Wall clock time and date at job start Tue Mar 31 2020 14:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00022 * 2 1 4 4 C 1.50704 * 109.47179 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.38067 * 89.99905 * 4 3 2 6 6 C 1.36063 * 108.47644 * 179.97438 * 5 4 3 7 7 C 1.47419 * 126.44999 * 179.97438 * 6 5 4 8 8 O 1.21608 * 120.00275 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99886 * 0.02824 * 7 6 5 10 10 C 1.46499 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.45141 * 324.96616 * 10 9 7 12 12 C 1.53044 * 109.46007 * 84.93549 * 10 9 7 13 13 C 1.52755 * 109.38132 * 181.25927 * 12 10 9 14 14 N 1.46923 * 109.00900 * 305.58408 * 13 12 10 15 15 C 1.36943 * 120.62930 * 233.58508 * 14 13 12 16 16 H 1.08004 * 119.99729 * 152.16663 * 15 14 13 17 17 C 1.38806 * 119.99865 * 332.16538 * 15 14 13 18 18 N 1.31614 * 120.00503 * 342.77410 * 17 15 14 19 19 Si 1.86807 * 119.99640 * 162.77186 * 17 15 14 20 20 H 1.48505 * 109.47082 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47280 * 300.00267 * 19 17 15 22 22 H 1.48498 * 109.46916 * 60.00563 * 19 17 15 23 23 C 1.46927 * 118.73893 * 53.31139 * 14 13 12 24 24 H 1.08999 * 109.58786 * 186.85311 * 23 14 13 25 25 C 1.52999 * 109.58655 * 66.57457 * 23 14 13 26 26 C 1.53046 * 109.45791 * 204.99746 * 10 9 7 27 27 C 1.36096 * 107.10552 * 0.22514 * 6 5 4 28 28 O 1.34049 * 125.37371 * 269.95306 * 4 3 2 29 29 H 1.09004 * 109.46757 * 60.00921 * 1 2 3 30 30 H 1.08995 * 109.46868 * 180.02562 * 1 2 3 31 31 H 1.08989 * 109.47177 * 300.00361 * 1 2 3 32 32 H 1.08992 * 109.47416 * 59.99598 * 3 2 1 33 33 H 1.09006 * 109.46639 * 299.99387 * 3 2 1 34 34 H 0.97006 * 119.99849 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.49256 * 301.33300 * 12 10 9 36 36 H 1.09002 * 109.49531 * 61.42998 * 12 10 9 37 37 H 1.09005 * 109.50719 * 185.70148 * 13 12 10 38 38 H 1.09006 * 109.43430 * 65.42411 * 13 12 10 39 39 H 0.97004 * 120.00231 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.47413 * 59.99715 * 25 23 14 41 41 H 1.08996 * 109.47336 * 180.02562 * 25 23 14 42 42 H 1.09006 * 109.47238 * 300.00226 * 25 23 14 43 43 H 1.09004 * 109.49497 * 58.66620 * 26 10 9 44 44 H 1.08999 * 109.49861 * 298.56732 * 26 10 9 45 45 H 1.08001 * 126.52612 * 179.76879 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2630 1.1269 -1.0584 6 6 5.5606 1.0247 -0.6622 7 6 6.7401 0.9308 -1.5416 8 8 7.8529 0.8429 -1.0592 9 7 6.5851 0.9425 -2.8805 10 6 7.7572 0.8498 -3.7544 11 1 8.5944 1.3758 -3.2957 12 6 8.1279 -0.6213 -3.9557 13 6 9.3689 -0.7147 -4.8416 14 7 9.1231 0.0220 -6.0888 15 6 9.3040 -0.5831 -7.3038 16 1 8.7336 -0.2555 -8.1605 17 6 10.2204 -1.6174 -7.4344 18 7 11.1453 -1.7973 -6.5155 19 14 10.1409 -2.7543 -8.9146 20 1 11.2220 -3.7679 -8.8188 21 1 8.8226 -3.4371 -8.9441 22 1 10.3156 -1.9611 -10.1578 23 6 8.6737 1.4185 -6.0074 24 1 8.4217 1.7800 -7.0044 25 6 9.7889 2.2826 -5.4153 26 6 7.4352 1.4863 -5.1084 27 6 5.5645 1.0199 0.6987 28 8 4.2858 1.1263 1.0940 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 5.6974 1.0123 -3.2653 35 1 8.3344 -1.0801 -2.9887 36 1 7.3003 -1.1425 -4.4369 37 1 9.5755 -1.7604 -5.0696 38 1 10.2204 -0.2771 -4.3204 39 1 11.7855 -2.5203 -6.6066 40 1 10.6718 2.2226 -6.0518 41 1 9.4534 3.3179 -5.3554 42 1 10.0359 1.9227 -4.4165 43 1 7.1486 2.5277 -4.9619 44 1 6.6141 0.9452 -5.5788 45 1 6.4313 0.9469 1.3388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947877773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:50 Heat of formation + Delta-G solvation = -60.040652 kcal Electronic energy + Delta-G solvation = -27439.536091 eV Core-core repulsion = 23458.704939 eV Total energy + Delta-G solvation = -3980.831152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.57572 -41.02082 -39.32572 -38.90579 -36.16423 -35.95731 -34.29219 -32.72932 -32.37278 -31.28181 -28.86636 -28.53217 -26.67931 -26.36142 -25.34383 -23.69912 -23.23341 -22.47067 -21.60610 -20.25090 -19.36483 -18.55799 -18.27441 -17.63938 -17.42821 -17.01298 -16.76550 -16.61686 -16.49312 -15.96261 -15.68938 -15.51932 -15.18915 -14.96024 -14.57296 -14.33143 -14.14273 -13.89493 -13.87805 -13.29011 -13.15301 -12.93430 -12.64054 -12.62525 -12.56536 -12.32281 -12.31016 -12.06947 -12.05122 -12.01588 -11.80527 -11.51035 -11.39344 -11.01459 -10.78810 -10.54661 -10.33015 -10.00986 -8.68255 -7.84897 -5.29534 -0.04161 0.70888 1.40980 1.47744 1.50449 1.56812 1.97103 2.15949 2.52695 2.56781 3.18693 3.30636 3.57974 3.65721 3.68710 3.83989 4.05610 4.11915 4.23386 4.27144 4.39937 4.43076 4.50709 4.53844 4.57548 4.63729 4.70654 4.74352 4.81682 4.84779 4.91627 4.92913 5.05987 5.10587 5.16239 5.32929 5.43939 5.44447 5.55463 5.68895 5.75745 6.02873 6.21604 6.41642 6.53285 7.06726 7.16594 7.88471 8.40740 9.21830 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.002608 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.029291 B =10732.529108 C =11355.328673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.160 3.840 4 C 0.193 3.807 5 N -0.458 5.458 6 C -0.099 4.099 7 C 0.598 3.402 8 O -0.570 6.570 9 N -0.696 5.696 10 C 0.161 3.839 11 H 0.072 0.928 12 C -0.133 4.133 13 C 0.186 3.814 14 N -0.599 5.599 15 C -0.259 4.259 16 H 0.071 0.929 17 C -0.052 4.052 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.298 1.298 21 H -0.279 1.279 22 H -0.274 1.274 23 C 0.161 3.839 24 H 0.071 0.929 25 C -0.153 4.153 26 C -0.119 4.119 27 C 0.041 3.959 28 O -0.187 6.187 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.414 0.586 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.054 0.946 38 H -0.005 1.005 39 H 0.248 0.752 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.624 9.670 15.497 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C 0.083 3.917 4 C -0.017 4.017 5 N -0.190 5.190 6 C -0.219 4.219 7 C 0.384 3.616 8 O -0.449 6.449 9 N -0.345 5.345 10 C 0.057 3.943 11 H 0.090 0.910 12 C -0.174 4.174 13 C 0.059 3.941 14 N -0.322 5.322 15 C -0.389 4.389 16 H 0.089 0.911 17 C -0.247 4.247 18 N -0.581 5.581 19 Si 0.794 3.206 20 H -0.224 1.224 21 H -0.205 1.205 22 H -0.199 1.199 23 C 0.055 3.945 24 H 0.089 0.911 25 C -0.212 4.212 26 C -0.158 4.158 27 C -0.033 4.033 28 O -0.072 6.072 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.250 0.750 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.013 0.987 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -21.873 9.348 15.186 28.221 hybrid contribution 0.549 -0.878 -0.247 1.064 sum -21.325 8.469 14.939 27.380 Atomic orbital electron populations 1.23028 0.77369 1.04355 1.02043 1.87915 1.22950 1.26881 1.95925 1.20863 0.78354 0.86454 1.06053 1.26437 0.96706 1.00545 0.77991 1.70691 1.00831 1.16492 1.30995 1.21701 0.91831 1.14527 0.93844 1.17025 0.86265 0.75932 0.82387 1.90818 1.25821 1.52431 1.75876 1.45933 1.11310 1.72294 1.04993 1.20849 0.87399 0.95742 0.90325 0.90982 1.22281 0.99789 0.96549 0.98738 1.20325 0.91625 0.96932 0.85218 1.44346 1.78367 1.07746 1.01721 1.19493 1.15654 1.14666 0.89080 0.91110 1.25796 0.95284 1.03081 1.00576 1.70194 1.17470 1.32753 1.37725 0.85368 0.76780 0.78692 0.79762 1.22430 1.20521 1.19937 1.20693 0.92071 0.84320 0.97465 0.91077 1.22183 0.99391 0.99750 0.99898 1.22143 0.99059 1.01202 0.93386 1.25886 0.85523 0.96673 0.95259 1.84426 1.16945 1.68218 1.37620 0.92128 0.88730 0.91566 0.86730 0.86727 0.74957 0.93552 0.92600 0.92776 0.98699 0.94274 0.95046 0.90655 0.94527 0.89078 0.91174 0.72419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.40 10.69 -148.98 -1.59 -7.99 16 3 C 0.16 1.79 6.56 71.24 0.47 2.26 16 4 C 0.19 3.73 7.93 88.39 0.70 4.44 16 5 N -0.46 -11.21 11.06 -293.04 -3.24 -14.45 16 6 C -0.10 -2.62 6.99 40.41 0.28 -2.34 16 7 C 0.60 19.25 7.78 86.66 0.67 19.93 16 8 O -0.57 -21.81 16.55 -4.05 -0.07 -21.87 16 9 N -0.70 -21.41 5.07 -445.66 -2.26 -23.67 16 10 C 0.16 5.73 2.21 45.02 0.10 5.83 16 11 H 0.07 2.85 5.94 -2.39 -0.01 2.83 16 12 C -0.13 -5.60 5.63 30.53 0.17 -5.43 16 13 C 0.19 9.44 4.87 86.22 0.42 9.86 16 14 N -0.60 -30.02 2.71 -676.06 -1.83 -31.85 16 15 C -0.26 -14.20 9.58 84.03 0.81 -13.39 16 16 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 17 C -0.05 -2.95 4.91 84.86 0.42 -2.53 16 18 N -0.94 -56.67 11.19 21.65 0.24 -56.42 16 19 Si 0.97 45.51 29.59 68.60 2.03 47.54 16 20 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 C 0.16 6.45 3.28 44.97 0.15 6.60 16 24 H 0.07 2.77 7.93 -2.39 -0.02 2.75 16 25 C -0.15 -5.84 9.04 71.98 0.65 -5.19 16 26 C -0.12 -3.85 5.03 30.67 0.15 -3.69 16 27 C 0.04 0.83 11.95 67.32 0.80 1.64 16 28 O -0.19 -3.54 10.73 0.34 0.00 -3.53 16 29 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.11 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.41 11.13 8.33 -92.70 -0.77 10.36 16 35 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.05 3.12 6.04 -2.38 -0.01 3.10 16 38 H -0.01 -0.28 7.52 -2.38 -0.02 -0.30 16 39 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.04 1.47 5.76 -2.38 -0.01 1.46 16 43 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.26 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -74.52 371.02 0.57 -73.95 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.24 Total: 18.90 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 7.04 Total: 19.40 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -7.09 Total: -126.39 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.66 Total: -33.40 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.52 0.57 -73.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947877773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.914 kcal (2) G-P(sol) polarization free energy of solvation -74.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds