Wall clock time and date at job start Tue Mar 31 2020 14:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00022 * 2 1 4 4 C 1.50704 * 109.47179 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.38067 * 89.99905 * 4 3 2 6 6 C 1.36063 * 108.47644 * 179.97438 * 5 4 3 7 7 C 1.47419 * 126.44999 * 179.97438 * 6 5 4 8 8 O 1.21608 * 120.00275 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99886 * 0.02824 * 7 6 5 10 10 C 1.46499 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.45141 * 324.96616 * 10 9 7 12 12 C 1.53044 * 109.46007 * 84.93549 * 10 9 7 13 13 C 1.52755 * 109.38132 * 181.25927 * 12 10 9 14 14 N 1.46923 * 109.00900 * 305.58408 * 13 12 10 15 15 C 1.36943 * 120.62930 * 233.58508 * 14 13 12 16 16 H 1.08004 * 119.99729 * 152.16663 * 15 14 13 17 17 C 1.38806 * 119.99865 * 332.16538 * 15 14 13 18 18 N 1.31614 * 120.00503 * 342.77410 * 17 15 14 19 19 Si 1.86807 * 119.99640 * 162.77186 * 17 15 14 20 20 H 1.48505 * 109.47082 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47280 * 300.00267 * 19 17 15 22 22 H 1.48498 * 109.46916 * 60.00563 * 19 17 15 23 23 C 1.46927 * 118.73893 * 53.31139 * 14 13 12 24 24 H 1.08999 * 109.58786 * 186.85311 * 23 14 13 25 25 C 1.52999 * 109.58655 * 66.57457 * 23 14 13 26 26 C 1.53046 * 109.45791 * 204.99746 * 10 9 7 27 27 C 1.36096 * 107.10552 * 0.22514 * 6 5 4 28 28 O 1.34049 * 125.37371 * 269.95306 * 4 3 2 29 29 H 1.09004 * 109.46757 * 60.00921 * 1 2 3 30 30 H 1.08995 * 109.46868 * 180.02562 * 1 2 3 31 31 H 1.08989 * 109.47177 * 300.00361 * 1 2 3 32 32 H 1.08992 * 109.47416 * 59.99598 * 3 2 1 33 33 H 1.09006 * 109.46639 * 299.99387 * 3 2 1 34 34 H 0.97006 * 119.99849 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.49256 * 301.33300 * 12 10 9 36 36 H 1.09002 * 109.49531 * 61.42998 * 12 10 9 37 37 H 1.09005 * 109.50719 * 185.70148 * 13 12 10 38 38 H 1.09006 * 109.43430 * 65.42411 * 13 12 10 39 39 H 0.97004 * 120.00231 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.47413 * 59.99715 * 25 23 14 41 41 H 1.08996 * 109.47336 * 180.02562 * 25 23 14 42 42 H 1.09006 * 109.47238 * 300.00226 * 25 23 14 43 43 H 1.09004 * 109.49497 * 58.66620 * 26 10 9 44 44 H 1.08999 * 109.49861 * 298.56732 * 26 10 9 45 45 H 1.08001 * 126.52612 * 179.76879 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2630 1.1269 -1.0584 6 6 5.5606 1.0247 -0.6622 7 6 6.7401 0.9308 -1.5416 8 8 7.8529 0.8429 -1.0592 9 7 6.5851 0.9425 -2.8805 10 6 7.7572 0.8498 -3.7544 11 1 8.5944 1.3758 -3.2957 12 6 8.1279 -0.6213 -3.9557 13 6 9.3689 -0.7147 -4.8416 14 7 9.1231 0.0220 -6.0888 15 6 9.3040 -0.5831 -7.3038 16 1 8.7336 -0.2555 -8.1605 17 6 10.2204 -1.6174 -7.4344 18 7 11.1453 -1.7973 -6.5155 19 14 10.1409 -2.7543 -8.9146 20 1 11.2220 -3.7679 -8.8188 21 1 8.8226 -3.4371 -8.9441 22 1 10.3156 -1.9611 -10.1578 23 6 8.6737 1.4185 -6.0074 24 1 8.4217 1.7800 -7.0044 25 6 9.7889 2.2826 -5.4153 26 6 7.4352 1.4863 -5.1084 27 6 5.5645 1.0199 0.6987 28 8 4.2858 1.1263 1.0940 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 5.6974 1.0123 -3.2653 35 1 8.3344 -1.0801 -2.9887 36 1 7.3003 -1.1425 -4.4369 37 1 9.5755 -1.7604 -5.0696 38 1 10.2204 -0.2771 -4.3204 39 1 11.7855 -2.5203 -6.6066 40 1 10.6718 2.2226 -6.0518 41 1 9.4534 3.3179 -5.3554 42 1 10.0359 1.9227 -4.4165 43 1 7.1486 2.5277 -4.9619 44 1 6.6141 0.9452 -5.5788 45 1 6.4313 0.9469 1.3388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947877773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:51 Heat of formation + Delta-G solvation = -33.924373 kcal Electronic energy + Delta-G solvation = -27438.403604 eV Core-core repulsion = 23458.704939 eV Total energy + Delta-G solvation = -3979.698665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.70699 -39.62541 -38.41414 -37.69680 -35.14381 -34.43840 -32.47804 -31.80827 -30.74776 -29.51069 -28.17993 -26.92992 -26.18223 -24.83334 -23.83470 -22.12722 -21.81815 -21.36407 -20.35628 -18.80769 -17.94911 -17.57151 -16.93390 -16.57670 -16.37678 -16.16834 -16.02783 -15.74236 -14.72654 -14.58343 -14.23420 -13.86539 -13.71380 -13.65772 -13.34704 -13.00306 -12.91957 -12.62119 -12.45894 -12.18404 -12.07229 -11.53987 -11.38029 -11.12253 -11.03711 -10.90375 -10.76092 -10.59072 -10.36337 -10.31435 -10.17133 -10.12878 -9.87242 -9.67887 -9.38487 -9.33572 -8.67811 -8.36712 -6.65363 -5.74806 -3.17072 0.84800 1.64096 2.18616 3.06557 3.33232 3.40130 3.42303 3.47248 3.48250 3.79982 4.39771 4.52050 4.56543 4.67918 4.79760 4.82273 4.89806 5.20476 5.22511 5.31686 5.38360 5.43009 5.43688 5.63849 5.73485 5.83807 6.05691 6.11369 6.30084 6.34768 6.43585 6.47174 6.50104 6.63178 6.69778 6.83405 6.90258 6.98463 7.15970 7.20092 7.43250 7.71295 7.76239 7.83354 8.32790 8.49314 9.25075 9.88698 10.45342 11.33548 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.002608 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.029291 B =10732.529108 C =11355.328673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.162 3.838 4 C 0.188 3.812 5 N -0.436 5.436 6 C -0.067 4.067 7 C 0.597 3.403 8 O -0.536 6.536 9 N -0.704 5.704 10 C 0.149 3.851 11 H 0.087 0.913 12 C -0.147 4.147 13 C 0.174 3.826 14 N -0.585 5.585 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.902 3.098 20 H -0.291 1.291 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.171 3.829 24 H 0.066 0.934 25 C -0.163 4.163 26 C -0.133 4.133 27 C 0.020 3.980 28 O -0.191 6.191 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.404 0.596 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.021 0.979 39 H 0.254 0.746 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.703 8.234 14.964 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.085 3.915 4 C -0.021 4.021 5 N -0.168 5.168 6 C -0.188 4.188 7 C 0.381 3.619 8 O -0.413 6.413 9 N -0.352 5.352 10 C 0.046 3.954 11 H 0.105 0.895 12 C -0.188 4.188 13 C 0.048 3.952 14 N -0.306 5.306 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.544 5.544 19 Si 0.731 3.269 20 H -0.217 1.217 21 H -0.211 1.211 22 H -0.209 1.209 23 C 0.062 3.938 24 H 0.084 0.916 25 C -0.222 4.222 26 C -0.172 4.172 27 C -0.054 4.054 28 O -0.076 6.076 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.238 0.762 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -18.893 7.878 14.668 25.182 hybrid contribution -0.283 -0.477 -0.152 0.575 sum -19.176 7.401 14.516 25.164 Atomic orbital electron populations 1.22839 0.79281 1.03693 1.00539 1.87979 1.20831 1.25854 1.95592 1.20513 0.80803 0.86561 1.03662 1.25602 0.95354 1.02500 0.78615 1.70739 1.01039 1.15169 1.29836 1.22025 0.92176 1.11326 0.93253 1.16720 0.85839 0.77060 0.82274 1.90839 1.24241 1.50915 1.75341 1.46164 1.11643 1.72298 1.05136 1.21195 0.86837 0.98039 0.89352 0.89471 1.22517 1.01798 0.94284 1.00171 1.20657 0.90726 0.99230 0.84623 1.44141 1.78238 1.05733 1.02520 1.19119 1.16350 1.14665 0.88105 0.91717 1.25035 0.95283 1.01400 0.97819 1.70026 1.16492 1.32255 1.35669 0.86389 0.77109 0.80785 0.82574 1.21700 1.21078 1.20939 1.20433 0.90655 0.86536 0.96148 0.91611 1.22304 1.00681 0.97709 1.01492 1.22305 1.00772 0.99107 0.95046 1.25405 0.84726 0.99415 0.95871 1.84375 1.17163 1.68474 1.37627 0.93247 0.88857 0.93484 0.89907 0.88389 0.76182 0.92842 0.92586 0.89262 0.96054 0.93581 0.92568 0.94491 0.93197 0.92513 0.91754 0.74936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.37 10.69 -35.23 -0.38 -3.75 16 3 C 0.16 1.14 6.56 36.01 0.24 1.38 16 4 C 0.19 2.03 7.93 -13.08 -0.10 1.93 16 5 N -0.44 -5.69 11.06 -7.65 -0.08 -5.77 16 6 C -0.07 -0.92 6.99 -83.02 -0.58 -1.51 16 7 C 0.60 9.80 7.78 -12.52 -0.10 9.70 16 8 O -0.54 -10.24 16.55 5.27 0.09 -10.16 16 9 N -0.70 -11.21 5.07 -54.84 -0.28 -11.49 16 10 C 0.15 2.69 2.21 -67.88 -0.15 2.54 16 11 H 0.09 1.73 5.94 -51.93 -0.31 1.42 16 12 C -0.15 -3.04 5.63 -26.83 -0.15 -3.19 16 13 C 0.17 4.25 4.87 -3.94 -0.02 4.23 16 14 N -0.58 -14.44 2.71 -165.04 -0.45 -14.89 16 15 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 16 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 17 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 18 N -0.90 -26.27 11.19 55.49 0.62 -25.65 16 19 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.17 3.49 3.28 -67.60 -0.22 3.27 16 24 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 25 C -0.16 -3.15 9.04 37.16 0.34 -2.82 16 26 C -0.13 -2.29 5.03 -26.61 -0.13 -2.42 16 27 C 0.02 0.22 11.95 29.96 0.36 0.58 16 28 O -0.19 -2.04 10.73 6.50 0.07 -1.97 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.14 8.14 -51.94 -0.42 -0.28 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.40 5.78 8.33 -40.82 -0.34 5.44 16 35 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 38 H 0.02 0.55 7.52 -51.93 -0.39 0.16 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 1.00 5.76 -51.93 -0.30 0.70 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.23 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -33.33 371.02 -6.18 -39.50 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.69 Total: 3.86 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 0.35 Total: 7.95 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.19 Total: -57.79 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.22 Total: -15.87 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.33 -6.18 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947877773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.579 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds