Wall clock time and date at job start Tue Mar 31 2020 14:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46875 * 2 1 4 4 C 1.35736 * 116.99818 * 179.97438 * 3 2 1 5 5 C 1.41858 * 126.78373 * 180.02562 * 4 3 2 6 6 C 1.36661 * 103.80589 * 180.26636 * 5 4 3 7 7 C 1.47545 * 126.87599 * 179.74329 * 6 5 4 8 8 O 1.21576 * 120.00341 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00079 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46336 * 35.02572 * 10 9 7 12 12 C 1.53042 * 109.45708 * 275.06704 * 10 9 7 13 13 C 1.53193 * 109.31245 * 301.34120 * 12 10 9 14 14 N 1.46928 * 108.77820 * 305.36925 * 13 12 10 15 15 C 1.36938 * 120.62725 * 233.63225 * 14 13 12 16 16 H 1.08005 * 119.99846 * 150.14797 * 15 14 13 17 17 C 1.38813 * 120.00047 * 330.13849 * 15 14 13 18 18 N 1.31616 * 120.00219 * 344.50195 * 17 15 14 19 19 Si 1.86798 * 119.99808 * 164.50127 * 17 15 14 20 20 H 1.48501 * 109.47299 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47098 * 120.00000 * 19 17 15 22 22 H 1.48500 * 109.47137 * 240.00024 * 19 17 15 23 23 C 1.46922 * 118.73944 * 53.60491 * 14 13 12 24 24 H 1.08999 * 109.58647 * 66.17812 * 23 14 13 25 25 C 1.53002 * 109.58929 * 186.60708 * 23 14 13 26 26 C 1.53042 * 109.45980 * 154.99978 * 10 9 7 27 27 O 1.34657 * 106.24426 * 359.59082 * 6 5 4 28 28 N 1.20875 * 111.63277 * 0.44743 * 27 6 5 29 29 H 1.08993 * 109.47220 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47031 * 299.99735 * 1 2 3 31 31 H 1.08993 * 109.47361 * 59.99636 * 1 2 3 32 32 H 1.09000 * 109.47031 * 240.00265 * 2 1 3 33 33 H 1.09001 * 109.47238 * 120.00127 * 2 1 3 34 34 H 1.07996 * 128.09550 * 359.97438 * 5 4 3 35 35 H 0.97004 * 119.99575 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.49680 * 61.29751 * 12 10 9 37 37 H 1.09002 * 109.49662 * 181.39787 * 12 10 9 38 38 H 1.09002 * 109.58352 * 185.57932 * 13 12 10 39 39 H 1.09005 * 109.70078 * 65.22464 * 13 12 10 40 40 H 0.96993 * 119.99998 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.47177 * 179.29282 * 25 23 14 42 42 H 1.09008 * 109.46688 * 299.29116 * 25 23 14 43 43 H 1.08993 * 109.47162 * 59.28506 * 25 23 14 44 44 H 1.08998 * 109.49842 * 178.60549 * 26 10 9 45 45 H 1.09006 * 109.49544 * 298.66709 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0452 2.7628 0.0012 6 6 5.3624 2.3988 -0.0046 7 6 6.5302 3.3006 -0.0119 8 8 6.3679 4.5054 -0.0137 9 7 7.7770 2.7886 -0.0166 10 6 8.9364 3.6840 -0.0244 11 1 8.7123 4.5735 0.5643 12 6 9.2551 4.0928 -1.4644 13 6 9.5360 2.8379 -2.2970 14 7 10.5976 2.0627 -1.6407 15 6 11.7194 1.6910 -2.3325 16 1 12.6594 1.5729 -1.8138 17 6 11.6484 1.4659 -3.7005 18 7 10.4782 1.3076 -4.2815 19 14 13.2139 1.3878 -4.7165 20 1 14.3889 1.5947 -3.8323 21 1 13.3145 0.0577 -5.3693 22 1 13.1830 2.4481 -5.7558 23 6 10.4330 1.6944 -0.2279 24 1 9.6012 0.9973 -0.1266 25 6 11.7183 1.0419 0.2852 26 6 10.1422 2.9620 0.5815 27 8 5.3812 1.0523 0.0011 28 7 4.2639 0.5911 0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.6293 3.7595 0.0009 35 1 7.9065 1.8273 -0.0148 36 1 8.4047 4.6274 -1.8874 37 1 10.1328 4.7391 -1.4733 38 1 9.8597 3.1276 -3.2966 39 1 8.6317 2.2332 -2.3666 40 1 10.4286 1.1507 -5.2374 41 1 11.5986 0.7808 1.3366 42 1 11.9234 0.1402 -0.2920 43 1 12.5485 1.7396 0.1762 44 1 11.0115 3.6190 0.5534 45 1 9.9233 2.6924 1.6147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947554764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:31 Heat of formation + Delta-G solvation = -6.128179 kcal Electronic energy + Delta-G solvation = -27972.229497 eV Core-core repulsion = 23993.736166 eV Total energy + Delta-G solvation = -3978.493331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.13729 -41.21983 -40.10991 -39.24853 -36.02616 -34.62601 -34.13644 -33.44671 -32.55192 -32.14196 -31.24010 -27.99862 -26.86403 -25.80139 -24.56388 -24.22124 -23.64235 -22.27449 -21.95731 -20.41824 -20.15344 -19.12951 -18.24862 -18.04273 -17.22142 -17.07013 -17.01232 -16.81937 -16.19153 -15.73630 -15.66428 -15.50115 -15.29617 -14.75683 -14.69621 -14.42682 -14.11742 -14.08582 -13.55558 -13.34016 -13.20614 -12.95637 -12.85826 -12.63894 -12.44625 -12.39575 -12.28938 -12.15097 -12.11786 -11.95088 -11.66797 -11.48555 -11.39781 -11.05032 -10.94964 -10.49101 -10.48561 -10.14275 -8.55047 -7.79604 -5.24857 -0.41014 0.92511 1.43004 1.47083 1.47615 1.50553 1.58932 1.84793 2.27267 2.55371 2.93279 3.36127 3.56708 3.65466 3.72591 3.91245 3.91308 3.98188 4.08024 4.10529 4.23306 4.26152 4.47708 4.53477 4.64383 4.69385 4.78482 4.82774 4.85011 4.94970 4.99626 5.05533 5.14478 5.14972 5.20243 5.44433 5.47939 5.57978 5.61387 5.77867 5.81315 5.83665 6.25742 6.48254 6.81853 6.92589 7.23169 7.95923 8.46666 9.26482 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.002995 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.143240 B = 9348.072926 C =10014.405864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.286 6.286 4 C 0.205 3.795 5 C -0.150 4.150 6 C -0.058 4.058 7 C 0.608 3.392 8 O -0.538 6.538 9 N -0.690 5.690 10 C 0.159 3.841 11 H 0.094 0.906 12 C -0.143 4.143 13 C 0.185 3.815 14 N -0.601 5.601 15 C -0.242 4.242 16 H 0.076 0.924 17 C -0.054 4.054 18 N -0.936 5.936 19 Si 0.956 3.044 20 H -0.264 1.264 21 H -0.298 1.298 22 H -0.297 1.297 23 C 0.156 3.844 24 H 0.023 0.977 25 C -0.131 4.131 26 C -0.126 4.126 27 O 0.112 5.888 28 N -0.401 5.401 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.208 0.792 35 H 0.411 0.589 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.045 0.955 39 H -0.003 1.003 40 H 0.244 0.756 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.927 0.283 13.067 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.194 6.194 4 C 0.007 3.993 5 C -0.173 4.173 6 C -0.124 4.124 7 C 0.391 3.609 8 O -0.417 6.417 9 N -0.341 5.341 10 C 0.055 3.945 11 H 0.112 0.888 12 C -0.183 4.183 13 C 0.059 3.941 14 N -0.325 5.325 15 C -0.373 4.373 16 H 0.094 0.906 17 C -0.249 4.249 18 N -0.583 5.583 19 Si 0.786 3.214 20 H -0.188 1.188 21 H -0.226 1.226 22 H -0.225 1.225 23 C 0.051 3.949 24 H 0.040 0.960 25 C -0.188 4.188 26 C -0.165 4.165 27 O 0.047 5.953 28 N -0.127 5.127 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.225 0.775 35 H 0.249 0.751 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.015 0.985 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.309 -0.030 12.932 19.287 hybrid contribution 0.510 -0.148 -1.387 1.485 sum -13.800 -0.178 11.545 17.993 Atomic orbital electron populations 1.21822 0.89803 1.04703 1.03862 1.23131 0.97714 0.79328 1.02486 1.86232 1.12050 1.31984 1.89091 1.21988 0.86419 0.90441 1.00407 1.22418 0.89579 0.99921 1.05382 1.24016 0.96714 0.84253 1.07412 1.16500 0.81424 0.85818 0.77119 1.90839 1.85276 1.13666 1.51879 1.46075 1.04726 1.11808 1.71471 1.20994 0.84228 0.92968 0.96302 0.88756 1.22403 1.00591 0.98966 0.96376 1.20416 0.89346 0.89284 0.95085 1.44365 1.19921 1.60900 1.07346 1.19518 0.88749 1.38447 0.90567 0.90623 1.25767 0.98492 1.01047 0.99621 1.70178 1.24215 1.54376 1.09559 0.85363 0.80850 0.76293 0.78906 1.18821 1.22564 1.22453 1.20694 0.96455 0.93686 0.84097 0.95982 1.21736 0.96988 0.99983 1.00097 1.22265 0.96684 0.98106 0.99467 1.84970 1.22899 1.18734 1.68699 1.73991 0.90627 1.22649 1.25407 0.87793 0.90948 0.91289 0.91862 0.91295 0.77520 0.75143 0.92961 0.91162 0.93686 0.98462 0.94672 0.90483 0.94296 0.93039 0.89937 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 71.98 0.74 -0.83 16 2 C 0.05 0.83 6.38 71.98 0.46 1.29 16 3 O -0.29 -6.54 10.21 -90.60 -0.92 -7.46 16 4 C 0.20 5.30 8.00 85.78 0.69 5.98 16 5 C -0.15 -3.73 10.97 22.80 0.25 -3.48 16 6 C -0.06 -1.59 7.29 24.36 0.18 -1.42 16 7 C 0.61 18.27 7.78 86.70 0.67 18.94 16 8 O -0.54 -18.33 16.57 -3.96 -0.07 -18.40 16 9 N -0.69 -20.27 4.27 -445.58 -1.90 -22.17 16 10 C 0.16 4.76 2.78 45.02 0.13 4.88 16 11 H 0.09 2.64 7.58 -2.39 -0.02 2.63 16 12 C -0.14 -5.27 5.77 30.67 0.18 -5.10 16 13 C 0.18 8.55 5.02 86.36 0.43 8.98 16 14 N -0.60 -27.57 2.99 -675.21 -2.02 -29.58 16 15 C -0.24 -12.44 8.58 84.03 0.72 -11.72 16 16 H 0.08 3.74 6.23 -2.91 -0.02 3.72 16 17 C -0.05 -2.96 4.94 84.86 0.42 -2.55 16 18 N -0.94 -54.83 11.23 21.65 0.24 -54.58 16 19 Si 0.96 44.38 29.58 68.60 2.03 46.40 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 23 C 0.16 5.54 3.20 44.98 0.14 5.68 16 24 H 0.02 0.80 6.64 -2.39 -0.02 0.79 16 25 C -0.13 -4.22 7.95 71.98 0.57 -3.65 16 26 C -0.13 -3.50 5.07 30.67 0.16 -3.35 16 27 O 0.11 3.20 11.03 65.69 0.72 3.92 16 28 N -0.40 -11.34 11.50 -172.02 -1.98 -13.32 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.21 4.21 8.06 -2.91 -0.02 4.18 16 35 H 0.41 11.85 6.69 -92.70 -0.62 11.23 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.04 2.44 6.15 -2.39 -0.01 2.43 16 39 H 0.00 -0.13 7.74 -2.38 -0.02 -0.15 16 40 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.04 1.42 7.67 -2.38 -0.02 1.40 16 43 H 0.05 1.69 7.40 -2.39 -0.02 1.67 16 44 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -64.95 366.58 2.24 -62.71 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.39 Total: 18.80 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 5.74 Total: 13.67 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -5.65 Total: -119.65 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.27 Total: -21.94 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.95 2.24 -62.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947554764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.586 kcal (2) G-P(sol) polarization free energy of solvation -64.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds