 17.629 hybrid contribution 0.492 -0.031 0.741 0.890 sum -13.536 -0.438 -9.929 16.793 Atomic orbital electron populations 1.21796 0.92158 1.03214 1.03656 1.22845 0.95881 0.80559 1.02581 1.86205 1.13016 1.30273 1.89388 1.21825 0.85817 0.90518 1.01080 1.22132 0.90081 0.99175 1.06937 1.24222 0.96749 0.84287 1.06204 1.16464 0.81218 0.86004 0.77877 1.90855 1.84928 1.12774 1.50833 1.46114 1.04795 1.11775 1.71636 1.21062 0.83639 0.92087 0.98256 0.90355 1.22594 1.00622 1.01254 0.95068 1.20766 0.90384 0.87912 0.96262 1.44146 1.20516 1.60553 1.05806 1.19215 0.87812 1.40788 0.90053 0.91137 1.25077 0.96326 1.00173 0.98088 1.70010 1.22570 1.52817 1.09318 0.86257 0.83218 0.77214 0.80267 1.20303 1.21676 1.21839 1.20404 0.95566 0.91855 0.86284 0.96107 1.21797 0.98057 1.01364 0.98229 1.22389 0.97057 1.00081 0.98397 1.84986 1.22741 1.18656 1.68219 1.74010 0.90436 1.22175 1.24758 0.91377 0.89942 0.91307 0.91525 0.91412 0.79379 0.75393 0.91392 0.92601 0.89204 0.96395 0.93754 0.92634 0.91932 0.94237 0.92342 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.52 6.38 37.16 0.24 0.76 16 3 O -0.28 -3.38 10.21 -18.89 -0.19 -3.57 16 4 C 0.20 2.75 8.00 -16.72 -0.13 2.62 16 5 C -0.16 -2.09 10.97 -38.77 -0.43 -2.52 16 6 C -0.05 -0.68 7.29 -36.36 -0.26 -0.95 16 7 C 0.60 9.39 7.78 -12.47 -0.10 9.29 16 8 O -0.52 -9.17 16.57 5.29 0.09 -9.08 16 9 N -0.69 -10.65 4.26 -54.80 -0.23 -10.88 16 10 C 0.15 2.46 2.78 -67.89 -0.19 2.27 16 11 H 0.08 1.22 7.57 -51.93 -0.39 0.83 16 12 C -0.16 -2.90 5.77 -26.61 -0.15 -3.06 16 13 C 0.17 3.91 5.03 -3.72 -0.02 3.89 16 14 N -0.59 -13.47 2.99 -164.78 -0.49 -13.97 16 15 C -0.25 -6.38 8.63 -15.06 -0.13 -6.51 16 16 H 0.07 1.77 6.20 -52.49 -0.33 1.44 16 17 C 0.00 0.05 4.97 -17.43 -0.09 -0.04 16 18 N -0.90 -25.46 11.09 55.49 0.62 -24.84 16 19 Si 0.90 21.20 29.58 -169.99 -5.03 16.17 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.17 3.08 3.19 -67.60 -0.22 2.87 16 24 H 0.02 0.40 6.64 -51.93 -0.34 0.05 16 25 C -0.14 -2.37 7.95 37.16 0.30 -2.07 16 26 C -0.14 -2.16 5.07 -26.61 -0.13 -2.30 16 27 O 0.12 1.74 11.03 15.49 0.17 1.91 16 28 N -0.39 -5.62 11.50 30.47 0.35 -5.27 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 35 H 0.41 6.13 6.69 -40.82 -0.27 5.85 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 2.35 6.02 -51.93 -0.31 2.04 16 39 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.05 0.98 7.42 -51.93 -0.39 0.59 16 42 H 0.06 1.18 7.66 -51.93 -0.40 0.79 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -29.63 366.37 -6.76 -36.39 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.62 Total: 3.94 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -0.93 Total: 3.68 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.24 Total: -54.96 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.63 -6.76 -36.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947554762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.716 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds