Wall clock time and date at job start Tue Mar 31 2020 14:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99797 * 2 1 4 4 C 1.50702 * 109.47163 * 180.02562 * 3 2 1 5 5 N 1.30014 * 127.33404 * 270.14654 * 4 3 2 6 6 O 1.20666 * 112.29831 * 180.27348 * 5 4 3 7 7 C 1.33485 * 113.15921 * 359.73003 * 6 5 4 8 8 C 1.37364 * 106.34129 * 0.02562 * 7 6 5 9 9 C 1.47403 * 128.56348 * 179.97438 * 8 7 6 10 10 O 1.21607 * 119.99393 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99944 * 0.02649 * 9 8 7 12 12 C 1.46503 * 119.99720 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.45798 * 324.96551 * 12 11 9 14 14 C 1.53036 * 109.46184 * 84.93152 * 12 11 9 15 15 C 1.53193 * 109.30920 * 181.38803 * 14 12 11 16 16 N 1.46929 * 108.77384 * 305.35915 * 15 14 12 17 17 C 1.36937 * 120.63265 * 233.58895 * 16 15 14 18 18 H 1.08000 * 120.00244 * 151.84610 * 17 16 15 19 19 C 1.38815 * 119.99912 * 331.84697 * 17 16 15 20 20 N 1.31612 * 120.00090 * 343.08116 * 19 17 16 21 21 Si 1.86795 * 119.99858 * 163.08060 * 19 17 16 22 22 H 1.48499 * 109.47515 * 60.00174 * 21 19 17 23 23 H 1.48498 * 109.47316 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47577 * 299.99882 * 21 19 17 25 25 C 1.46925 * 118.73703 * 53.61404 * 16 15 14 26 26 H 1.08999 * 109.58678 * 186.59740 * 25 16 15 27 27 C 1.52998 * 109.58581 * 66.17556 * 25 16 15 28 28 C 1.53040 * 109.45820 * 205.00149 * 12 11 9 29 29 H 1.08994 * 109.47410 * 60.00319 * 1 2 3 30 30 H 1.09002 * 109.46805 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47148 * 299.99716 * 1 2 3 32 32 H 1.08999 * 109.47507 * 59.99820 * 3 2 1 33 33 H 1.09004 * 109.47284 * 299.99596 * 3 2 1 34 34 H 1.08002 * 126.83383 * 179.97438 * 7 6 5 35 35 H 0.96997 * 119.99956 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.49569 * 301.33115 * 14 12 11 37 37 H 1.08992 * 109.50033 * 61.43483 * 14 12 11 38 38 H 1.08999 * 109.59315 * 65.15343 * 15 14 12 39 39 H 1.09007 * 109.58286 * 185.43557 * 15 14 12 40 40 H 0.97004 * 120.00272 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.47322 * 300.71083 * 27 25 16 42 42 H 1.09010 * 109.47326 * 60.71365 * 27 25 16 43 43 H 1.08996 * 109.47477 * 180.70795 * 27 25 16 44 44 H 1.09002 * 109.49958 * 298.56566 * 28 12 11 45 45 H 1.09001 * 109.49913 * 58.65841 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2987 1.1215 1.0328 6 8 5.4608 1.0357 0.7193 7 6 5.6484 1.0232 -0.6022 8 6 4.4014 1.1168 -1.1706 9 6 4.0429 1.1457 -2.6001 10 8 2.8765 1.2334 -2.9327 11 7 5.0078 1.0748 -3.5383 12 6 4.6515 1.1040 -4.9591 13 1 3.7051 0.5837 -5.1069 14 6 4.5119 2.5567 -5.4200 15 6 4.1055 2.5827 -6.8968 16 7 5.0769 1.7955 -7.6685 17 6 5.7112 2.3395 -8.7533 18 1 6.6935 1.9905 -9.0357 19 6 5.0918 3.3397 -9.4901 20 7 3.7960 3.5377 -9.3718 21 14 6.0973 4.4046 -10.6495 22 1 6.7396 3.5471 -11.6778 23 1 5.2074 5.3912 -11.3127 24 1 7.1446 5.1227 -9.8794 25 6 5.3542 0.4134 -7.2545 26 1 6.1736 0.0110 -7.8501 27 6 4.1022 -0.4429 -7.4544 28 6 5.7465 0.4116 -5.7737 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 6.5929 0.9541 -1.1214 35 1 5.9382 1.0052 -3.2730 36 1 3.7480 3.0557 -4.8236 37 1 5.4648 3.0709 -5.2957 38 1 3.1117 2.1496 -7.0101 39 1 4.0986 3.6120 -7.2557 40 1 3.3631 4.2364 -9.8870 41 1 3.2837 -0.0337 -6.8622 42 1 3.8247 -0.4404 -8.5086 43 1 4.3061 -1.4649 -7.1349 44 1 6.6879 0.9460 -5.6460 45 1 5.8615 -0.6161 -5.4290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947916152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:00 Heat of formation + Delta-G solvation = -20.167033 kcal Electronic energy + Delta-G solvation = -27962.679840 eV Core-core repulsion = 23983.577739 eV Total energy + Delta-G solvation = -3979.102102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.07646 -41.00938 -39.32862 -38.91878 -36.05919 -35.11229 -34.38303 -33.30730 -32.33568 -31.19653 -29.41383 -28.53936 -26.85901 -26.36830 -25.59256 -23.70030 -23.18629 -22.44249 -21.53496 -20.23484 -19.37372 -18.91482 -18.57198 -17.78239 -17.37248 -17.36562 -16.84663 -16.63682 -16.24538 -15.93564 -15.67111 -15.48982 -15.33206 -14.74755 -14.54022 -14.27457 -14.15028 -13.88414 -13.59796 -13.39167 -13.12462 -12.91693 -12.61096 -12.58433 -12.56248 -12.51367 -12.28128 -12.04455 -12.00337 -11.76050 -11.47872 -11.31278 -11.28130 -10.98159 -10.84620 -10.76662 -10.52694 -10.01775 -8.65745 -7.83461 -5.28617 0.06065 0.49401 1.49424 1.51473 1.57878 1.83400 2.10979 2.22561 2.54026 2.64808 3.03451 3.32173 3.36175 3.64503 3.73324 3.82827 3.96888 4.11125 4.13458 4.24701 4.31818 4.44298 4.47749 4.49611 4.54985 4.61927 4.64765 4.73341 4.77825 4.78910 4.87373 4.92643 5.12067 5.15713 5.19633 5.36479 5.47129 5.49924 5.58185 5.70947 5.79082 5.99250 6.43350 6.52861 7.09236 7.18457 7.19267 7.90701 8.42618 9.22893 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.002864 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.466465 B = 9773.973226 C =10165.529756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.141 3.859 4 C 0.041 3.959 5 N -0.356 5.356 6 O 0.114 5.886 7 C 0.037 3.963 8 C -0.266 4.266 9 C 0.592 3.408 10 O -0.571 6.571 11 N -0.698 5.698 12 C 0.163 3.837 13 H 0.063 0.937 14 C -0.132 4.132 15 C 0.185 3.815 16 N -0.599 5.599 17 C -0.258 4.258 18 H 0.073 0.927 19 C -0.052 4.052 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.301 1.301 24 H -0.277 1.277 25 C 0.160 3.840 26 H 0.071 0.929 27 C -0.155 4.155 28 C -0.118 4.118 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.286 0.714 35 H 0.416 0.584 36 H 0.043 0.957 37 H 0.064 0.936 38 H -0.011 1.011 39 H 0.051 0.949 40 H 0.247 0.753 41 H 0.033 0.967 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 -6.972 19.972 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.064 3.936 4 C -0.121 4.121 5 N -0.061 5.061 6 O 0.050 5.950 7 C -0.045 4.045 8 C -0.274 4.274 9 C 0.379 3.621 10 O -0.450 6.450 11 N -0.349 5.349 12 C 0.059 3.941 13 H 0.082 0.918 14 C -0.172 4.172 15 C 0.058 3.942 16 N -0.322 5.322 17 C -0.388 4.388 18 H 0.091 0.909 19 C -0.247 4.247 20 N -0.583 5.583 21 Si 0.793 3.207 22 H -0.201 1.201 23 H -0.227 1.227 24 H -0.203 1.203 25 C 0.053 3.947 26 H 0.089 0.911 27 C -0.214 4.214 28 C -0.157 4.157 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.301 0.699 35 H 0.254 0.746 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.007 0.993 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.644 -6.966 20.954 22.380 hybrid contribution -0.257 1.104 -1.822 2.146 sum 3.387 -5.863 19.132 20.295 Atomic orbital electron populations 1.22961 0.78456 1.04251 1.01095 1.87848 1.22232 1.26960 1.95676 1.20573 0.84477 0.85970 1.02615 1.24590 0.97949 1.01977 0.87564 1.73674 0.90198 1.18545 1.23708 1.84565 1.20584 1.65599 1.24240 1.27352 1.00772 0.93763 0.82583 1.22231 0.94309 1.16467 0.94389 1.17102 0.85251 0.75904 0.83882 1.90796 1.20422 1.51252 1.82578 1.45771 1.09998 1.73659 1.05471 1.20761 0.99120 0.95630 0.78587 0.91838 1.22329 1.00780 0.96798 0.97338 1.20400 0.89749 0.96204 0.87821 1.44376 1.48491 1.08735 1.30554 1.19509 0.97723 1.17152 1.04404 0.90928 1.25803 0.95805 1.03206 0.99917 1.70195 1.09226 1.34141 1.44695 0.85385 0.77799 0.78598 0.78909 1.20076 1.22713 1.20261 1.20716 0.95770 0.84444 0.93753 0.91053 1.22204 0.99420 0.99876 0.99880 1.22144 0.97588 1.01195 0.94758 0.93745 0.88023 0.92011 0.89847 0.90692 0.69913 0.74592 0.93848 0.91710 0.99302 0.93008 0.94381 0.94778 0.95441 0.90712 0.90176 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -11.05 10.69 -148.98 -1.59 -12.64 16 3 C 0.14 3.54 6.19 71.24 0.44 3.98 16 4 C 0.04 1.04 7.21 45.16 0.33 1.37 16 5 N -0.36 -8.25 12.01 -44.77 -0.54 -8.78 16 6 O 0.11 1.89 11.06 77.04 0.85 2.74 16 7 C 0.04 0.43 11.85 67.61 0.80 1.23 16 8 C -0.27 -5.85 6.47 -18.74 -0.12 -5.97 16 9 C 0.59 16.43 7.78 86.66 0.67 17.10 16 10 O -0.57 -21.37 15.36 -4.05 -0.06 -21.43 16 11 N -0.70 -15.89 5.07 -445.70 -2.26 -18.15 16 12 C 0.16 5.04 2.21 45.02 0.10 5.14 16 13 H 0.06 2.35 5.94 -2.38 -0.01 2.33 16 14 C -0.13 -5.00 5.65 30.67 0.17 -4.83 16 15 C 0.18 8.95 4.88 86.36 0.42 9.37 16 16 N -0.60 -28.46 2.70 -675.22 -1.82 -30.28 16 17 C -0.26 -13.56 9.58 84.03 0.81 -12.76 16 18 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 19 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 20 N -0.94 -55.54 11.19 21.65 0.24 -55.29 16 21 Si 0.96 44.13 29.59 68.60 2.03 46.16 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 25 C 0.16 5.93 3.29 44.97 0.15 6.08 16 26 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 27 C -0.15 -5.67 9.02 71.98 0.65 -5.02 16 28 C -0.12 -3.22 5.02 30.67 0.15 -3.06 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 2.07 7.11 -2.39 -0.02 2.05 16 34 H 0.29 -0.35 7.68 -2.91 -0.02 -0.37 16 35 H 0.42 5.48 7.79 -92.71 -0.72 4.76 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H -0.01 -0.60 7.48 -2.39 -0.02 -0.62 16 39 H 0.05 2.87 6.07 -2.38 -0.01 2.86 16 40 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.03 1.34 5.72 -2.39 -0.01 1.33 16 42 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -77.04 367.41 3.38 -73.66 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.29 Total: 12.04 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 6.24 Total: 11.98 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -4.38 Total: -112.51 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.80 Total: -31.33 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.04 3.38 -73.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947916152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.490 kcal (2) G-P(sol) polarization free energy of solvation -77.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds