Wall clock time and date at job start Tue Mar 31 2020 14:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.46791 * 2 1 4 4 C 1.35728 * 117.00043 * 180.02562 * 3 2 1 5 5 C 1.41857 * 126.79173 * 179.97438 * 4 3 2 6 6 C 1.36658 * 103.81314 * 180.02562 * 5 4 3 7 7 C 1.47545 * 126.87635 * 180.02562 * 6 5 4 8 8 O 1.21578 * 120.00261 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99851 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99993 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.45851 * 324.97360 * 10 9 7 12 12 C 1.53038 * 109.44957 * 84.93644 * 10 9 7 13 13 C 1.52765 * 109.38424 * 181.25280 * 12 10 9 14 14 N 1.46924 * 109.00726 * 305.59230 * 13 12 10 15 15 C 1.36940 * 120.62840 * 233.58467 * 14 13 12 16 16 H 1.07998 * 119.99935 * 150.69862 * 15 14 13 17 17 C 1.38807 * 119.99862 * 330.69507 * 15 14 13 18 18 N 1.31628 * 120.00356 * 336.07655 * 17 15 14 19 19 Si 1.86800 * 120.00149 * 156.07948 * 17 15 14 20 20 H 1.48504 * 109.47268 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.46887 * 299.99602 * 19 17 15 22 22 H 1.48493 * 109.47418 * 59.99607 * 19 17 15 23 23 C 1.46924 * 118.74146 * 53.30696 * 14 13 12 24 24 H 1.08999 * 109.58588 * 66.57335 * 23 14 13 25 25 C 1.53001 * 109.58908 * 186.85518 * 23 14 13 26 26 C 1.53043 * 109.45919 * 204.99739 * 10 9 7 27 27 O 1.34655 * 106.24432 * 0.26207 * 6 5 4 28 28 N 1.20881 * 111.62990 * 359.52947 * 27 6 5 29 29 H 1.09004 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46891 * 300.00012 * 1 2 3 31 31 H 1.08990 * 109.47115 * 60.00593 * 1 2 3 32 32 H 1.08993 * 109.46836 * 239.99915 * 2 1 3 33 33 H 1.08997 * 109.46896 * 119.99784 * 2 1 3 34 34 H 1.07995 * 128.08871 * 0.05849 * 5 4 3 35 35 H 0.97001 * 120.00126 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.49855 * 301.33159 * 12 10 9 37 37 H 1.09002 * 109.49456 * 61.43129 * 12 10 9 38 38 H 1.08997 * 109.50761 * 185.70928 * 13 12 10 39 39 H 1.08995 * 109.43030 * 65.42464 * 13 12 10 40 40 H 0.97004 * 119.99318 * 354.30837 * 18 17 15 41 41 H 1.09007 * 109.47126 * 59.99793 * 25 23 14 42 42 H 1.08998 * 109.47477 * 179.97438 * 25 23 14 43 43 H 1.08996 * 109.47286 * 300.00173 * 25 23 14 44 44 H 1.09005 * 109.49682 * 58.67880 * 26 10 9 45 45 H 1.08995 * 109.50286 * 298.57974 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0452 2.7628 -0.0012 6 6 5.3624 2.3988 -0.0021 7 6 6.5302 3.3006 -0.0025 8 8 6.3678 4.5055 -0.0015 9 7 7.7769 2.7887 -0.0040 10 6 8.9364 3.6841 -0.0039 11 1 8.7090 4.5728 -0.5926 12 6 9.2630 4.0948 1.4338 13 6 10.4527 5.0530 1.4296 14 7 11.5706 4.4248 0.7123 15 6 12.8025 4.3144 1.2999 16 1 13.4565 3.4972 1.0337 17 6 13.2108 5.2528 2.2377 18 7 12.6828 6.4585 2.2352 19 14 14.5096 4.8046 3.5033 20 1 14.7667 5.9726 4.3837 21 1 14.0287 3.6638 4.3234 22 1 15.7652 4.4210 2.8096 23 6 11.3399 3.9118 -0.6450 24 1 11.1345 4.7428 -1.3197 25 6 12.5804 3.1558 -1.1254 26 6 10.1389 2.9613 -0.6154 27 8 5.3812 1.0524 -0.0079 28 7 4.2638 0.5912 -0.0012 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6293 3.7594 -0.0004 35 1 7.9065 1.8274 -0.0045 36 1 8.3980 4.5887 1.8764 37 1 9.5146 3.2089 2.0169 38 1 10.7512 5.2671 2.4557 39 1 10.1709 5.9787 0.9280 40 1 12.0704 6.7183 1.5292 41 1 12.7813 2.3223 -0.4522 42 1 12.4072 2.7757 -2.1321 43 1 13.4365 3.8305 -1.1337 44 1 9.8973 2.6485 -1.6313 45 1 10.3823 2.0861 -0.0130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947554763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:29 Heat of formation + Delta-G solvation = 8.904344 kcal Electronic energy + Delta-G solvation = -27316.216955 eV Core-core repulsion = 23338.375483 eV Total energy + Delta-G solvation = -3977.841472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.26011 -39.95462 -39.36590 -37.91595 -34.97900 -33.80745 -32.78937 -32.33706 -31.62912 -31.23481 -29.34539 -26.51546 -25.36818 -24.43328 -23.70153 -23.27664 -21.99353 -21.26819 -20.48327 -19.76227 -18.81051 -18.25722 -17.25198 -17.00243 -16.35341 -16.23114 -16.08401 -15.03485 -14.92449 -14.85139 -14.32425 -13.98947 -13.82723 -13.57460 -13.52446 -13.42188 -13.23677 -13.14980 -12.73123 -12.35168 -11.77089 -11.64162 -11.59330 -11.44443 -11.33582 -11.00754 -10.75295 -10.65605 -10.40632 -10.35737 -10.18425 -10.13915 -10.00260 -9.97137 -9.66046 -9.19020 -8.96067 -8.36745 -6.88196 -6.03256 -3.22862 0.51328 1.79114 2.23061 2.36545 2.85799 3.20718 3.49784 3.53235 3.71074 3.76730 4.36496 4.43004 4.51870 4.58531 4.66406 4.75780 4.87376 5.08858 5.14666 5.19491 5.27555 5.36301 5.39136 5.43003 5.53094 5.63833 5.80039 6.00640 6.02112 6.18121 6.23252 6.27656 6.38245 6.44108 6.57319 6.58661 6.63249 6.88689 6.98776 7.06611 7.18012 7.29927 7.74299 7.93485 8.04290 8.59546 9.12465 9.86340 10.30259 11.24244 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027927 B = 0.002299 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.363690 B =12175.517038 C =12392.061828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.157 4.157 6 C -0.051 4.051 7 C 0.600 3.400 8 O -0.507 6.507 9 N -0.704 5.704 10 C 0.150 3.850 11 H 0.087 0.913 12 C -0.144 4.144 13 C 0.154 3.846 14 N -0.594 5.594 15 C -0.347 4.347 16 H 0.061 0.939 17 C -0.025 4.025 18 N -0.916 5.916 19 Si 1.063 2.937 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.293 1.293 23 C 0.173 3.827 24 H 0.026 0.974 25 C -0.133 4.133 26 C -0.135 4.135 27 O 0.116 5.884 28 N -0.392 5.392 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.190 0.810 35 H 0.404 0.596 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.020 0.980 40 H 0.269 0.731 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.124 -12.876 -6.144 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.180 4.180 6 C -0.118 4.118 7 C 0.382 3.618 8 O -0.382 6.382 9 N -0.354 5.354 10 C 0.047 3.953 11 H 0.105 0.895 12 C -0.184 4.184 13 C 0.028 3.972 14 N -0.319 5.319 15 C -0.476 4.476 16 H 0.079 0.921 17 C -0.227 4.227 18 N -0.556 5.556 19 Si 0.893 3.107 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.220 1.220 23 C 0.066 3.934 24 H 0.044 0.956 25 C -0.190 4.190 26 C -0.175 4.175 27 O 0.050 5.950 28 N -0.116 5.116 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.208 0.792 35 H 0.239 0.761 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.038 0.962 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.651 -12.555 -4.802 22.990 hybrid contribution -1.125 -0.594 -1.338 1.846 sum -19.776 -13.149 -6.140 24.529 Atomic orbital electron populations 1.21802 0.92044 1.03286 1.03762 1.22854 0.96002 0.80450 1.02511 1.86224 1.12921 1.30364 1.89252 1.21839 0.85872 0.90475 1.00791 1.22192 0.90115 0.99309 1.06412 1.24247 0.96796 0.84219 1.06516 1.16511 0.81158 0.86105 0.77987 1.90905 1.84738 1.12740 1.49801 1.46253 1.05186 1.11289 1.72652 1.21185 0.82964 0.92687 0.98423 0.89495 1.22416 0.99871 1.01389 0.94735 1.20834 0.85582 0.92207 0.98613 1.44235 1.07304 1.69967 1.10371 1.19931 0.94257 1.08914 1.24539 0.92109 1.25844 1.02137 0.92557 1.02151 1.70781 1.31742 1.16702 1.36394 0.83548 0.75332 0.75290 0.76515 1.21186 1.22139 1.22043 1.20346 0.91927 0.93246 0.87902 0.95616 1.21766 0.98597 1.00440 0.98240 1.22405 0.95465 1.00103 0.99553 1.84948 1.22861 1.18672 1.68532 1.73996 0.90435 1.22128 1.25068 0.89879 0.91267 0.91287 0.91497 0.91470 0.79248 0.76139 0.92425 0.91996 0.89945 0.96222 0.91956 0.92679 0.94288 0.91832 0.92258 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.39 16 2 C 0.06 0.43 6.38 37.16 0.24 0.67 16 3 O -0.28 -2.94 10.21 -18.89 -0.19 -3.14 16 4 C 0.21 2.41 8.00 -16.72 -0.13 2.27 16 5 C -0.16 -1.80 10.97 -38.77 -0.43 -2.22 16 6 C -0.05 -0.62 7.29 -36.36 -0.26 -0.89 16 7 C 0.60 8.39 7.78 -12.47 -0.10 8.29 16 8 O -0.51 -8.72 16.57 5.30 0.09 -8.63 16 9 N -0.70 -9.22 5.07 -54.80 -0.28 -9.49 16 10 C 0.15 2.40 2.42 -67.89 -0.16 2.24 16 11 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 12 C -0.14 -2.67 5.63 -26.83 -0.15 -2.82 16 13 C 0.15 3.51 4.66 -3.93 -0.02 3.49 16 14 N -0.59 -13.99 2.84 -165.04 -0.47 -14.46 16 15 C -0.35 -9.13 8.50 -15.06 -0.13 -9.26 16 16 H 0.06 1.59 6.27 -52.49 -0.33 1.26 16 17 C -0.02 -0.68 4.70 -17.43 -0.08 -0.76 16 18 N -0.92 -26.93 12.46 55.49 0.69 -26.24 16 19 Si 1.06 24.74 29.98 -169.99 -5.10 19.64 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.17 3.37 3.50 -67.60 -0.24 3.13 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 25 C -0.13 -2.40 7.94 37.16 0.30 -2.10 16 26 C -0.14 -2.12 4.84 -26.61 -0.13 -2.25 16 27 O 0.12 1.35 11.03 15.52 0.17 1.52 16 28 N -0.39 -4.72 11.50 30.47 0.35 -4.37 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.40 4.28 8.43 -40.82 -0.34 3.93 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 2.12 6.39 -51.93 -0.33 1.79 16 39 H 0.02 0.47 7.85 -51.93 -0.41 0.06 16 40 H 0.27 8.00 6.68 -40.82 -0.27 7.72 16 41 H 0.05 1.01 7.44 -51.92 -0.39 0.62 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -30.84 369.73 -6.81 -37.65 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.73 Total: 2.54 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.92 Total: -0.59 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.30 Total: -54.56 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.10 Total: 19.64 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.84 -6.81 -37.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947554763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.555 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds