Wall clock time and date at job start Tue Mar 31 2020 14:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46875 * 2 1 4 4 C 1.35736 * 116.99818 * 179.97438 * 3 2 1 5 5 C 1.41858 * 126.78373 * 180.02562 * 4 3 2 6 6 C 1.36661 * 103.80589 * 180.26636 * 5 4 3 7 7 C 1.47545 * 126.87599 * 179.74329 * 6 5 4 8 8 O 1.21576 * 120.00341 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00079 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46336 * 35.02572 * 10 9 7 12 12 C 1.53042 * 109.45708 * 275.06704 * 10 9 7 13 13 C 1.53193 * 109.31245 * 301.34120 * 12 10 9 14 14 N 1.46928 * 108.77820 * 305.36925 * 13 12 10 15 15 C 1.36938 * 120.62725 * 233.63225 * 14 13 12 16 16 H 1.08005 * 119.99846 * 150.14797 * 15 14 13 17 17 C 1.38813 * 120.00047 * 330.13849 * 15 14 13 18 18 N 1.31616 * 120.00219 * 344.50195 * 17 15 14 19 19 Si 1.86798 * 119.99808 * 164.50127 * 17 15 14 20 20 H 1.48501 * 109.47299 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47098 * 120.00000 * 19 17 15 22 22 H 1.48500 * 109.47137 * 240.00024 * 19 17 15 23 23 C 1.46922 * 118.73944 * 53.60491 * 14 13 12 24 24 H 1.08999 * 109.58647 * 66.17812 * 23 14 13 25 25 C 1.53002 * 109.58929 * 186.60708 * 23 14 13 26 26 C 1.53042 * 109.45980 * 154.99978 * 10 9 7 27 27 O 1.34657 * 106.24426 * 359.59082 * 6 5 4 28 28 N 1.20875 * 111.63277 * 0.44743 * 27 6 5 29 29 H 1.08993 * 109.47220 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47031 * 299.99735 * 1 2 3 31 31 H 1.08993 * 109.47361 * 59.99636 * 1 2 3 32 32 H 1.09000 * 109.47031 * 240.00265 * 2 1 3 33 33 H 1.09001 * 109.47238 * 120.00127 * 2 1 3 34 34 H 1.07996 * 128.09550 * 359.97438 * 5 4 3 35 35 H 0.97004 * 119.99575 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.49680 * 61.29751 * 12 10 9 37 37 H 1.09002 * 109.49662 * 181.39787 * 12 10 9 38 38 H 1.09002 * 109.58352 * 185.57932 * 13 12 10 39 39 H 1.09005 * 109.70078 * 65.22464 * 13 12 10 40 40 H 0.96993 * 119.99998 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.47177 * 179.29282 * 25 23 14 42 42 H 1.09008 * 109.46688 * 299.29116 * 25 23 14 43 43 H 1.08993 * 109.47162 * 59.28506 * 25 23 14 44 44 H 1.08998 * 109.49842 * 178.60549 * 26 10 9 45 45 H 1.09006 * 109.49544 * 298.66709 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0452 2.7628 0.0012 6 6 5.3624 2.3988 -0.0046 7 6 6.5302 3.3006 -0.0119 8 8 6.3679 4.5054 -0.0137 9 7 7.7770 2.7886 -0.0166 10 6 8.9364 3.6840 -0.0244 11 1 8.7123 4.5735 0.5643 12 6 9.2551 4.0928 -1.4644 13 6 9.5360 2.8379 -2.2970 14 7 10.5976 2.0627 -1.6407 15 6 11.7194 1.6910 -2.3325 16 1 12.6594 1.5729 -1.8138 17 6 11.6484 1.4659 -3.7005 18 7 10.4782 1.3076 -4.2815 19 14 13.2139 1.3878 -4.7165 20 1 14.3889 1.5947 -3.8323 21 1 13.3145 0.0577 -5.3693 22 1 13.1830 2.4481 -5.7558 23 6 10.4330 1.6944 -0.2279 24 1 9.6012 0.9973 -0.1266 25 6 11.7183 1.0419 0.2852 26 6 10.1422 2.9620 0.5815 27 8 5.3812 1.0523 0.0011 28 7 4.2639 0.5911 0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.6293 3.7595 0.0009 35 1 7.9065 1.8273 -0.0148 36 1 8.4047 4.6274 -1.8874 37 1 10.1328 4.7391 -1.4733 38 1 9.8597 3.1276 -3.2966 39 1 8.6317 2.2332 -2.3666 40 1 10.4286 1.1507 -5.2374 41 1 11.5986 0.7808 1.3366 42 1 11.9234 0.1402 -0.2920 43 1 12.5485 1.7396 0.1762 44 1 11.0115 3.6190 0.5534 45 1 9.9233 2.6924 1.6147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947554764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:32 Heat of formation + Delta-G solvation = 13.821080 kcal Electronic energy + Delta-G solvation = -27971.364433 eV Core-core repulsion = 23993.736166 eV Total energy + Delta-G solvation = -3977.628267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.05596 -39.89821 -39.19639 -37.76330 -34.50753 -33.61605 -32.53075 -32.15627 -31.47181 -30.98664 -29.62389 -26.46266 -25.22428 -24.62576 -23.54974 -23.23510 -22.03091 -21.01172 -20.63823 -19.18570 -18.69827 -18.05131 -17.05742 -16.49247 -16.19199 -16.04067 -15.58066 -15.21628 -14.84009 -14.68943 -14.12660 -14.00751 -13.76124 -13.63991 -13.38119 -13.18725 -13.02263 -12.89981 -12.50896 -12.20388 -11.91133 -11.50065 -11.44474 -11.41866 -11.24109 -11.03928 -10.71084 -10.68168 -10.42821 -10.24330 -10.13776 -10.10342 -9.94875 -9.73477 -9.47637 -9.33345 -8.80148 -8.47836 -6.64747 -5.79131 -3.23699 0.71458 1.98120 2.40195 2.58067 3.05325 3.36176 3.42874 3.44773 3.45838 3.95916 4.47573 4.53233 4.56993 4.67861 4.85726 4.90613 5.05760 5.25896 5.29525 5.33090 5.33721 5.40370 5.54229 5.55328 5.61564 5.65129 5.92226 6.07007 6.13959 6.27337 6.31279 6.41464 6.49710 6.55255 6.66526 6.75263 6.84677 6.97487 7.03646 7.33984 7.49947 7.65512 7.81850 7.95064 8.13045 8.44969 9.20460 9.83875 10.40446 11.29119 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.002995 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.143240 B = 9348.072926 C =10014.405864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.205 3.795 5 C -0.160 4.160 6 C -0.048 4.048 7 C 0.602 3.398 8 O -0.517 6.517 9 N -0.692 5.692 10 C 0.153 3.847 11 H 0.078 0.922 12 C -0.155 4.155 13 C 0.174 3.826 14 N -0.586 5.586 15 C -0.251 4.251 16 H 0.070 0.930 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.899 3.101 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.166 3.834 24 H 0.022 0.978 25 C -0.137 4.137 26 C -0.140 4.140 27 O 0.120 5.880 28 N -0.390 5.390 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.189 0.811 35 H 0.409 0.591 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.019 0.981 40 H 0.252 0.748 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 0.035 10.878 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.008 3.992 5 C -0.183 4.183 6 C -0.115 4.115 7 C 0.384 3.616 8 O -0.394 6.394 9 N -0.343 5.343 10 C 0.050 3.950 11 H 0.097 0.903 12 C -0.195 4.195 13 C 0.048 3.952 14 N -0.310 5.310 15 C -0.380 4.380 16 H 0.088 0.912 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.729 3.271 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.059 3.941 24 H 0.039 0.961 25 C -0.194 4.194 26 C -0.179 4.179 27 O 0.054 5.946 28 N -0.114 5.114 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.206 0.794 35 H 0.246 0.754 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.968 -0.274 10.701 17.598 hybrid contribution 0.484 -0.021 -0.759 0.900 sum -13.485 -0.295 9.942 16.756 Atomic orbital electron populations 1.21792 0.92160 1.03215 1.03656 1.22845 0.95879 0.80559 1.02582 1.86206 1.13015 1.30273 1.89391 1.21830 0.85817 0.90517 1.01084 1.22133 0.90081 0.99173 1.06940 1.24220 0.96752 0.84291 1.06206 1.16462 0.81219 0.86002 0.77872 1.90852 1.84920 1.12780 1.50836 1.46115 1.04797 1.11781 1.71637 1.21057 0.83647 0.92099 0.98221 0.90348 1.22588 1.00660 1.01207 0.95065 1.20719 0.90437 0.87951 0.96087 1.44130 1.20633 1.60584 1.05630 1.19188 0.87588 1.40877 0.90387 0.91223 1.25099 0.96282 0.99840 0.98301 1.70024 1.22458 1.51971 1.10059 0.86276 0.83195 0.77209 0.80383 1.20275 1.21827 1.21659 1.20409 0.95578 0.91840 0.86273 0.96088 1.21794 0.98002 1.01393 0.98214 1.22389 0.97013 1.00096 0.98433 1.84984 1.22741 1.18654 1.68215 1.74010 0.90437 1.22169 1.24749 0.89942 0.91385 0.91302 0.91411 0.91527 0.79379 0.75384 0.92592 0.91370 0.89628 0.96306 0.93755 0.94271 0.91914 0.92640 0.90304 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.52 6.38 37.16 0.24 0.76 16 3 O -0.28 -3.38 10.21 -18.92 -0.19 -3.57 16 4 C 0.20 2.75 8.00 -16.72 -0.13 2.61 16 5 C -0.16 -2.09 10.97 -38.77 -0.43 -2.51 16 6 C -0.05 -0.68 7.29 -36.36 -0.26 -0.95 16 7 C 0.60 9.38 7.78 -12.46 -0.10 9.28 16 8 O -0.52 -9.15 16.57 5.30 0.09 -9.07 16 9 N -0.69 -10.64 4.27 -54.81 -0.23 -10.87 16 10 C 0.15 2.46 2.78 -67.89 -0.19 2.27 16 11 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 12 C -0.16 -2.89 5.77 -26.61 -0.15 -3.04 16 13 C 0.17 3.93 5.02 -3.71 -0.02 3.92 16 14 N -0.59 -13.46 2.99 -164.77 -0.49 -13.95 16 15 C -0.25 -6.42 8.58 -15.06 -0.13 -6.55 16 16 H 0.07 1.75 6.23 -52.48 -0.33 1.42 16 17 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 18 N -0.90 -25.43 11.23 55.49 0.62 -24.81 16 19 Si 0.90 21.19 29.58 -169.99 -5.03 16.16 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.17 3.09 3.20 -67.60 -0.22 2.87 16 24 H 0.02 0.40 6.64 -51.93 -0.34 0.06 16 25 C -0.14 -2.37 7.95 37.16 0.30 -2.07 16 26 C -0.14 -2.16 5.07 -26.61 -0.13 -2.30 16 27 O 0.12 1.74 11.03 15.51 0.17 1.91 16 28 N -0.39 -5.62 11.50 30.47 0.35 -5.27 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.19 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.41 6.12 6.69 -40.82 -0.27 5.85 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.09 2.23 6.15 -51.93 -0.32 1.91 16 39 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 1.19 7.67 -51.92 -0.40 0.79 16 43 H 0.05 0.98 7.40 -51.93 -0.38 0.59 16 44 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -29.66 366.58 -6.75 -36.41 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.63 Total: 3.83 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.93 Total: 3.71 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.25 Total: -54.90 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.66 -6.75 -36.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947554764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.230 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds