Wall clock time and date at job start Tue Mar 31 2020 14:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99559 * 2 1 4 4 C 1.50702 * 109.47141 * 179.97438 * 3 2 1 5 5 N 1.29930 * 125.38369 * 89.97475 * 4 3 2 6 6 C 1.36060 * 108.48114 * 180.02562 * 5 4 3 7 7 C 1.47419 * 126.45149 * 179.97438 * 6 5 4 8 8 O 1.21611 * 120.00028 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99796 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99805 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46165 * 325.00082 * 10 9 7 12 12 C 1.53037 * 109.45811 * 84.97225 * 10 9 7 13 13 C 1.53197 * 109.31059 * 181.39665 * 12 10 9 14 14 N 1.46917 * 108.76422 * 305.34614 * 13 12 10 15 15 C 1.36944 * 120.62806 * 233.59579 * 14 13 12 16 16 H 1.08000 * 120.00081 * 150.87428 * 15 14 13 17 17 C 1.38813 * 119.99793 * 330.86913 * 15 14 13 18 18 N 1.31616 * 120.00059 * 343.81171 * 17 15 14 19 19 Si 1.86799 * 119.99585 * 163.81780 * 17 15 14 20 20 H 1.48500 * 109.47274 * 94.31128 * 19 17 15 21 21 H 1.48503 * 109.46704 * 214.30888 * 19 17 15 22 22 H 1.48498 * 109.47404 * 334.30765 * 19 17 15 23 23 C 1.46924 * 118.74410 * 53.61831 * 14 13 12 24 24 H 1.08996 * 109.58582 * 66.17538 * 23 14 13 25 25 C 1.52995 * 109.59215 * 186.60365 * 23 14 13 26 26 C 1.53040 * 109.45736 * 205.02824 * 10 9 7 27 27 C 1.36092 * 107.10416 * 0.02562 * 6 5 4 28 28 O 1.34056 * 125.37388 * 270.02312 * 4 3 2 29 29 H 1.09004 * 109.46518 * 60.01053 * 1 2 3 30 30 H 1.09007 * 109.46653 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47560 * 300.00524 * 1 2 3 32 32 H 1.08997 * 109.47627 * 59.99348 * 3 2 1 33 33 H 1.09003 * 109.46725 * 299.99297 * 3 2 1 34 34 H 0.97001 * 120.00092 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.50188 * 301.33873 * 12 10 9 36 36 H 1.08998 * 109.49818 * 61.43267 * 12 10 9 37 37 H 1.08999 * 109.58417 * 185.56361 * 13 12 10 38 38 H 1.08996 * 109.71208 * 65.20833 * 13 12 10 39 39 H 0.97004 * 119.99910 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.47641 * 179.28937 * 25 23 14 41 41 H 1.09003 * 109.47003 * 299.29242 * 25 23 14 42 42 H 1.09004 * 109.47406 * 59.28378 * 25 23 14 43 43 H 1.09002 * 109.49324 * 298.56401 * 26 10 9 44 44 H 1.08994 * 109.49996 * 58.66125 * 26 10 9 45 45 H 1.07998 * 126.52837 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1867 0.0006 5 7 4.2629 1.1267 -1.0584 6 6 5.5605 1.0237 -0.6622 7 6 6.7398 0.9291 -1.5416 8 8 7.8526 0.8404 -1.0591 9 7 6.5848 0.9409 -2.8804 10 6 7.7569 0.8475 -3.7544 11 1 8.5948 1.3724 -3.2955 12 6 8.1262 -0.6238 -3.9565 13 6 9.3727 -0.7163 -4.8422 14 7 9.1223 0.0195 -6.0889 15 6 9.3035 -0.5850 -7.3043 16 1 8.7157 -0.2738 -8.1552 17 6 10.2427 -1.5977 -7.4425 18 7 11.1698 -1.7655 -6.5234 19 14 10.1909 -2.7224 -8.9331 20 1 11.1029 -2.1977 -9.9810 21 1 10.6234 -4.0872 -8.5386 22 1 8.8053 -2.7764 -9.4646 23 6 8.6741 1.4164 -6.0071 24 1 9.4682 2.0306 -5.5826 25 6 8.3210 1.9246 -7.4063 26 6 7.4356 1.4850 -5.1081 27 6 5.5646 1.0232 0.6987 28 8 4.2856 1.1252 1.0940 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8465 0.8899 33 1 1.6885 1.8463 -0.8901 34 1 5.6973 1.0121 -3.2653 35 1 8.3320 -1.0835 -2.9898 36 1 7.2981 -1.1439 -4.4380 37 1 9.5821 -1.7614 -5.0704 38 1 10.2253 -0.2776 -4.3239 39 1 11.8259 -2.4734 -6.6198 40 1 7.9768 2.9569 -7.3419 41 1 9.2034 1.8750 -8.0443 42 1 7.5312 1.3041 -7.8297 43 1 6.6141 0.9448 -5.5787 44 1 7.1499 2.5265 -4.9611 45 1 6.4318 0.9547 1.3388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947877774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:54 Heat of formation + Delta-G solvation = -60.137528 kcal Electronic energy + Delta-G solvation = -27332.099875 eV Core-core repulsion = 23351.264523 eV Total energy + Delta-G solvation = -3980.835352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.57982 -40.97937 -39.26083 -38.90544 -36.21663 -36.00035 -34.21399 -33.04307 -32.49297 -31.23977 -28.81414 -28.02278 -26.88589 -26.61702 -25.32658 -23.69959 -22.84569 -22.20584 -21.50436 -20.97484 -19.38811 -18.31395 -18.23840 -17.64404 -17.32422 -17.01586 -16.90722 -16.65149 -16.52174 -15.97736 -15.73586 -15.57308 -15.25271 -14.88449 -14.76025 -14.51519 -14.32639 -13.88014 -13.34417 -13.29029 -12.96804 -12.73647 -12.71568 -12.63451 -12.61328 -12.36752 -12.30389 -12.10476 -12.04918 -11.87112 -11.73302 -11.52638 -11.51269 -11.08511 -10.78833 -10.55061 -10.33971 -10.02960 -8.64647 -7.83362 -5.28938 -0.04622 0.70422 1.40521 1.47263 1.49280 1.58624 1.95650 2.14858 2.53442 2.56281 3.18409 3.32909 3.56134 3.64849 3.68317 3.85197 4.03645 4.11745 4.22981 4.25375 4.37199 4.39721 4.53868 4.57243 4.60011 4.63657 4.69449 4.74267 4.77759 4.87881 4.92885 4.94784 5.04814 5.07330 5.14656 5.37899 5.42631 5.52123 5.55575 5.70750 5.74040 6.02824 6.20913 6.43704 6.52446 7.05656 7.17652 7.89451 8.42503 9.24383 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.002550 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.175251 B =10977.398869 C =11345.934069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.159 3.841 4 C 0.193 3.807 5 N -0.458 5.458 6 C -0.100 4.100 7 C 0.598 3.402 8 O -0.570 6.570 9 N -0.695 5.695 10 C 0.161 3.839 11 H 0.065 0.935 12 C -0.131 4.131 13 C 0.185 3.815 14 N -0.603 5.603 15 C -0.248 4.248 16 H 0.080 0.920 17 C -0.057 4.057 18 N -0.940 5.940 19 Si 0.963 3.037 20 H -0.287 1.287 21 H -0.298 1.298 22 H -0.267 1.267 23 C 0.160 3.840 24 H 0.015 0.985 25 C -0.127 4.127 26 C -0.118 4.118 27 C 0.041 3.959 28 O -0.187 6.187 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.414 0.586 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.055 0.945 38 H -0.008 1.008 39 H 0.247 0.753 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.326 9.557 14.769 29.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C 0.083 3.917 4 C -0.017 4.017 5 N -0.190 5.190 6 C -0.219 4.219 7 C 0.384 3.616 8 O -0.450 6.450 9 N -0.344 5.344 10 C 0.057 3.943 11 H 0.083 0.917 12 C -0.171 4.171 13 C 0.058 3.942 14 N -0.327 5.327 15 C -0.379 4.379 16 H 0.097 0.903 17 C -0.252 4.252 18 N -0.587 5.587 19 Si 0.792 3.208 20 H -0.214 1.214 21 H -0.225 1.225 22 H -0.191 1.191 23 C 0.054 3.946 24 H 0.033 0.967 25 C -0.184 4.184 26 C -0.158 4.158 27 C -0.033 4.033 28 O -0.072 6.072 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.251 0.749 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.010 0.990 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -22.592 9.249 14.458 28.372 hybrid contribution 0.655 -0.881 -0.150 1.108 sum -21.936 8.368 14.308 27.494 Atomic orbital electron populations 1.23032 0.77366 1.04358 1.02045 1.87917 1.22955 1.26873 1.95926 1.20865 0.78340 0.86458 1.06063 1.26443 0.96714 1.00519 0.77981 1.70685 1.00820 1.16486 1.31003 1.21687 0.91817 1.14567 0.93837 1.17035 0.86273 0.75912 0.82388 1.90821 1.25861 1.52431 1.75880 1.45910 1.11257 1.72314 1.04961 1.20792 0.87310 0.95866 0.90350 0.91684 1.22326 0.99689 0.96364 0.98740 1.20433 0.91521 0.97024 0.85233 1.44428 1.78356 1.07986 1.01921 1.19545 1.13815 1.15000 0.89501 0.90260 1.25865 0.95471 1.03361 1.00501 1.70202 1.16961 1.33913 1.37615 0.85317 0.78022 0.78040 0.79430 1.21353 1.22481 1.19118 1.20633 0.93130 0.85218 0.95613 0.96723 1.21708 1.00950 1.00372 0.95363 1.22198 0.99373 1.01077 0.93121 1.25883 0.85522 0.96653 0.95249 1.84429 1.16910 1.68239 1.37622 0.92130 0.88725 0.91561 0.86724 0.86714 0.74888 0.93517 0.92365 0.92660 0.99012 0.94412 0.90402 0.93972 0.92723 0.90919 0.89275 0.72422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.38 10.69 -148.98 -1.59 -7.97 16 3 C 0.16 1.78 6.56 71.24 0.47 2.25 16 4 C 0.19 3.74 7.93 88.39 0.70 4.44 16 5 N -0.46 -11.20 11.06 -293.04 -3.24 -14.44 16 6 C -0.10 -2.63 6.99 40.41 0.28 -2.35 16 7 C 0.60 19.36 7.78 86.66 0.67 20.03 16 8 O -0.57 -22.00 16.55 -4.07 -0.07 -22.07 16 9 N -0.70 -21.49 5.07 -445.66 -2.26 -23.75 16 10 C 0.16 5.81 2.42 45.02 0.11 5.91 16 11 H 0.06 2.63 7.58 -2.39 -0.02 2.61 16 12 C -0.13 -5.51 5.65 30.67 0.17 -5.33 16 13 C 0.18 9.47 5.29 86.37 0.46 9.92 16 14 N -0.60 -30.34 2.99 -675.25 -2.02 -32.36 16 15 C -0.25 -13.45 8.60 84.03 0.72 -12.72 16 16 H 0.08 4.07 6.21 -2.91 -0.02 4.06 16 17 C -0.06 -3.25 4.93 84.86 0.42 -2.83 16 18 N -0.94 -57.27 11.22 21.65 0.24 -57.03 16 19 Si 0.96 45.47 29.58 68.60 2.03 47.50 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.16 6.50 3.50 44.98 0.16 6.66 16 24 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 25 C -0.13 -4.45 7.95 71.98 0.57 -3.88 16 26 C -0.12 -3.87 4.84 30.67 0.15 -3.72 16 27 C 0.04 0.84 11.95 67.32 0.80 1.64 16 28 O -0.19 -3.54 10.73 0.30 0.00 -3.54 16 29 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.41 11.16 8.33 -92.71 -0.77 10.39 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.05 3.19 6.11 -2.39 -0.01 3.17 16 38 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.04 1.64 7.66 -2.39 -0.02 1.62 16 42 H 0.05 1.91 7.40 -2.38 -0.02 1.89 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.26 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -75.02 371.96 0.27 -74.75 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.23 Total: 17.44 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 6.93 Total: 21.46 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -7.28 Total: -127.58 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -1.66 Total: -33.57 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -75.02 0.27 -74.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947877774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.617 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds