Wall clock time and date at job start Tue Mar 31 2020 14:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99559 * 2 1 4 4 C 1.50702 * 109.47141 * 179.97438 * 3 2 1 5 5 N 1.29930 * 125.38369 * 89.97475 * 4 3 2 6 6 C 1.36060 * 108.48114 * 180.02562 * 5 4 3 7 7 C 1.47419 * 126.45149 * 179.97438 * 6 5 4 8 8 O 1.21611 * 120.00028 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99796 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99805 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46165 * 325.00082 * 10 9 7 12 12 C 1.53037 * 109.45811 * 84.97225 * 10 9 7 13 13 C 1.53197 * 109.31059 * 181.39665 * 12 10 9 14 14 N 1.46917 * 108.76422 * 305.34614 * 13 12 10 15 15 C 1.36944 * 120.62806 * 233.59579 * 14 13 12 16 16 H 1.08000 * 120.00081 * 150.87428 * 15 14 13 17 17 C 1.38813 * 119.99793 * 330.86913 * 15 14 13 18 18 N 1.31616 * 120.00059 * 343.81171 * 17 15 14 19 19 Si 1.86799 * 119.99585 * 163.81780 * 17 15 14 20 20 H 1.48500 * 109.47274 * 94.31128 * 19 17 15 21 21 H 1.48503 * 109.46704 * 214.30888 * 19 17 15 22 22 H 1.48498 * 109.47404 * 334.30765 * 19 17 15 23 23 C 1.46924 * 118.74410 * 53.61831 * 14 13 12 24 24 H 1.08996 * 109.58582 * 66.17538 * 23 14 13 25 25 C 1.52995 * 109.59215 * 186.60365 * 23 14 13 26 26 C 1.53040 * 109.45736 * 205.02824 * 10 9 7 27 27 C 1.36092 * 107.10416 * 0.02562 * 6 5 4 28 28 O 1.34056 * 125.37388 * 270.02312 * 4 3 2 29 29 H 1.09004 * 109.46518 * 60.01053 * 1 2 3 30 30 H 1.09007 * 109.46653 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47560 * 300.00524 * 1 2 3 32 32 H 1.08997 * 109.47627 * 59.99348 * 3 2 1 33 33 H 1.09003 * 109.46725 * 299.99297 * 3 2 1 34 34 H 0.97001 * 120.00092 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.50188 * 301.33873 * 12 10 9 36 36 H 1.08998 * 109.49818 * 61.43267 * 12 10 9 37 37 H 1.08999 * 109.58417 * 185.56361 * 13 12 10 38 38 H 1.08996 * 109.71208 * 65.20833 * 13 12 10 39 39 H 0.97004 * 119.99910 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.47641 * 179.28937 * 25 23 14 41 41 H 1.09003 * 109.47003 * 299.29242 * 25 23 14 42 42 H 1.09004 * 109.47406 * 59.28378 * 25 23 14 43 43 H 1.09002 * 109.49324 * 298.56401 * 26 10 9 44 44 H 1.08994 * 109.49996 * 58.66125 * 26 10 9 45 45 H 1.07998 * 126.52837 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1867 0.0006 5 7 4.2629 1.1267 -1.0584 6 6 5.5605 1.0237 -0.6622 7 6 6.7398 0.9291 -1.5416 8 8 7.8526 0.8404 -1.0591 9 7 6.5848 0.9409 -2.8804 10 6 7.7569 0.8475 -3.7544 11 1 8.5948 1.3724 -3.2955 12 6 8.1262 -0.6238 -3.9565 13 6 9.3727 -0.7163 -4.8422 14 7 9.1223 0.0195 -6.0889 15 6 9.3035 -0.5850 -7.3043 16 1 8.7157 -0.2738 -8.1552 17 6 10.2427 -1.5977 -7.4425 18 7 11.1698 -1.7655 -6.5234 19 14 10.1909 -2.7224 -8.9331 20 1 11.1029 -2.1977 -9.9810 21 1 10.6234 -4.0872 -8.5386 22 1 8.8053 -2.7764 -9.4646 23 6 8.6741 1.4164 -6.0071 24 1 9.4682 2.0306 -5.5826 25 6 8.3210 1.9246 -7.4063 26 6 7.4356 1.4850 -5.1081 27 6 5.5646 1.0232 0.6987 28 8 4.2856 1.1252 1.0940 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8465 0.8899 33 1 1.6885 1.8463 -0.8901 34 1 5.6973 1.0121 -3.2653 35 1 8.3320 -1.0835 -2.9898 36 1 7.2981 -1.1439 -4.4380 37 1 9.5821 -1.7614 -5.0704 38 1 10.2253 -0.2776 -4.3239 39 1 11.8259 -2.4734 -6.6198 40 1 7.9768 2.9569 -7.3419 41 1 9.2034 1.8750 -8.0443 42 1 7.5312 1.3041 -7.8297 43 1 6.6141 0.9448 -5.5787 44 1 7.1499 2.5265 -4.9611 45 1 6.4318 0.9547 1.3388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947877774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:55 Heat of formation + Delta-G solvation = -33.753281 kcal Electronic energy + Delta-G solvation = -27330.955768 eV Core-core repulsion = 23351.264523 eV Total energy + Delta-G solvation = -3979.691246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.70871 -39.58744 -38.41372 -37.60411 -35.14600 -34.54131 -32.37446 -31.85524 -31.17376 -29.48225 -28.17783 -26.39219 -26.17876 -25.15975 -23.96201 -22.13529 -21.72117 -20.93495 -20.06510 -19.34869 -18.24579 -17.57384 -16.81470 -16.38624 -16.29968 -16.12555 -16.05001 -15.66159 -15.02880 -14.58900 -14.26122 -13.91427 -13.72556 -13.53488 -13.35426 -13.21392 -12.92039 -12.77734 -12.66061 -12.07518 -11.58087 -11.53365 -11.18680 -11.13364 -11.08051 -10.90167 -10.86760 -10.61392 -10.36558 -10.29266 -10.16890 -10.03627 -9.98323 -9.69784 -9.39185 -9.35492 -8.67452 -8.38318 -6.60589 -5.73651 -3.16735 0.84678 1.63901 2.18411 3.06229 3.32687 3.39336 3.41688 3.47610 3.49455 3.79737 4.39647 4.52673 4.56293 4.67751 4.79552 4.82186 4.89659 5.20336 5.22335 5.30328 5.38026 5.42204 5.45724 5.62480 5.72877 5.82269 6.02903 6.19679 6.28752 6.35439 6.43449 6.45141 6.46515 6.55627 6.68074 6.82776 6.90392 7.05774 7.13710 7.16521 7.42235 7.70901 7.75632 7.86458 8.32355 8.50674 9.26131 9.90104 10.47212 11.35181 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.002550 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.175251 B =10977.398869 C =11345.934069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.162 3.838 4 C 0.188 3.812 5 N -0.436 5.436 6 C -0.067 4.067 7 C 0.597 3.403 8 O -0.536 6.536 9 N -0.703 5.703 10 C 0.150 3.850 11 H 0.083 0.917 12 C -0.147 4.147 13 C 0.175 3.825 14 N -0.588 5.588 15 C -0.250 4.250 16 H 0.070 0.930 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.899 3.101 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.172 3.828 24 H 0.027 0.973 25 C -0.135 4.135 26 C -0.134 4.134 27 C 0.020 3.980 28 O -0.191 6.191 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.404 0.596 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.021 0.979 39 H 0.253 0.747 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.128 8.166 14.442 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.085 3.915 4 C -0.021 4.021 5 N -0.168 5.168 6 C -0.188 4.188 7 C 0.381 3.619 8 O -0.413 6.413 9 N -0.352 5.352 10 C 0.047 3.953 11 H 0.102 0.898 12 C -0.187 4.187 13 C 0.049 3.951 14 N -0.311 5.311 15 C -0.380 4.380 16 H 0.088 0.912 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.729 3.271 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.064 3.936 24 H 0.045 0.955 25 C -0.193 4.193 26 C -0.174 4.174 27 C -0.054 4.054 28 O -0.076 6.076 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.238 0.762 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -19.330 7.825 14.150 25.201 hybrid contribution -0.273 -0.507 -0.137 0.592 sum -19.603 7.318 14.013 25.184 Atomic orbital electron populations 1.22842 0.79281 1.03693 1.00540 1.87980 1.20833 1.25851 1.95592 1.20515 0.80802 0.86561 1.03665 1.25604 0.95359 1.02491 0.78612 1.70734 1.01048 1.15160 1.29845 1.22021 0.92170 1.11339 0.93253 1.16724 0.85840 0.77053 0.82271 1.90841 1.24246 1.50892 1.75336 1.46155 1.11626 1.72316 1.05120 1.21134 0.86791 0.98068 0.89323 0.89848 1.22582 1.01752 0.94210 1.00176 1.20737 0.90619 0.99221 0.84521 1.44172 1.78272 1.06049 1.02605 1.19163 1.14698 1.15479 0.88636 0.91249 1.25088 0.95360 1.01508 0.97718 1.70032 1.15889 1.33245 1.35470 0.86332 0.77651 0.80497 0.82586 1.21534 1.21656 1.20475 1.20356 0.92169 0.87718 0.93346 0.95516 1.21790 1.01893 0.98098 0.97493 1.22388 1.01131 0.99028 0.94835 1.25404 0.84717 0.99415 0.95868 1.84378 1.17137 1.68497 1.37627 0.93254 0.88855 0.93474 0.89904 0.88386 0.76155 0.92842 0.92545 0.89305 0.96085 0.93695 0.94299 0.91874 0.92730 0.91683 0.92615 0.74934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.37 10.69 -35.23 -0.38 -3.75 16 3 C 0.16 1.14 6.56 36.01 0.24 1.38 16 4 C 0.19 2.03 7.93 -13.08 -0.10 1.93 16 5 N -0.44 -5.69 11.06 -7.66 -0.08 -5.78 16 6 C -0.07 -0.93 6.99 -83.02 -0.58 -1.51 16 7 C 0.60 9.81 7.78 -12.52 -0.10 9.71 16 8 O -0.54 -10.26 16.55 5.27 0.09 -10.17 16 9 N -0.70 -11.22 5.07 -54.84 -0.28 -11.50 16 10 C 0.15 2.73 2.42 -67.89 -0.16 2.57 16 11 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 12 C -0.15 -3.03 5.65 -26.61 -0.15 -3.18 16 13 C 0.18 4.30 5.29 -3.71 -0.02 4.28 16 14 N -0.59 -14.56 2.99 -164.78 -0.49 -15.05 16 15 C -0.25 -6.72 8.60 -15.06 -0.13 -6.85 16 16 H 0.07 1.81 6.21 -52.49 -0.33 1.49 16 17 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 18 N -0.90 -26.40 11.22 55.49 0.62 -25.78 16 19 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.17 3.55 3.50 -67.60 -0.24 3.31 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 C -0.14 -2.52 7.95 37.16 0.30 -2.22 16 26 C -0.13 -2.33 4.84 -26.61 -0.13 -2.46 16 27 C 0.02 0.22 11.95 29.96 0.36 0.58 16 28 O -0.19 -2.04 10.73 6.49 0.07 -1.97 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.40 5.79 8.33 -40.82 -0.34 5.45 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 2.43 6.11 -51.93 -0.32 2.11 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 42 H 0.05 1.02 7.40 -51.93 -0.38 0.64 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.23 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -33.43 371.96 -6.36 -39.79 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.79 Total: 3.10 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 0.31 Total: 8.77 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.23 Total: -58.10 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.22 Total: -15.89 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.43 -6.36 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947877774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.035 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds