Wall clock time and date at job start Tue Mar 31 2020 14:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99979 * 2 1 4 4 C 1.50704 * 109.47158 * 179.97438 * 3 2 1 5 5 C 1.35313 * 126.66274 * 89.99785 * 4 3 2 6 6 C 1.42267 * 103.92276 * 180.02562 * 5 4 3 7 7 C 1.48328 * 126.94280 * 179.97438 * 6 5 4 8 8 O 1.21490 * 119.99788 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00346 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00117 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.45435 * 34.96667 * 10 9 7 12 12 C 1.53046 * 109.45720 * 274.99880 * 10 9 7 13 13 C 1.53198 * 109.31324 * 178.61379 * 12 10 9 14 14 N 1.46930 * 108.77203 * 54.63508 * 13 12 10 15 15 C 1.36935 * 120.62552 * 126.41664 * 14 13 12 16 16 H 1.08002 * 119.99539 * 209.00842 * 15 14 13 17 17 C 1.38814 * 120.00426 * 29.01091 * 15 14 13 18 18 N 1.31612 * 119.99931 * 15.02171 * 17 15 14 19 19 Si 1.86801 * 120.00047 * 195.02366 * 17 15 14 20 20 H 1.48501 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47119 * 119.99713 * 19 17 15 22 22 H 1.48497 * 109.46922 * 239.99906 * 19 17 15 23 23 C 1.46923 * 118.73936 * 306.39378 * 14 13 12 24 24 H 1.09007 * 109.58629 * 293.81850 * 23 14 13 25 25 C 1.53002 * 109.58650 * 173.39768 * 23 14 13 26 26 C 1.53036 * 109.46123 * 154.93406 * 10 9 7 27 27 N 1.30990 * 106.12316 * 0.26032 * 6 5 4 28 28 O 1.20914 * 111.43722 * 359.53597 * 27 6 5 29 29 H 1.08996 * 109.47198 * 60.00145 * 1 2 3 30 30 H 1.08997 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46847 * 300.00094 * 1 2 3 32 32 H 1.08998 * 109.47138 * 59.99962 * 3 2 1 33 33 H 1.08999 * 109.46611 * 299.99911 * 3 2 1 34 34 H 1.08002 * 128.04235 * 0.02562 * 5 4 3 35 35 H 0.97002 * 119.99570 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.49769 * 58.66853 * 12 10 9 37 37 H 1.08996 * 109.49790 * 298.56606 * 12 10 9 38 38 H 1.08998 * 109.58822 * 174.42573 * 13 12 10 39 39 H 1.08999 * 109.58760 * 294.71148 * 13 12 10 40 40 H 0.97000 * 120.00190 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.47119 * 59.99766 * 25 23 14 42 42 H 1.08997 * 109.47533 * 179.97438 * 25 23 14 43 43 H 1.09002 * 109.46826 * 300.00159 * 25 23 14 44 44 H 1.08998 * 109.50128 * 61.43270 * 26 10 9 45 45 H 1.08997 * 109.52765 * 301.35207 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.3184 1.1225 -1.0845 6 6 5.6262 1.0184 -0.5340 7 6 6.9028 0.9163 -1.2822 8 8 6.8966 0.9169 -2.4971 9 7 8.0699 0.8240 -0.6143 10 6 9.3308 0.7238 -1.3533 11 1 9.2662 1.3195 -2.2638 12 6 9.5927 -0.7392 -1.7186 13 6 10.8942 -0.8358 -2.5210 14 7 11.9733 -0.2039 -1.7497 15 6 13.1311 -0.8847 -1.4829 16 1 13.6946 -0.6620 -0.5888 17 6 13.5805 -1.8608 -2.3615 18 7 13.0787 -1.9345 -3.5760 19 14 14.8976 -3.0699 -1.8202 20 1 15.2927 -2.7769 -0.4190 21 1 14.3645 -4.4533 -1.9047 22 1 16.0822 -2.9409 -2.7063 23 6 11.7867 1.1724 -1.2705 24 1 11.7406 1.8524 -2.1212 25 6 12.9543 1.5618 -0.3616 26 6 10.4753 1.2466 -0.4822 27 7 5.4747 1.0246 0.7671 28 8 4.3098 1.1230 1.0760 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 4.0349 1.1451 -2.1263 35 1 8.0749 0.8240 0.3557 36 1 8.7660 -1.1177 -2.3195 37 1 9.6821 -1.3311 -0.8078 38 1 11.1370 -1.8835 -2.6986 39 1 10.7745 -0.3217 -3.4747 40 1 13.3930 -2.6164 -4.1901 41 1 13.8876 1.4963 -0.9208 42 1 12.8142 2.5832 -0.0076 43 1 12.9930 0.8835 0.4908 44 1 10.5564 0.6359 0.4170 45 1 10.2770 2.2812 -0.2025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947787329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:34 Heat of formation + Delta-G solvation = -16.884019 kcal Electronic energy + Delta-G solvation = -27207.908547 eV Core-core repulsion = 23228.948807 eV Total energy + Delta-G solvation = -3978.959740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.27835 -41.13512 -39.32723 -38.91095 -36.27692 -35.24744 -34.30993 -33.81185 -32.91123 -31.30033 -28.72618 -28.10396 -27.01777 -26.51451 -25.71909 -23.97559 -23.62642 -22.33083 -21.46398 -20.77703 -19.09252 -19.04048 -18.35471 -17.92989 -17.36652 -17.20365 -16.89443 -16.69260 -16.16560 -16.12502 -15.75119 -15.57612 -15.19467 -14.94448 -14.80840 -14.60967 -14.40183 -13.83257 -13.36387 -13.22469 -13.00593 -12.77586 -12.72843 -12.66857 -12.63521 -12.40190 -12.38716 -12.09213 -11.92671 -11.76862 -11.67106 -11.60446 -11.56745 -11.15163 -10.76810 -10.70304 -10.58355 -10.20562 -8.66859 -7.84588 -5.30946 -0.10692 0.44164 1.45919 1.48175 1.58012 1.67023 1.83034 1.95638 2.51815 2.74819 2.98671 3.31615 3.45716 3.57649 3.77396 3.78587 3.97934 3.99974 4.07952 4.20497 4.33631 4.41550 4.50590 4.56797 4.58468 4.65428 4.67166 4.71137 4.75245 4.76869 4.91341 4.96553 5.00162 5.01892 5.11639 5.32490 5.36427 5.49309 5.53984 5.69049 5.72535 6.10977 6.23471 6.42302 6.81681 6.92883 7.16028 7.87416 8.40186 9.23063 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025135 B = 0.002333 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.703582 B =11999.012066 C =12435.210171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.144 3.856 4 C -0.025 4.025 5 C -0.165 4.165 6 C -0.046 4.046 7 C 0.594 3.406 8 O -0.556 6.556 9 N -0.696 5.696 10 C 0.161 3.839 11 H 0.067 0.933 12 C -0.132 4.132 13 C 0.184 3.816 14 N -0.603 5.603 15 C -0.246 4.246 16 H 0.081 0.919 17 C -0.059 4.059 18 N -0.940 5.940 19 Si 0.964 3.036 20 H -0.262 1.262 21 H -0.295 1.295 22 H -0.295 1.295 23 C 0.160 3.840 24 H 0.016 0.984 25 C -0.127 4.127 26 C -0.119 4.119 27 N -0.334 5.334 28 O 0.139 5.861 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.195 0.805 35 H 0.414 0.586 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.058 0.942 39 H -0.008 1.008 40 H 0.247 0.753 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.364 9.838 11.234 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C 0.067 3.933 4 C -0.088 4.088 5 C -0.188 4.188 6 C -0.203 4.203 7 C 0.379 3.621 8 O -0.433 6.433 9 N -0.346 5.346 10 C 0.057 3.943 11 H 0.085 0.915 12 C -0.173 4.173 13 C 0.057 3.943 14 N -0.327 5.327 15 C -0.377 4.377 16 H 0.098 0.902 17 C -0.253 4.253 18 N -0.587 5.587 19 Si 0.793 3.207 20 H -0.186 1.186 21 H -0.222 1.222 22 H -0.222 1.222 23 C 0.054 3.946 24 H 0.034 0.966 25 C -0.184 4.184 26 C -0.159 4.159 27 N -0.032 5.032 28 O 0.058 5.942 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.212 0.788 35 H 0.250 0.750 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.010 0.990 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -24.236 9.502 11.251 28.360 hybrid contribution 0.452 -0.869 -0.858 1.302 sum -23.784 8.634 10.393 27.353 Atomic orbital electron populations 1.23007 0.77840 1.04168 1.01925 1.87931 1.22591 1.27330 1.95907 1.20987 0.80315 0.86111 1.05900 1.24524 0.96433 1.03437 0.84404 1.22733 0.88946 1.04315 1.02774 1.23433 0.96843 1.09467 0.90582 1.17172 0.82391 0.76388 0.86195 1.90797 1.86947 1.51586 1.13987 1.45989 1.05266 1.72297 1.11082 1.20841 0.81972 0.96261 0.95224 0.91480 1.22347 0.98211 0.96286 1.00425 1.20453 0.85174 0.98038 0.90636 1.44434 1.14667 1.10467 1.63117 1.19584 1.00511 1.14953 1.02617 0.90175 1.25881 1.01041 1.03523 0.94881 1.70190 1.47082 1.35765 1.05698 0.85240 0.78620 0.78708 0.78119 1.18617 1.22245 1.22245 1.20635 0.93935 0.85639 0.94397 0.96601 1.21712 0.97192 1.00813 0.98712 1.22217 0.93468 1.01756 0.98452 1.74181 0.98275 1.15397 1.15306 1.84755 1.11124 1.64437 1.33854 0.92039 0.88957 0.91937 0.87710 0.86512 0.78775 0.74981 0.93503 0.92229 0.92387 0.98985 0.94400 0.93888 0.90406 0.92719 0.90805 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.42 -5.52 10.69 -148.98 -1.59 -7.11 16 3 C 0.14 1.21 6.50 71.24 0.46 1.68 16 4 C -0.02 -0.41 7.10 25.01 0.18 -0.23 16 5 C -0.17 -3.46 10.92 22.60 0.25 -3.22 16 6 C -0.05 -1.23 7.19 42.96 0.31 -0.92 16 7 C 0.59 19.42 7.81 86.93 0.68 20.10 16 8 O -0.56 -21.97 16.61 -3.68 -0.06 -22.03 16 9 N -0.70 -21.22 5.07 -444.83 -2.26 -23.48 16 10 C 0.16 5.74 2.42 45.02 0.11 5.85 16 11 H 0.07 2.68 7.57 -2.39 -0.02 2.66 16 12 C -0.13 -5.53 5.65 30.68 0.17 -5.35 16 13 C 0.18 9.37 5.29 86.36 0.46 9.83 16 14 N -0.60 -30.14 2.99 -675.21 -2.02 -32.16 16 15 C -0.25 -13.26 8.60 84.03 0.72 -12.54 16 16 H 0.08 4.10 6.21 -2.91 -0.02 4.08 16 17 C -0.06 -3.31 4.96 84.86 0.42 -2.89 16 18 N -0.94 -57.07 11.14 21.65 0.24 -56.83 16 19 Si 0.96 45.42 29.58 68.60 2.03 47.45 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 C 0.16 6.44 3.50 44.98 0.16 6.60 16 24 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 25 C -0.13 -4.43 7.94 71.98 0.57 -3.86 16 26 C -0.12 -3.86 4.84 30.67 0.15 -3.71 16 27 N -0.33 -8.23 11.84 -49.50 -0.59 -8.82 16 28 O 0.14 2.81 11.18 71.90 0.80 3.62 16 29 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.20 3.48 8.06 -2.91 -0.02 3.45 16 35 H 0.41 10.71 8.36 -92.71 -0.78 9.94 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.06 3.34 6.06 -2.39 -0.01 3.32 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.04 1.66 7.62 -2.39 -0.02 1.64 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 1.90 7.45 -2.39 -0.02 1.88 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -73.19 371.49 2.67 -70.52 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.23 Total: 16.11 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 5.88 Total: 12.73 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -4.62 Total: -121.28 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.85 Total: -25.53 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -73.19 2.67 -70.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947787329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.637 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds