Wall clock time and date at job start Tue Mar 31 2020 14:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99844 * 2 1 4 4 C 1.50701 * 109.47083 * 179.97438 * 3 2 1 5 5 N 1.29932 * 125.38081 * 89.71646 * 4 3 2 6 6 C 1.36073 * 108.47799 * 179.84804 * 5 4 3 7 7 C 1.47416 * 126.45043 * 180.16718 * 6 5 4 8 8 O 1.21612 * 120.00272 * 180.29171 * 7 6 5 9 9 N 1.34780 * 120.00199 * 0.28949 * 7 6 5 10 10 C 1.46494 * 120.00391 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46052 * 35.02741 * 10 9 7 12 12 C 1.53032 * 109.46323 * 275.06969 * 10 9 7 13 13 C 1.53195 * 109.31337 * 301.34415 * 12 10 9 14 14 N 1.46930 * 108.77271 * 305.36464 * 13 12 10 15 15 C 1.36936 * 120.62880 * 233.63065 * 14 13 12 16 16 H 1.07998 * 119.99964 * 150.14936 * 15 14 13 17 17 C 1.38814 * 119.99946 * 330.14116 * 15 14 13 18 18 N 1.31617 * 120.00077 * 344.50117 * 17 15 14 19 19 Si 1.86800 * 119.99849 * 164.50433 * 17 15 14 20 20 H 1.48498 * 109.47111 * 90.00226 * 19 17 15 21 21 H 1.48499 * 109.47076 * 209.99975 * 19 17 15 22 22 H 1.48502 * 109.47175 * 329.99744 * 19 17 15 23 23 C 1.46929 * 118.74171 * 53.60738 * 14 13 12 24 24 H 1.09001 * 109.58211 * 66.17629 * 23 14 13 25 25 C 1.52990 * 109.58711 * 186.60708 * 23 14 13 26 26 C 1.53042 * 109.46114 * 155.00002 * 10 9 7 27 27 C 1.36090 * 107.09956 * 0.40636 * 6 5 4 28 28 O 1.34055 * 125.37763 * 270.02063 * 4 3 2 29 29 H 1.09001 * 109.47724 * 300.00430 * 1 2 3 30 30 H 1.09006 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46972 * 60.00653 * 1 2 3 32 32 H 1.09000 * 109.46685 * 299.98990 * 3 2 1 33 33 H 1.08993 * 109.47814 * 59.99117 * 3 2 1 34 34 H 0.97007 * 119.99412 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.49890 * 61.28855 * 12 10 9 36 36 H 1.09001 * 109.50119 * 181.39094 * 12 10 9 37 37 H 1.08996 * 109.59182 * 185.58033 * 13 12 10 38 38 H 1.09004 * 109.70621 * 65.21613 * 13 12 10 39 39 H 0.97006 * 120.00177 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47187 * 179.29298 * 25 23 14 41 41 H 1.09002 * 109.47028 * 299.28475 * 25 23 14 42 42 H 1.08996 * 109.47592 * 59.28436 * 25 23 14 43 43 H 1.09001 * 109.49919 * 178.61401 * 26 10 9 44 44 H 1.09002 * 109.49672 * 298.67269 * 26 10 9 45 45 H 1.07995 * 126.52480 * 179.79050 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2624 1.1217 -1.0584 6 6 5.5606 1.0243 -0.6622 7 6 6.7400 0.9311 -1.5417 8 8 7.8529 0.8428 -1.0592 9 7 6.5851 0.9437 -2.8805 10 6 7.7571 0.8505 -3.7544 11 1 8.5013 0.1993 -3.2957 12 6 8.3550 2.2447 -3.9561 13 6 7.2959 3.1663 -4.5690 14 7 6.7835 2.5458 -5.7984 15 6 6.7866 3.2353 -6.9815 16 1 6.8834 2.7033 -7.9163 17 6 6.6653 4.6182 -6.9793 18 7 6.2465 5.2403 -5.8977 19 14 7.0964 5.5960 -8.5114 20 1 5.8883 5.7399 -9.3630 21 1 7.5878 6.9410 -8.1182 22 1 8.1557 4.8846 -9.2710 23 6 6.2683 1.1713 -5.7344 24 1 5.3670 1.1472 -5.1218 25 6 5.9459 0.6782 -7.1463 26 6 7.3389 0.2722 -5.1083 27 6 5.5647 1.0238 0.6987 28 8 4.2857 1.1250 1.0940 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8901 32 1 1.6886 1.8462 -0.8901 33 1 1.6885 1.8465 0.8898 34 1 5.6974 1.0137 -3.2653 35 1 8.6739 2.6464 -2.9943 36 1 9.2123 2.1795 -4.6260 37 1 7.7441 4.1311 -4.8062 38 1 6.4778 3.3071 -3.8625 39 1 6.1613 6.2066 -5.8962 40 1 5.5757 -0.3459 -7.0977 41 1 5.1840 1.3192 -7.5899 42 1 6.8480 0.7099 -7.7571 43 1 8.2058 0.2255 -5.7674 44 1 6.9353 -0.7304 -4.9666 45 1 6.4318 0.9555 1.3388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947877775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:57 Heat of formation + Delta-G solvation = -56.542197 kcal Electronic energy + Delta-G solvation = -28087.150520 eV Core-core repulsion = 24106.471073 eV Total energy + Delta-G solvation = -3980.679447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.56711 -41.09311 -39.20661 -38.91112 -36.08682 -35.89274 -34.08652 -32.95482 -32.44505 -31.32065 -28.81671 -28.02507 -26.88968 -26.64955 -25.43625 -23.76509 -22.82961 -22.23516 -21.82059 -20.23727 -19.45845 -18.28673 -18.24280 -17.71282 -17.12121 -17.01282 -16.83327 -16.68083 -16.45973 -16.11555 -15.69917 -15.58864 -15.34185 -14.83015 -14.69185 -14.42206 -14.12590 -13.88563 -13.37103 -13.31038 -13.19692 -12.83846 -12.68884 -12.63137 -12.46986 -12.34682 -12.30756 -12.18363 -11.99992 -11.97652 -11.72010 -11.42763 -11.32116 -10.99718 -10.80566 -10.50514 -10.32960 -10.00945 -8.58557 -7.81619 -5.27800 -0.02882 0.72480 1.40223 1.47026 1.49219 1.57806 2.05688 2.17114 2.53697 2.57855 3.18735 3.33844 3.58920 3.64993 3.69152 3.93607 4.06786 4.09718 4.18233 4.22070 4.40618 4.42441 4.53945 4.57560 4.59709 4.62970 4.66425 4.77961 4.84233 4.91071 4.91484 4.96801 5.02852 5.09579 5.15840 5.40162 5.50481 5.52376 5.55891 5.74151 5.75834 6.00118 6.24186 6.45163 6.53347 7.05669 7.19885 7.91882 8.44676 9.24899 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.003422 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.499322 B = 8180.902743 C = 8920.510789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.160 3.840 4 C 0.192 3.808 5 N -0.465 5.465 6 C -0.104 4.104 7 C 0.599 3.401 8 O -0.568 6.568 9 N -0.694 5.694 10 C 0.157 3.843 11 H 0.087 0.913 12 C -0.141 4.141 13 C 0.190 3.810 14 N -0.601 5.601 15 C -0.249 4.249 16 H 0.077 0.923 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.961 3.039 20 H -0.286 1.286 21 H -0.299 1.299 22 H -0.269 1.269 23 C 0.159 3.841 24 H 0.014 0.986 25 C -0.129 4.129 26 C -0.125 4.125 27 C 0.043 3.957 28 O -0.186 6.186 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.408 0.592 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.046 0.954 38 H -0.009 1.009 39 H 0.245 0.755 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 -11.390 13.237 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.083 3.917 4 C -0.018 4.018 5 N -0.197 5.197 6 C -0.224 4.224 7 C 0.385 3.615 8 O -0.448 6.448 9 N -0.343 5.343 10 C 0.053 3.947 11 H 0.105 0.895 12 C -0.181 4.181 13 C 0.064 3.936 14 N -0.325 5.325 15 C -0.379 4.379 16 H 0.094 0.906 17 C -0.248 4.248 18 N -0.584 5.584 19 Si 0.790 3.210 20 H -0.213 1.213 21 H -0.225 1.225 22 H -0.194 1.194 23 C 0.054 3.946 24 H 0.032 0.968 25 C -0.186 4.186 26 C -0.164 4.164 27 C -0.031 4.031 28 O -0.071 6.071 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.244 0.756 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.009 0.991 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -7.956 -11.466 12.929 19.024 hybrid contribution -0.054 1.395 -0.244 1.417 sum -8.011 -10.071 12.685 18.069 Atomic orbital electron populations 1.23045 0.77398 1.04513 1.01910 1.87896 1.22920 1.26495 1.95898 1.20799 0.78563 0.86587 1.05725 1.26358 0.96640 1.00737 0.78023 1.70737 1.01380 1.16298 1.31299 1.21830 0.91862 1.14522 0.94148 1.16952 0.86284 0.75970 0.82282 1.90758 1.25242 1.53005 1.75810 1.45985 1.11533 1.71685 1.05118 1.20921 0.86983 0.96451 0.90362 0.89546 1.22379 0.99442 0.96635 0.99642 1.20353 0.92357 0.94647 0.86268 1.44357 1.70758 1.11533 1.05824 1.19511 1.42184 0.89297 0.86920 0.90557 1.25816 1.00630 0.98885 0.99489 1.70198 1.50558 1.07646 1.30024 0.85373 0.78056 0.77773 0.79836 1.21262 1.22548 1.19408 1.20629 0.93252 0.84737 0.96022 0.96842 1.21721 1.01122 1.00059 0.95711 1.22242 1.00798 0.98953 0.94454 1.25915 0.85512 0.96673 0.95026 1.84410 1.16968 1.68286 1.37428 0.91537 0.88225 0.92574 0.87635 0.86617 0.75553 0.93307 0.91191 0.93511 0.99068 0.94570 0.90649 0.94117 0.92788 0.89880 0.89502 0.71880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.89 10.69 -148.98 -1.59 -9.48 16 3 C 0.16 2.73 6.56 71.24 0.47 3.19 16 4 C 0.19 4.80 7.93 88.39 0.70 5.50 16 5 N -0.47 -14.56 11.06 -293.03 -3.24 -17.80 16 6 C -0.10 -3.24 6.99 40.40 0.28 -2.96 16 7 C 0.60 21.26 7.78 86.66 0.67 21.94 16 8 O -0.57 -21.76 16.55 -4.07 -0.07 -21.82 16 9 N -0.69 -24.79 4.27 -445.69 -1.90 -26.69 16 10 C 0.16 5.51 2.78 45.02 0.13 5.64 16 11 H 0.09 2.90 7.58 -2.38 -0.02 2.88 16 12 C -0.14 -5.75 5.77 30.67 0.18 -5.57 16 13 C 0.19 9.45 5.02 86.36 0.43 9.88 16 14 N -0.60 -29.47 2.99 -675.23 -2.02 -31.49 16 15 C -0.25 -13.31 8.58 84.03 0.72 -12.58 16 16 H 0.08 3.90 6.23 -2.91 -0.02 3.89 16 17 C -0.05 -2.98 4.94 84.86 0.42 -2.56 16 18 N -0.94 -56.23 11.23 21.65 0.24 -55.99 16 19 Si 0.96 45.07 29.58 68.60 2.03 47.10 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C 0.16 6.29 3.20 44.97 0.14 6.43 16 24 H 0.01 0.58 6.64 -2.39 -0.02 0.56 16 25 C -0.13 -4.52 7.95 71.98 0.57 -3.95 16 26 C -0.13 -4.06 5.07 30.67 0.16 -3.90 16 27 C 0.04 1.01 11.95 67.32 0.80 1.82 16 28 O -0.19 -4.25 10.73 0.37 0.00 -4.25 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 32 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.12 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.41 15.07 6.60 -92.70 -0.61 14.46 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.05 2.66 6.15 -2.39 -0.01 2.65 16 38 H -0.01 -0.48 7.75 -2.38 -0.02 -0.49 16 39 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.04 1.58 7.67 -2.39 -0.02 1.56 16 42 H 0.05 1.89 7.40 -2.39 -0.02 1.88 16 43 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.27 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -72.78 367.72 0.78 -72.00 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.40 Total: 24.03 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 6.93 Total: 24.40 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -6.91 Total: -131.97 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.66 Total: -35.55 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -72.78 0.78 -72.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947877775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.456 kcal (2) G-P(sol) polarization free energy of solvation -72.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds