Wall clock time and date at job start Tue Mar 31 2020 14:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99844 * 2 1 4 4 C 1.50701 * 109.47083 * 179.97438 * 3 2 1 5 5 N 1.29932 * 125.38081 * 89.71646 * 4 3 2 6 6 C 1.36073 * 108.47799 * 179.84804 * 5 4 3 7 7 C 1.47416 * 126.45043 * 180.16718 * 6 5 4 8 8 O 1.21612 * 120.00272 * 180.29171 * 7 6 5 9 9 N 1.34780 * 120.00199 * 0.28949 * 7 6 5 10 10 C 1.46494 * 120.00391 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46052 * 35.02741 * 10 9 7 12 12 C 1.53032 * 109.46323 * 275.06969 * 10 9 7 13 13 C 1.53195 * 109.31337 * 301.34415 * 12 10 9 14 14 N 1.46930 * 108.77271 * 305.36464 * 13 12 10 15 15 C 1.36936 * 120.62880 * 233.63065 * 14 13 12 16 16 H 1.07998 * 119.99964 * 150.14936 * 15 14 13 17 17 C 1.38814 * 119.99946 * 330.14116 * 15 14 13 18 18 N 1.31617 * 120.00077 * 344.50117 * 17 15 14 19 19 Si 1.86800 * 119.99849 * 164.50433 * 17 15 14 20 20 H 1.48498 * 109.47111 * 90.00226 * 19 17 15 21 21 H 1.48499 * 109.47076 * 209.99975 * 19 17 15 22 22 H 1.48502 * 109.47175 * 329.99744 * 19 17 15 23 23 C 1.46929 * 118.74171 * 53.60738 * 14 13 12 24 24 H 1.09001 * 109.58211 * 66.17629 * 23 14 13 25 25 C 1.52990 * 109.58711 * 186.60708 * 23 14 13 26 26 C 1.53042 * 109.46114 * 155.00002 * 10 9 7 27 27 C 1.36090 * 107.09956 * 0.40636 * 6 5 4 28 28 O 1.34055 * 125.37763 * 270.02063 * 4 3 2 29 29 H 1.09001 * 109.47724 * 300.00430 * 1 2 3 30 30 H 1.09006 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46972 * 60.00653 * 1 2 3 32 32 H 1.09000 * 109.46685 * 299.98990 * 3 2 1 33 33 H 1.08993 * 109.47814 * 59.99117 * 3 2 1 34 34 H 0.97007 * 119.99412 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.49890 * 61.28855 * 12 10 9 36 36 H 1.09001 * 109.50119 * 181.39094 * 12 10 9 37 37 H 1.08996 * 109.59182 * 185.58033 * 13 12 10 38 38 H 1.09004 * 109.70621 * 65.21613 * 13 12 10 39 39 H 0.97006 * 120.00177 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47187 * 179.29298 * 25 23 14 41 41 H 1.09002 * 109.47028 * 299.28475 * 25 23 14 42 42 H 1.08996 * 109.47592 * 59.28436 * 25 23 14 43 43 H 1.09001 * 109.49919 * 178.61401 * 26 10 9 44 44 H 1.09002 * 109.49672 * 298.67269 * 26 10 9 45 45 H 1.07995 * 126.52480 * 179.79050 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2624 1.1217 -1.0584 6 6 5.5606 1.0243 -0.6622 7 6 6.7400 0.9311 -1.5417 8 8 7.8529 0.8428 -1.0592 9 7 6.5851 0.9437 -2.8805 10 6 7.7571 0.8505 -3.7544 11 1 8.5013 0.1993 -3.2957 12 6 8.3550 2.2447 -3.9561 13 6 7.2959 3.1663 -4.5690 14 7 6.7835 2.5458 -5.7984 15 6 6.7866 3.2353 -6.9815 16 1 6.8834 2.7033 -7.9163 17 6 6.6653 4.6182 -6.9793 18 7 6.2465 5.2403 -5.8977 19 14 7.0964 5.5960 -8.5114 20 1 5.8883 5.7399 -9.3630 21 1 7.5878 6.9410 -8.1182 22 1 8.1557 4.8846 -9.2710 23 6 6.2683 1.1713 -5.7344 24 1 5.3670 1.1472 -5.1218 25 6 5.9459 0.6782 -7.1463 26 6 7.3389 0.2722 -5.1083 27 6 5.5647 1.0238 0.6987 28 8 4.2857 1.1250 1.0940 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8901 32 1 1.6886 1.8462 -0.8901 33 1 1.6885 1.8465 0.8898 34 1 5.6974 1.0137 -3.2653 35 1 8.6739 2.6464 -2.9943 36 1 9.2123 2.1795 -4.6260 37 1 7.7441 4.1311 -4.8062 38 1 6.4778 3.3071 -3.8625 39 1 6.1613 6.2066 -5.8962 40 1 5.5757 -0.3459 -7.0977 41 1 5.1840 1.3192 -7.5899 42 1 6.8480 0.7099 -7.7571 43 1 8.2058 0.2255 -5.7674 44 1 6.9353 -0.7304 -4.9666 45 1 6.4318 0.9555 1.3388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947877775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:58 Heat of formation + Delta-G solvation = -31.329131 kcal Electronic energy + Delta-G solvation = -28086.057200 eV Core-core repulsion = 24106.471073 eV Total energy + Delta-G solvation = -3979.586127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.54036 -39.63362 -38.26318 -37.59067 -34.97417 -34.24777 -32.29633 -31.72026 -31.04345 -29.58556 -28.02984 -26.38710 -26.03198 -25.07276 -24.14788 -22.06864 -21.68844 -20.72980 -20.47003 -18.59165 -18.28234 -17.41222 -16.67799 -16.36956 -16.22426 -16.00971 -15.87140 -15.32694 -15.00695 -14.60206 -14.20997 -13.94348 -13.67533 -13.57681 -13.21332 -13.06979 -12.79896 -12.75705 -12.41573 -11.93330 -11.80634 -11.39818 -11.36342 -11.16041 -10.98054 -10.91518 -10.64852 -10.60700 -10.38484 -10.21136 -10.12623 -10.04484 -9.90023 -9.64309 -9.26492 -9.22357 -8.57004 -8.42606 -6.58483 -5.74510 -3.18596 1.00102 1.81622 2.34036 3.24522 3.38597 3.41531 3.46096 3.47872 3.59414 3.97184 4.51346 4.55498 4.74986 4.83093 4.96099 4.96680 5.05963 5.32168 5.35558 5.38682 5.39576 5.43316 5.53018 5.65174 5.70991 5.89723 6.02910 6.16621 6.27850 6.35290 6.40999 6.48796 6.58063 6.60648 6.65102 6.79223 6.97902 7.05282 7.10386 7.34194 7.41804 7.72189 7.85252 7.89209 8.45025 8.49829 9.25349 9.89137 10.46627 11.33728 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.003422 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.499322 B = 8180.902743 C = 8920.510789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.161 3.839 4 C 0.190 3.810 5 N -0.431 5.431 6 C -0.064 4.064 7 C 0.599 3.401 8 O -0.547 6.547 9 N -0.691 5.691 10 C 0.153 3.847 11 H 0.074 0.926 12 C -0.154 4.154 13 C 0.176 3.824 14 N -0.586 5.586 15 C -0.250 4.250 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.899 3.101 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.167 3.833 24 H 0.022 0.978 25 C -0.136 4.136 26 C -0.139 4.139 27 C 0.016 3.984 28 O -0.192 6.192 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.411 0.589 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.038 0.962 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 -9.702 12.818 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.084 3.916 4 C -0.020 4.020 5 N -0.163 5.163 6 C -0.185 4.185 7 C 0.384 3.616 8 O -0.425 6.425 9 N -0.342 5.342 10 C 0.049 3.951 11 H 0.093 0.907 12 C -0.194 4.194 13 C 0.050 3.950 14 N -0.310 5.310 15 C -0.380 4.380 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.729 3.271 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.060 3.940 24 H 0.039 0.961 25 C -0.193 4.193 26 C -0.178 4.178 27 C -0.058 4.058 28 O -0.078 6.078 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.248 0.752 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.503 -9.738 12.527 17.552 hybrid contribution -0.102 0.918 -0.184 0.942 sum -7.605 -8.821 12.343 16.970 Atomic orbital electron populations 1.22830 0.79385 1.03522 1.00617 1.87950 1.20760 1.26016 1.95620 1.20531 0.80800 0.86413 1.03843 1.25597 0.95339 1.02484 0.78536 1.70789 1.01016 1.14705 1.29755 1.21971 0.92220 1.11171 0.93154 1.16690 0.85804 0.76852 0.82269 1.90787 1.24314 1.51916 1.75532 1.45989 1.11873 1.71460 1.04832 1.20973 0.86589 0.98016 0.89525 0.90748 1.22564 1.00578 0.95887 1.00339 1.20693 0.92551 0.95237 0.86506 1.44124 1.70251 1.10065 1.06557 1.19149 1.44031 0.88974 0.85827 0.91338 1.25090 0.99789 0.97729 0.96922 1.70031 1.48512 1.08062 1.28006 0.86355 0.78250 0.79587 0.82904 1.21492 1.21696 1.20526 1.20395 0.92651 0.86394 0.94562 0.96052 1.21790 1.01765 0.98470 0.97323 1.22367 1.01613 0.98431 0.95425 1.25329 0.84733 0.99912 0.95799 1.84363 1.17097 1.68608 1.37704 0.93546 0.88982 0.93168 0.88160 0.89914 0.75223 0.92765 0.91625 0.89780 0.96341 0.93788 0.94313 0.91974 0.92682 0.90529 0.92535 0.75076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.96 10.69 -35.23 -0.38 -4.34 16 3 C 0.16 1.50 6.56 36.01 0.24 1.74 16 4 C 0.19 2.46 7.93 -13.08 -0.10 2.36 16 5 N -0.43 -6.76 11.06 -7.65 -0.08 -6.84 16 6 C -0.06 -1.01 6.99 -83.02 -0.58 -1.59 16 7 C 0.60 10.68 7.78 -12.52 -0.10 10.58 16 8 O -0.55 -10.61 16.55 5.27 0.09 -10.53 16 9 N -0.69 -12.39 4.27 -54.85 -0.23 -12.63 16 10 C 0.15 2.76 2.78 -67.90 -0.19 2.58 16 11 H 0.07 1.32 7.58 -51.93 -0.39 0.92 16 12 C -0.15 -3.11 5.77 -26.61 -0.15 -3.27 16 13 C 0.18 4.23 5.02 -3.71 -0.02 4.22 16 14 N -0.59 -14.25 2.99 -164.77 -0.49 -14.74 16 15 C -0.25 -6.65 8.58 -15.06 -0.13 -6.78 16 16 H 0.07 1.77 6.23 -52.49 -0.33 1.45 16 17 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 18 N -0.90 -26.09 11.23 55.49 0.62 -25.46 16 19 Si 0.90 21.58 29.58 -169.99 -5.03 16.56 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.17 3.37 3.20 -67.60 -0.22 3.16 16 24 H 0.02 0.46 6.64 -51.93 -0.34 0.11 16 25 C -0.14 -2.52 7.95 37.15 0.30 -2.22 16 26 C -0.14 -2.40 5.07 -26.61 -0.13 -2.53 16 27 C 0.02 0.20 11.95 29.96 0.36 0.56 16 28 O -0.19 -2.37 10.73 6.51 0.07 -2.30 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.41 7.51 6.60 -40.82 -0.27 7.24 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 2.29 6.15 -51.93 -0.32 1.97 16 38 H 0.02 0.48 7.75 -51.93 -0.40 0.07 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 42 H 0.05 1.03 7.40 -51.93 -0.38 0.64 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.23 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -32.80 367.72 -6.22 -39.02 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.62 Total: 5.61 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 0.29 Total: 10.11 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.19 Total: -59.67 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.22 Total: -17.16 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.80 -6.22 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947877775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.695 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds