Wall clock time and date at job start Tue Mar 31 2020 14:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99979 * 2 1 4 4 C 1.50704 * 109.47158 * 179.97438 * 3 2 1 5 5 C 1.35313 * 126.66274 * 89.99785 * 4 3 2 6 6 C 1.42267 * 103.92276 * 180.02562 * 5 4 3 7 7 C 1.48328 * 126.94280 * 179.97438 * 6 5 4 8 8 O 1.21490 * 119.99788 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00346 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00117 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.45435 * 34.96667 * 10 9 7 12 12 C 1.53046 * 109.45720 * 274.99880 * 10 9 7 13 13 C 1.53198 * 109.31324 * 178.61379 * 12 10 9 14 14 N 1.46930 * 108.77203 * 54.63508 * 13 12 10 15 15 C 1.36935 * 120.62552 * 126.41664 * 14 13 12 16 16 H 1.08002 * 119.99539 * 209.00842 * 15 14 13 17 17 C 1.38814 * 120.00426 * 29.01091 * 15 14 13 18 18 N 1.31612 * 119.99931 * 15.02171 * 17 15 14 19 19 Si 1.86801 * 120.00047 * 195.02366 * 17 15 14 20 20 H 1.48501 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47119 * 119.99713 * 19 17 15 22 22 H 1.48497 * 109.46922 * 239.99906 * 19 17 15 23 23 C 1.46923 * 118.73936 * 306.39378 * 14 13 12 24 24 H 1.09007 * 109.58629 * 293.81850 * 23 14 13 25 25 C 1.53002 * 109.58650 * 173.39768 * 23 14 13 26 26 C 1.53036 * 109.46123 * 154.93406 * 10 9 7 27 27 N 1.30990 * 106.12316 * 0.26032 * 6 5 4 28 28 O 1.20914 * 111.43722 * 359.53597 * 27 6 5 29 29 H 1.08996 * 109.47198 * 60.00145 * 1 2 3 30 30 H 1.08997 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46847 * 300.00094 * 1 2 3 32 32 H 1.08998 * 109.47138 * 59.99962 * 3 2 1 33 33 H 1.08999 * 109.46611 * 299.99911 * 3 2 1 34 34 H 1.08002 * 128.04235 * 0.02562 * 5 4 3 35 35 H 0.97002 * 119.99570 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.49769 * 58.66853 * 12 10 9 37 37 H 1.08996 * 109.49790 * 298.56606 * 12 10 9 38 38 H 1.08998 * 109.58822 * 174.42573 * 13 12 10 39 39 H 1.08999 * 109.58760 * 294.71148 * 13 12 10 40 40 H 0.97000 * 120.00190 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.47119 * 59.99766 * 25 23 14 42 42 H 1.08997 * 109.47533 * 179.97438 * 25 23 14 43 43 H 1.09002 * 109.46826 * 300.00159 * 25 23 14 44 44 H 1.08998 * 109.50128 * 61.43270 * 26 10 9 45 45 H 1.08997 * 109.52765 * 301.35207 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.3184 1.1225 -1.0845 6 6 5.6262 1.0184 -0.5340 7 6 6.9028 0.9163 -1.2822 8 8 6.8966 0.9169 -2.4971 9 7 8.0699 0.8240 -0.6143 10 6 9.3308 0.7238 -1.3533 11 1 9.2662 1.3195 -2.2638 12 6 9.5927 -0.7392 -1.7186 13 6 10.8942 -0.8358 -2.5210 14 7 11.9733 -0.2039 -1.7497 15 6 13.1311 -0.8847 -1.4829 16 1 13.6946 -0.6620 -0.5888 17 6 13.5805 -1.8608 -2.3615 18 7 13.0787 -1.9345 -3.5760 19 14 14.8976 -3.0699 -1.8202 20 1 15.2927 -2.7769 -0.4190 21 1 14.3645 -4.4533 -1.9047 22 1 16.0822 -2.9409 -2.7063 23 6 11.7867 1.1724 -1.2705 24 1 11.7406 1.8524 -2.1212 25 6 12.9543 1.5618 -0.3616 26 6 10.4753 1.2466 -0.4822 27 7 5.4747 1.0246 0.7671 28 8 4.3098 1.1230 1.0760 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 4.0349 1.1451 -2.1263 35 1 8.0749 0.8240 0.3557 36 1 8.7660 -1.1177 -2.3195 37 1 9.6821 -1.3311 -0.8078 38 1 11.1370 -1.8835 -2.6986 39 1 10.7745 -0.3217 -3.4747 40 1 13.3930 -2.6164 -4.1901 41 1 13.8876 1.4963 -0.9208 42 1 12.8142 2.5832 -0.0076 43 1 12.9930 0.8835 0.4908 44 1 10.5564 0.6359 0.4170 45 1 10.2770 2.2812 -0.2025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947787329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:35 Heat of formation + Delta-G solvation = 5.861365 kcal Electronic energy + Delta-G solvation = -27206.922233 eV Core-core repulsion = 23228.948807 eV Total energy + Delta-G solvation = -3977.973426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.34687 -39.73218 -38.46806 -37.67759 -34.69196 -34.26814 -33.07082 -32.36729 -31.25867 -29.52363 -28.23010 -26.45560 -26.10490 -25.42680 -24.24525 -22.93358 -21.95802 -20.84766 -20.01859 -19.21117 -18.20658 -18.11286 -16.96188 -16.76002 -16.37577 -16.28002 -15.84720 -15.38787 -15.08614 -14.71723 -14.22524 -13.95236 -13.84917 -13.62116 -13.40201 -13.27389 -12.83955 -12.75867 -12.67674 -12.05357 -11.83961 -11.60325 -11.23034 -11.12743 -10.94809 -10.91185 -10.68808 -10.63389 -10.33884 -10.31069 -10.24960 -10.09783 -10.01933 -9.95562 -9.74547 -9.41015 -8.78801 -8.42359 -6.63886 -5.75753 -3.19731 0.82778 1.35055 2.47794 2.97505 3.17402 3.38454 3.46308 3.47744 3.47953 3.79901 4.20227 4.48026 4.50228 4.64312 4.75147 4.83277 4.86072 5.06260 5.13574 5.19287 5.27168 5.37067 5.43575 5.56532 5.57234 5.76524 5.97158 6.15349 6.20830 6.31770 6.37903 6.42403 6.45547 6.50369 6.62781 6.78444 6.83898 7.02377 7.10194 7.38517 7.49252 7.71077 7.77851 7.84149 8.17631 8.48157 9.23653 9.87183 10.43954 11.32926 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025135 B = 0.002333 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.703582 B =11999.012066 C =12435.210171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.146 3.854 4 C -0.044 4.044 5 C -0.153 4.153 6 C -0.022 4.022 7 C 0.593 3.407 8 O -0.520 6.520 9 N -0.706 5.706 10 C 0.150 3.850 11 H 0.085 0.915 12 C -0.148 4.148 13 C 0.175 3.825 14 N -0.588 5.588 15 C -0.249 4.249 16 H 0.071 0.929 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.172 3.828 24 H 0.028 0.972 25 C -0.135 4.135 26 C -0.135 4.135 27 N -0.324 5.324 28 O 0.130 5.870 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.184 0.816 35 H 0.401 0.599 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.021 0.979 40 H 0.253 0.747 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.549 8.484 8.652 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.069 3.931 4 C -0.107 4.107 5 C -0.175 4.175 6 C -0.182 4.182 7 C 0.376 3.624 8 O -0.395 6.395 9 N -0.356 5.356 10 C 0.047 3.953 11 H 0.103 0.897 12 C -0.188 4.188 13 C 0.048 3.952 14 N -0.311 5.311 15 C -0.379 4.379 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.064 3.936 24 H 0.046 0.954 25 C -0.193 4.193 26 C -0.175 4.175 27 N -0.024 5.024 28 O 0.052 5.948 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.201 0.799 35 H 0.236 0.764 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.423 8.121 8.613 25.356 hybrid contribution 0.022 -0.511 -0.075 0.517 sum -22.401 7.610 8.538 25.152 Atomic orbital electron populations 1.22829 0.79652 1.03564 1.00446 1.87994 1.20584 1.26246 1.95559 1.20640 0.83044 0.86236 1.03215 1.23902 0.95035 1.05981 0.85804 1.22515 0.89807 1.03626 1.01577 1.23711 0.97232 1.07223 0.89987 1.16868 0.81552 0.77507 0.86478 1.90818 1.86285 1.50022 1.12334 1.46241 1.06165 1.72506 1.10657 1.21178 0.80358 0.98565 0.95171 0.89686 1.22603 1.00804 0.94135 1.01280 1.20762 0.83076 1.00450 0.90870 1.44182 1.15146 1.08576 1.63195 1.19216 1.00422 1.15447 1.02821 0.91140 1.25107 0.98502 1.01413 0.94732 1.70019 1.45200 1.34989 1.04505 0.86246 0.81357 0.81313 0.77989 1.20293 1.21652 1.21778 1.20358 0.91105 0.88193 0.93940 0.95449 1.21792 0.99323 0.98490 0.99688 1.22400 0.96144 0.99572 0.99342 1.74191 0.97209 1.15174 1.15798 1.84782 1.11472 1.65282 1.33242 0.93476 0.88986 0.93490 0.90361 0.89262 0.79898 0.76442 0.92792 0.92516 0.89024 0.96073 0.93697 0.91786 0.94274 0.92748 0.91647 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.38 -3.02 10.69 -35.23 -0.38 -3.40 16 3 C 0.15 0.86 6.50 36.01 0.23 1.09 16 4 C -0.04 -0.42 7.10 -35.35 -0.25 -0.67 16 5 C -0.15 -1.71 10.92 -39.08 -0.43 -2.14 16 6 C -0.02 -0.31 7.19 -82.53 -0.59 -0.90 16 7 C 0.59 9.78 7.81 -12.11 -0.09 9.68 16 8 O -0.52 -10.10 16.61 5.37 0.09 -10.02 16 9 N -0.71 -11.11 5.07 -54.56 -0.28 -11.39 16 10 C 0.15 2.71 2.42 -67.89 -0.16 2.54 16 11 H 0.09 1.68 7.57 -51.93 -0.39 1.28 16 12 C -0.15 -3.02 5.65 -26.61 -0.15 -3.18 16 13 C 0.17 4.27 5.29 -3.71 -0.02 4.25 16 14 N -0.59 -14.47 2.99 -164.77 -0.49 -14.97 16 15 C -0.25 -6.67 8.60 -15.06 -0.13 -6.80 16 16 H 0.07 1.83 6.21 -52.49 -0.33 1.51 16 17 C 0.00 0.03 4.96 -17.43 -0.09 -0.06 16 18 N -0.90 -26.30 11.14 55.49 0.62 -25.68 16 19 Si 0.90 21.72 29.58 -169.99 -5.03 16.69 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.17 3.52 3.50 -67.60 -0.24 3.28 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 C -0.14 -2.51 7.94 37.16 0.30 -2.21 16 26 C -0.13 -2.32 4.84 -26.61 -0.13 -2.45 16 27 N -0.32 -4.25 11.84 33.30 0.39 -3.86 16 28 O 0.13 1.46 11.18 17.25 0.19 1.65 16 29 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.40 5.58 8.36 -40.82 -0.34 5.23 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 2.50 6.06 -51.93 -0.31 2.18 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.06 1.28 7.62 -51.93 -0.40 0.88 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 1.01 7.45 -51.93 -0.39 0.63 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -32.49 371.49 -6.71 -39.20 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.79 Total: 2.49 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.64 Total: 3.69 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.24 Total: -55.89 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.49 -6.71 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947787329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.057 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds