Wall clock time and date at job start Tue Mar 31 2020 14:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47029 * 2 1 4 4 C 1.35728 * 116.99984 * 180.02562 * 3 2 1 5 5 C 1.41849 * 126.78574 * 179.97438 * 4 3 2 6 6 C 1.36664 * 103.81248 * 180.02562 * 5 4 3 7 7 C 1.47542 * 126.88136 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00223 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00065 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99796 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46223 * 325.02448 * 10 9 7 12 12 C 1.53045 * 109.46195 * 84.99961 * 10 9 7 13 13 C 1.53182 * 109.31425 * 58.65254 * 12 10 9 14 14 N 1.46927 * 108.77793 * 54.63587 * 13 12 10 15 15 C 1.36936 * 120.63113 * 126.41253 * 14 13 12 16 16 H 1.08000 * 120.00172 * 208.63255 * 15 14 13 17 17 C 1.38814 * 119.99986 * 28.63222 * 15 14 13 18 18 N 1.31612 * 120.00200 * 14.72085 * 17 15 14 19 19 Si 1.86798 * 119.99944 * 194.71719 * 17 15 14 20 20 H 1.48506 * 109.47458 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47335 * 120.00061 * 19 17 15 22 22 H 1.48504 * 109.47113 * 240.00357 * 19 17 15 23 23 C 1.46923 * 118.73866 * 306.39232 * 14 13 12 24 24 H 1.09005 * 109.58913 * 293.81903 * 23 14 13 25 25 C 1.52998 * 109.70681 * 173.46416 * 23 14 13 26 26 C 1.53045 * 109.45816 * 205.06647 * 10 9 7 27 27 O 1.34664 * 106.24301 * 0.24360 * 6 5 4 28 28 N 1.20877 * 111.62512 * 359.56018 * 27 6 5 29 29 H 1.09000 * 109.47082 * 60.00326 * 1 2 3 30 30 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47149 * 300.00335 * 1 2 3 32 32 H 1.08993 * 109.46922 * 239.99338 * 2 1 3 33 33 H 1.09007 * 109.47025 * 119.99287 * 2 1 3 34 34 H 1.08003 * 128.09680 * 359.97438 * 5 4 3 35 35 H 0.97000 * 119.99994 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.49517 * 178.60676 * 12 10 9 37 37 H 1.08998 * 109.49211 * 298.69977 * 12 10 9 38 38 H 1.09002 * 109.58860 * 174.42464 * 13 12 10 39 39 H 1.08998 * 109.59003 * 294.84707 * 13 12 10 40 40 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.47024 * 300.63994 * 25 23 14 42 42 H 1.08997 * 109.47335 * 60.63596 * 25 23 14 43 43 H 1.08998 * 109.47525 * 180.63969 * 25 23 14 44 44 H 1.08991 * 109.49935 * 61.29203 * 26 10 9 45 45 H 1.09003 * 109.49848 * 181.39296 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0452 2.7627 -0.0012 6 6 5.3625 2.3988 -0.0021 7 6 6.5302 3.3005 -0.0036 8 8 6.3679 4.5055 -0.0036 9 7 7.7770 2.7885 -0.0049 10 6 8.9365 3.6840 -0.0058 11 1 8.7086 4.5726 -0.5945 12 6 9.2646 4.0948 1.4315 13 6 9.5507 2.8412 2.2639 14 7 10.6081 2.0650 1.6020 15 6 11.7339 1.6935 2.2873 16 1 12.6663 1.5554 1.7599 17 6 11.6769 1.4944 3.6599 18 7 10.5115 1.3753 4.2597 19 14 13.2543 1.3954 4.6556 20 1 14.4213 1.5576 3.7518 21 1 13.2641 2.4742 5.6759 22 1 13.3315 0.0749 5.3307 23 6 10.4344 1.6946 0.1908 24 1 9.6019 0.9974 0.0958 25 6 11.7144 1.0394 -0.3319 26 6 10.1383 2.9612 -0.6186 27 8 5.3812 1.0523 -0.0075 28 7 4.2639 0.5911 -0.0012 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.6293 3.7594 -0.0017 35 1 7.9066 1.8272 -0.0046 36 1 10.1422 4.7412 1.4337 37 1 8.4169 4.6300 1.8593 38 1 9.8809 3.1322 3.2611 39 1 8.6463 2.2374 2.3381 40 1 10.4716 1.2358 5.2188 41 1 12.5465 1.7364 -0.2314 42 1 11.9233 0.1387 0.2451 43 1 11.5854 0.7766 -1.3818 44 1 9.9125 2.6895 -1.6497 45 1 11.0078 3.6182 -0.5970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947554762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:25 Heat of formation + Delta-G solvation = -5.591018 kcal Electronic energy + Delta-G solvation = -27971.880599 eV Core-core repulsion = 23993.410561 eV Total energy + Delta-G solvation = -3978.470038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.13636 -41.21911 -40.11086 -39.24924 -36.02922 -34.62676 -34.14359 -33.44747 -32.54239 -32.14025 -31.23454 -28.00385 -26.86814 -25.80231 -24.56338 -24.21991 -23.63339 -22.27477 -21.95821 -20.41712 -20.15196 -19.12918 -18.25323 -18.04324 -17.22283 -17.07258 -17.01306 -16.82269 -16.18753 -15.73461 -15.66368 -15.49244 -15.29515 -14.75826 -14.69716 -14.42407 -14.11428 -14.08470 -13.55527 -13.34024 -13.20625 -12.95642 -12.85807 -12.63830 -12.43516 -12.39595 -12.28888 -12.15088 -12.11458 -11.94142 -11.66530 -11.48604 -11.40231 -11.05060 -10.95033 -10.48868 -10.48485 -10.14249 -8.56176 -7.78842 -5.23671 -0.41094 0.92514 1.42987 1.47300 1.47668 1.50703 1.59039 1.84678 2.27248 2.55567 2.93217 3.36718 3.56707 3.65463 3.72622 3.91221 3.91331 3.98166 4.08015 4.10698 4.23469 4.26164 4.47978 4.53429 4.64232 4.69385 4.78472 4.83224 4.85019 4.94937 4.99682 5.05371 5.14470 5.15023 5.20154 5.44677 5.48250 5.58158 5.62446 5.77496 5.83041 5.83690 6.25726 6.48214 6.81834 6.92539 7.23347 7.96405 8.46247 9.27036 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.002988 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.323494 B = 9368.128065 C =10021.663176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.286 6.286 4 C 0.205 3.795 5 C -0.150 4.150 6 C -0.058 4.058 7 C 0.608 3.392 8 O -0.539 6.539 9 N -0.690 5.690 10 C 0.158 3.842 11 H 0.094 0.906 12 C -0.144 4.144 13 C 0.183 3.817 14 N -0.602 5.602 15 C -0.241 4.241 16 H 0.077 0.923 17 C -0.056 4.056 18 N -0.937 5.937 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.297 1.297 22 H -0.298 1.298 23 C 0.156 3.844 24 H 0.023 0.977 25 C -0.131 4.131 26 C -0.126 4.126 27 O 0.112 5.888 28 N -0.401 5.401 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.208 0.792 35 H 0.411 0.589 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.049 0.951 39 H -0.003 1.003 40 H 0.244 0.756 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.006 0.093 -13.048 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.194 6.194 4 C 0.008 3.992 5 C -0.173 4.173 6 C -0.124 4.124 7 C 0.391 3.609 8 O -0.417 6.417 9 N -0.341 5.341 10 C 0.055 3.945 11 H 0.112 0.888 12 C -0.184 4.184 13 C 0.057 3.943 14 N -0.326 5.326 15 C -0.371 4.371 16 H 0.095 0.905 17 C -0.251 4.251 18 N -0.585 5.585 19 Si 0.787 3.213 20 H -0.188 1.188 21 H -0.225 1.225 22 H -0.226 1.226 23 C 0.051 3.949 24 H 0.040 0.960 25 C -0.189 4.189 26 C -0.165 4.165 27 O 0.047 5.953 28 N -0.127 5.127 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.249 0.751 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.015 0.985 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.385 -0.216 -12.913 19.332 hybrid contribution 0.521 -0.142 1.373 1.475 sum -13.864 -0.358 -11.540 18.041 Atomic orbital electron populations 1.21825 0.89804 1.04703 1.03860 1.23132 0.97713 0.79325 1.02489 1.86231 1.12049 1.31988 1.89087 1.21982 0.86419 0.90436 1.00403 1.22417 0.89581 0.99928 1.05379 1.24014 0.96704 0.84254 1.07419 1.16503 0.81427 0.85821 0.77119 1.90841 1.85288 1.13668 1.51879 1.46072 1.04716 1.11802 1.71473 1.20996 0.84230 0.92955 0.96325 0.88787 1.22407 1.00526 0.99031 0.96397 1.20455 0.89305 0.89236 0.95289 1.44379 1.19800 1.60861 1.07530 1.19547 0.88978 1.38373 0.90233 0.90508 1.25746 0.98568 1.01415 0.99362 1.70169 1.24313 1.55196 1.08798 0.85346 0.80846 0.76272 0.78854 1.18834 1.22468 1.22599 1.20692 0.96468 0.93685 0.84104 0.95965 1.21741 0.97031 0.99976 1.00103 1.22266 0.96714 0.98113 0.99428 1.84972 1.22898 1.18727 1.68700 1.73991 0.90625 1.22651 1.25409 0.90944 0.87791 0.91293 0.91293 0.91856 0.77524 0.75144 0.91224 0.93000 0.93250 0.98528 0.94684 0.93042 0.94259 0.90450 0.88823 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.83 6.38 71.98 0.46 1.28 16 3 O -0.29 -6.53 10.21 -90.51 -0.92 -7.46 16 4 C 0.20 5.30 8.00 85.78 0.69 5.98 16 5 C -0.15 -3.73 10.97 22.79 0.25 -3.48 16 6 C -0.06 -1.59 7.29 24.36 0.18 -1.42 16 7 C 0.61 18.29 7.78 86.70 0.67 18.97 16 8 O -0.54 -18.38 16.57 -3.98 -0.07 -18.44 16 9 N -0.69 -20.29 4.26 -445.56 -1.90 -22.19 16 10 C 0.16 4.77 2.78 45.02 0.13 4.89 16 11 H 0.09 2.65 7.57 -2.39 -0.02 2.63 16 12 C -0.14 -5.30 5.77 30.67 0.18 -5.13 16 13 C 0.18 8.49 5.03 86.36 0.43 8.93 16 14 N -0.60 -27.59 2.99 -675.24 -2.02 -29.61 16 15 C -0.24 -12.36 8.63 84.03 0.73 -11.64 16 16 H 0.08 3.79 6.20 -2.91 -0.02 3.77 16 17 C -0.06 -3.07 4.97 84.86 0.42 -2.65 16 18 N -0.94 -54.85 11.09 21.65 0.24 -54.61 16 19 Si 0.96 44.39 29.58 68.60 2.03 46.42 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 C 0.16 5.52 3.19 44.98 0.14 5.67 16 24 H 0.02 0.81 6.64 -2.38 -0.02 0.79 16 25 C -0.13 -4.22 7.95 71.98 0.57 -3.65 16 26 C -0.13 -3.51 5.07 30.68 0.16 -3.35 16 27 O 0.11 3.20 11.03 65.62 0.72 3.92 16 28 N -0.40 -11.32 11.50 -172.01 -1.98 -13.30 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.21 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.41 11.85 6.69 -92.71 -0.62 11.23 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 2.69 6.02 -2.39 -0.01 2.68 16 39 H 0.00 -0.17 7.74 -2.39 -0.02 -0.19 16 40 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 41 H 0.05 1.68 7.42 -2.38 -0.02 1.67 16 42 H 0.04 1.43 7.66 -2.39 -0.02 1.41 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -64.89 366.37 2.24 -62.65 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.39 Total: 19.03 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 5.74 Total: 13.59 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -5.66 Total: -119.71 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.27 Total: -21.98 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -64.89 2.24 -62.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947554762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.060 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds