Wall clock time and date at job start Tue Mar 31 2020 14:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99797 * 2 1 4 4 C 1.50702 * 109.47163 * 180.02562 * 3 2 1 5 5 N 1.30014 * 127.33404 * 270.14654 * 4 3 2 6 6 O 1.20666 * 112.29831 * 180.27348 * 5 4 3 7 7 C 1.33485 * 113.15921 * 359.73003 * 6 5 4 8 8 C 1.37364 * 106.34129 * 0.02562 * 7 6 5 9 9 C 1.47403 * 128.56348 * 179.97438 * 8 7 6 10 10 O 1.21607 * 119.99393 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99944 * 0.02649 * 9 8 7 12 12 C 1.46503 * 119.99720 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.45798 * 324.96551 * 12 11 9 14 14 C 1.53036 * 109.46184 * 84.93152 * 12 11 9 15 15 C 1.53193 * 109.30920 * 181.38803 * 14 12 11 16 16 N 1.46929 * 108.77384 * 305.35915 * 15 14 12 17 17 C 1.36937 * 120.63265 * 233.58895 * 16 15 14 18 18 H 1.08000 * 120.00244 * 151.84610 * 17 16 15 19 19 C 1.38815 * 119.99912 * 331.84697 * 17 16 15 20 20 N 1.31612 * 120.00090 * 343.08116 * 19 17 16 21 21 Si 1.86795 * 119.99858 * 163.08060 * 19 17 16 22 22 H 1.48499 * 109.47515 * 60.00174 * 21 19 17 23 23 H 1.48498 * 109.47316 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47577 * 299.99882 * 21 19 17 25 25 C 1.46925 * 118.73703 * 53.61404 * 16 15 14 26 26 H 1.08999 * 109.58678 * 186.59740 * 25 16 15 27 27 C 1.52998 * 109.58581 * 66.17556 * 25 16 15 28 28 C 1.53040 * 109.45820 * 205.00149 * 12 11 9 29 29 H 1.08994 * 109.47410 * 60.00319 * 1 2 3 30 30 H 1.09002 * 109.46805 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47148 * 299.99716 * 1 2 3 32 32 H 1.08999 * 109.47507 * 59.99820 * 3 2 1 33 33 H 1.09004 * 109.47284 * 299.99596 * 3 2 1 34 34 H 1.08002 * 126.83383 * 179.97438 * 7 6 5 35 35 H 0.96997 * 119.99956 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.49569 * 301.33115 * 14 12 11 37 37 H 1.08992 * 109.50033 * 61.43483 * 14 12 11 38 38 H 1.08999 * 109.59315 * 65.15343 * 15 14 12 39 39 H 1.09007 * 109.58286 * 185.43557 * 15 14 12 40 40 H 0.97004 * 120.00272 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.47322 * 300.71083 * 27 25 16 42 42 H 1.09010 * 109.47326 * 60.71365 * 27 25 16 43 43 H 1.08996 * 109.47477 * 180.70795 * 27 25 16 44 44 H 1.09002 * 109.49958 * 298.56566 * 28 12 11 45 45 H 1.09001 * 109.49913 * 58.65841 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2987 1.1215 1.0328 6 8 5.4608 1.0357 0.7193 7 6 5.6484 1.0232 -0.6022 8 6 4.4014 1.1168 -1.1706 9 6 4.0429 1.1457 -2.6001 10 8 2.8765 1.2334 -2.9327 11 7 5.0078 1.0748 -3.5383 12 6 4.6515 1.1040 -4.9591 13 1 3.7051 0.5837 -5.1069 14 6 4.5119 2.5567 -5.4200 15 6 4.1055 2.5827 -6.8968 16 7 5.0769 1.7955 -7.6685 17 6 5.7112 2.3395 -8.7533 18 1 6.6935 1.9905 -9.0357 19 6 5.0918 3.3397 -9.4901 20 7 3.7960 3.5377 -9.3718 21 14 6.0973 4.4046 -10.6495 22 1 6.7396 3.5471 -11.6778 23 1 5.2074 5.3912 -11.3127 24 1 7.1446 5.1227 -9.8794 25 6 5.3542 0.4134 -7.2545 26 1 6.1736 0.0110 -7.8501 27 6 4.1022 -0.4429 -7.4544 28 6 5.7465 0.4116 -5.7737 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 6.5929 0.9541 -1.1214 35 1 5.9382 1.0052 -3.2730 36 1 3.7480 3.0557 -4.8236 37 1 5.4648 3.0709 -5.2957 38 1 3.1117 2.1496 -7.0101 39 1 4.0986 3.6120 -7.2557 40 1 3.3631 4.2364 -9.8870 41 1 3.2837 -0.0337 -6.8622 42 1 3.8247 -0.4404 -8.5086 43 1 4.3061 -1.4649 -7.1349 44 1 6.6879 0.9460 -5.6460 45 1 5.8615 -0.6161 -5.4290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947916152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:01 Heat of formation + Delta-G solvation = 3.428732 kcal Electronic energy + Delta-G solvation = -27961.656651 eV Core-core repulsion = 23983.577739 eV Total energy + Delta-G solvation = -3978.078913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.20794 -39.76699 -38.13630 -37.69943 -34.60673 -34.20827 -32.80859 -32.17405 -30.75373 -29.56371 -28.51191 -26.99599 -25.98808 -25.07640 -24.06545 -22.06572 -21.75244 -21.56499 -20.40179 -18.89694 -18.07976 -18.04677 -17.11768 -16.54680 -16.47741 -16.10974 -15.84389 -15.36387 -14.80412 -14.67446 -14.45432 -13.90725 -13.76865 -13.60146 -13.14462 -12.78160 -12.68003 -12.59596 -12.51903 -12.24938 -11.76830 -11.68411 -11.44291 -11.09715 -10.97305 -10.82308 -10.65107 -10.43094 -10.39165 -10.23501 -10.19249 -9.99683 -9.97860 -9.82192 -9.75289 -9.41072 -8.80451 -8.43981 -6.71186 -5.80660 -3.23741 0.84639 1.39626 2.65872 3.13859 3.19456 3.36804 3.43187 3.43477 3.50890 3.88488 4.18780 4.46677 4.58787 4.78296 4.96414 5.01801 5.15844 5.22511 5.25232 5.33891 5.36568 5.38317 5.49523 5.55139 5.58498 5.74141 5.97896 6.02817 6.21740 6.25591 6.36686 6.42297 6.54805 6.61117 6.75221 6.82046 6.84477 6.91742 7.13137 7.35026 7.54651 7.67240 7.77687 7.88523 8.23323 8.43442 9.19125 9.82381 10.39078 11.27587 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.002864 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.466465 B = 9773.973226 C =10165.529756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.142 3.858 4 C 0.064 3.936 5 N -0.341 5.341 6 O 0.105 5.895 7 C -0.013 4.013 8 C -0.231 4.231 9 C 0.589 3.411 10 O -0.523 6.523 11 N -0.716 5.716 12 C 0.151 3.849 13 H 0.088 0.912 14 C -0.147 4.147 15 C 0.174 3.826 16 N -0.585 5.585 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.005 3.995 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.171 3.829 26 H 0.066 0.934 27 C -0.163 4.163 28 C -0.133 4.133 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.229 0.771 35 H 0.393 0.607 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.089 0.911 40 H 0.255 0.745 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 -5.729 18.250 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.064 3.936 4 C -0.099 4.099 5 N -0.046 5.046 6 O 0.041 5.959 7 C -0.095 4.095 8 C -0.238 4.238 9 C 0.374 3.626 10 O -0.399 6.399 11 N -0.366 5.366 12 C 0.048 3.952 13 H 0.106 0.894 14 C -0.188 4.188 15 C 0.048 3.952 16 N -0.306 5.306 17 C -0.385 4.385 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.544 5.544 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.062 3.938 26 H 0.084 0.916 27 C -0.222 4.222 28 C -0.173 4.173 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.245 0.755 35 H 0.226 0.774 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.377 -5.691 19.188 20.017 hybrid contribution 0.730 0.781 -1.320 1.699 sum 1.107 -4.909 17.868 18.563 Atomic orbital electron populations 1.22771 0.80010 1.03110 1.00353 1.87899 1.20364 1.26273 1.95539 1.20578 0.84122 0.86217 1.02640 1.24374 0.97483 1.01249 0.86778 1.73669 0.89517 1.17828 1.23567 1.84578 1.21597 1.66424 1.23278 1.26423 1.00365 0.98838 0.83825 1.22507 0.92634 1.12668 0.96033 1.16812 0.85848 0.77117 0.82775 1.90808 1.18313 1.49125 1.81701 1.46179 1.08886 1.74181 1.07318 1.21180 0.99467 0.98071 0.76485 0.89375 1.22585 1.00993 0.94403 1.00784 1.20734 0.90848 0.98609 0.85017 1.44159 1.48878 1.06661 1.30928 1.19114 0.97438 1.17536 1.04391 0.91702 1.25055 0.95020 1.01541 0.97817 1.70017 1.07568 1.33511 1.43267 0.86386 0.79355 0.80413 0.80672 1.20908 1.21676 1.21070 1.20434 0.95577 0.86831 0.90945 0.91578 1.22308 1.00147 0.97822 1.01960 1.22315 0.97842 0.98880 0.98228 0.93243 0.89314 0.94011 0.91447 0.89130 0.75527 0.77398 0.92870 0.92603 0.96019 0.89303 0.93535 0.93174 0.92595 0.94471 0.91804 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.13 10.69 -35.23 -0.38 -5.50 16 3 C 0.14 1.75 6.19 36.01 0.22 1.98 16 4 C 0.06 0.84 7.21 -79.77 -0.58 0.26 16 5 N -0.34 -4.26 12.01 34.78 0.42 -3.84 16 6 O 0.10 1.06 11.06 18.67 0.21 1.26 16 7 C -0.01 -0.10 11.85 30.41 0.36 0.26 16 8 C -0.23 -2.80 6.47 -102.89 -0.67 -3.46 16 9 C 0.59 8.61 7.78 -12.53 -0.10 8.51 16 10 O -0.52 -9.60 15.36 5.27 0.08 -9.52 16 11 N -0.72 -9.26 5.07 -54.85 -0.28 -9.54 16 12 C 0.15 2.45 2.21 -67.89 -0.15 2.30 16 13 H 0.09 1.64 5.94 -51.93 -0.31 1.33 16 14 C -0.15 -2.79 5.65 -26.61 -0.15 -2.94 16 15 C 0.17 4.06 4.88 -3.71 -0.02 4.04 16 16 N -0.58 -13.82 2.70 -164.77 -0.44 -14.26 16 17 C -0.26 -6.71 9.58 -15.06 -0.14 -6.85 16 18 H 0.07 1.67 7.88 -52.49 -0.41 1.25 16 19 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 20 N -0.90 -25.57 11.19 55.49 0.62 -24.95 16 21 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.17 3.30 3.29 -67.60 -0.22 3.08 16 26 H 0.07 1.28 7.93 -51.93 -0.41 0.86 16 27 C -0.16 -3.04 9.02 37.16 0.34 -2.70 16 28 C -0.13 -2.06 5.02 -26.61 -0.13 -2.20 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.17 7.11 -51.93 -0.37 0.80 16 34 H 0.23 0.70 7.68 -52.49 -0.40 0.30 16 35 H 0.39 3.62 7.79 -40.82 -0.32 3.31 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.54 7.48 -51.93 -0.39 0.15 16 39 H 0.09 2.34 6.07 -51.92 -0.31 2.02 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.05 0.97 5.72 -51.93 -0.30 0.68 16 42 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -32.87 367.41 -6.06 -38.93 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.59 Total: 1.97 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.21 Total: 3.75 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.32 Total: -52.59 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.09 Total: -13.76 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.87 -6.06 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947916152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.361 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds