Wall clock time and date at job start Tue Mar 31 2020 14:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46975 * 2 1 4 4 C 1.35358 * 116.99856 * 179.97438 * 3 2 1 5 5 N 1.30554 * 125.44415 * 180.31909 * 4 3 2 6 6 C 1.36327 * 108.37694 * 180.15490 * 5 4 3 7 7 C 1.47371 * 126.40976 * 179.85994 * 6 5 4 8 8 O 1.21618 * 120.00434 * 179.68809 * 7 6 5 9 9 N 1.34782 * 120.00142 * 359.69396 * 7 6 5 10 10 C 1.46496 * 120.00364 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.49527 * 324.94061 * 10 9 7 12 12 C 1.53202 * 109.49574 * 84.99723 * 10 9 7 13 13 N 1.46927 * 108.77469 * 174.58675 * 12 10 9 14 14 C 1.36934 * 120.62706 * 126.41479 * 13 12 10 15 15 H 1.08003 * 120.00030 * 331.82319 * 14 13 12 16 16 C 1.38816 * 119.99912 * 151.82954 * 14 13 12 17 17 N 1.31612 * 119.99500 * 343.06625 * 16 14 13 18 18 Si 1.86794 * 120.00031 * 163.06801 * 16 14 13 19 19 H 1.48504 * 109.47182 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47444 * 119.99722 * 18 16 14 21 21 H 1.48500 * 109.47244 * 239.99848 * 18 16 14 22 22 C 1.46923 * 118.74049 * 306.39389 * 13 12 10 23 23 C 1.53195 * 108.77630 * 53.60645 * 22 13 12 24 24 C 1.53035 * 109.50001 * 204.83608 * 10 9 7 25 25 H 1.09007 * 109.45949 * 298.70562 * 24 10 9 26 26 C 1.52998 * 109.45979 * 58.66664 * 24 10 9 27 27 C 1.35912 * 107.18007 * 359.60045 * 6 5 4 28 28 O 1.34198 * 125.44352 * 0.02828 * 4 3 2 29 29 H 1.09000 * 109.46949 * 59.99545 * 1 2 3 30 30 H 1.08996 * 109.47263 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47155 * 299.99777 * 1 2 3 32 32 H 1.08997 * 109.46816 * 240.00623 * 2 1 3 33 33 H 1.09002 * 109.47163 * 119.99958 * 2 1 3 34 34 H 0.96998 * 119.99689 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.58402 * 54.79990 * 12 10 9 36 36 H 1.09002 * 109.70005 * 294.44623 * 12 10 9 37 37 H 0.97002 * 119.99590 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.58401 * 293.82431 * 22 13 12 39 39 H 1.08994 * 109.70467 * 173.46640 * 22 13 12 40 40 H 1.08998 * 109.49392 * 65.31893 * 23 22 13 41 41 H 1.08996 * 109.49614 * 185.41168 * 23 22 13 42 42 H 1.08999 * 109.47359 * 180.02562 * 26 24 10 43 43 H 1.09005 * 109.46709 * 300.06430 * 26 24 10 44 44 H 1.08992 * 109.47600 * 60.06531 * 26 24 10 45 45 H 1.07996 * 126.46101 * 180.21582 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3483 1.5246 0.0005 5 7 3.9595 2.6782 0.0065 6 6 5.3039 2.4524 0.0014 7 6 6.3631 3.4771 0.0025 8 8 7.5325 3.1430 0.0032 9 7 6.0358 4.7845 0.0028 10 6 7.0887 5.8032 0.0044 11 1 7.9343 5.4514 0.5953 12 6 7.5452 6.0689 -1.4337 13 7 8.5049 7.1814 -1.4272 14 6 9.7380 7.0423 -2.0062 15 1 10.2021 6.0686 -2.0611 16 6 10.3917 8.1528 -2.5224 17 7 9.7199 9.2587 -2.7633 18 14 12.2245 8.0776 -2.8751 19 1 12.7422 6.7320 -2.5194 20 1 12.4619 8.3342 -4.3184 21 1 12.9267 9.1070 -2.0673 22 6 8.1163 8.4460 -0.7882 23 6 7.6534 8.1536 0.6426 24 6 6.5448 7.0990 0.6104 25 1 5.7149 7.4628 0.0046 26 6 6.0561 6.8296 2.0349 27 6 5.4847 1.1053 0.0010 28 8 4.2630 0.5427 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.1032 5.0510 0.0019 35 1 6.6840 6.3328 -2.0476 36 1 8.0228 5.1766 -1.8384 37 1 10.1766 10.0346 -3.1244 38 1 7.3017 8.9037 -1.3494 39 1 8.9698 9.1235 -0.7649 40 1 8.4938 7.7803 1.2277 41 1 7.2720 9.0687 1.0957 42 1 5.6683 7.7523 2.4666 43 1 5.2665 6.0785 2.0122 44 1 6.8858 6.4663 2.6412 45 1 6.4309 0.5847 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967255194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:48 Heat of formation + Delta-G solvation = -28.678316 kcal Electronic energy + Delta-G solvation = -27550.130337 eV Core-core repulsion = 23570.659158 eV Total energy + Delta-G solvation = -3979.471179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.65194 -39.69641 -39.22697 -37.58170 -35.13629 -34.41418 -32.90790 -32.39122 -31.04678 -29.84614 -28.85811 -27.27645 -24.75827 -24.08452 -23.75614 -22.70925 -21.84170 -20.98298 -20.37233 -19.64644 -18.83604 -17.84576 -17.28520 -16.74295 -16.55056 -15.97441 -15.63496 -15.26968 -14.79488 -14.53580 -14.08518 -13.69570 -13.68262 -13.40855 -13.36853 -13.29720 -13.26210 -13.06724 -12.41460 -12.27785 -11.97748 -11.79840 -11.57566 -11.45108 -11.14956 -10.98616 -10.97789 -10.78115 -10.59944 -10.20337 -10.13703 -10.08449 -9.83082 -9.58683 -9.51677 -8.94335 -8.72215 -8.35129 -6.61515 -5.73493 -3.15727 0.96696 1.61390 1.90122 2.44832 3.28433 3.40573 3.42363 3.50080 3.54139 4.27828 4.28787 4.32335 4.56774 4.60791 4.69970 4.89124 5.16015 5.18205 5.18410 5.29366 5.36271 5.45136 5.47616 5.54572 5.60997 5.67013 5.97510 6.04304 6.13270 6.24336 6.29151 6.36742 6.38005 6.62109 6.67879 6.72821 6.79440 6.89236 7.04822 7.28045 7.41427 7.70551 7.80447 7.88309 8.38183 8.51668 9.27307 9.89556 10.45710 11.35258 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.002646 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.303836 B =10581.305488 C =11209.607455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.246 6.246 4 C 0.380 3.620 5 N -0.454 5.454 6 C -0.040 4.040 7 C 0.598 3.402 8 O -0.530 6.530 9 N -0.698 5.698 10 C 0.132 3.868 11 H 0.088 0.912 12 C 0.141 3.859 13 N -0.587 5.587 14 C -0.248 4.248 15 H 0.067 0.933 16 C 0.001 3.999 17 N -0.904 5.904 18 Si 0.902 3.098 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.167 3.833 23 C -0.133 4.133 24 C -0.091 4.091 25 H 0.068 0.932 26 C -0.145 4.145 27 C -0.002 4.002 28 O -0.227 6.227 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.405 0.595 35 H 0.019 0.981 36 H 0.059 0.941 37 H 0.252 0.748 38 H 0.019 0.981 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.675 -17.030 8.649 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.154 6.154 4 C 0.134 3.866 5 N -0.200 5.200 6 C -0.159 4.159 7 C 0.382 3.618 8 O -0.407 6.407 9 N -0.348 5.348 10 C 0.027 3.973 11 H 0.107 0.893 12 C 0.013 3.987 13 N -0.310 5.310 14 C -0.377 4.377 15 H 0.085 0.915 16 C -0.197 4.197 17 N -0.549 5.549 18 Si 0.732 3.268 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.041 3.959 23 C -0.173 4.173 24 C -0.110 4.110 25 H 0.087 0.913 26 C -0.202 4.202 27 C -0.074 4.074 28 O -0.119 6.119 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.240 0.760 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -17.299 -16.444 8.571 25.360 hybrid contribution 0.660 -0.726 -0.260 1.015 sum -16.640 -17.170 8.312 25.313 Atomic orbital electron populations 1.21813 0.91236 1.03630 1.04251 1.23052 0.96845 0.79425 1.03045 1.86384 1.09013 1.30744 1.89265 1.23292 0.83434 0.81660 0.98235 1.71122 1.04020 1.21472 1.23405 1.21861 0.90158 0.94210 1.09685 1.16634 0.86039 0.81927 0.77237 1.90869 1.17755 1.81297 1.50797 1.45954 1.11201 1.04992 1.72644 1.21852 0.89202 0.85909 1.00375 0.89348 1.21201 0.93029 0.92608 0.91815 1.43999 1.13362 1.09414 1.64215 1.19264 0.92371 0.94702 1.31403 0.91518 1.25036 0.98656 0.97354 0.98683 1.70047 1.34101 1.03533 1.47170 0.86217 0.85547 0.77601 0.77430 1.20172 1.21791 1.21582 1.20844 0.99351 0.88639 0.87037 1.22246 0.96868 0.96556 1.01587 1.21304 0.98884 0.95224 0.95594 0.91345 1.21859 1.00703 1.00831 0.96840 1.24986 0.85727 0.92971 1.03728 1.84380 1.16296 1.39166 1.72016 0.90913 0.89466 0.90957 0.90780 0.90832 0.76044 0.96359 0.92289 0.93756 0.96299 0.89273 0.92396 0.92679 0.92946 0.93218 0.92974 0.74729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 10.28 37.16 0.38 -0.18 16 2 C 0.05 0.29 6.38 37.16 0.24 0.53 16 3 O -0.25 -2.40 10.19 -41.00 -0.42 -2.82 16 4 C 0.38 4.45 8.98 52.22 0.47 4.92 16 5 N -0.45 -6.28 11.10 -11.71 -0.13 -6.41 16 6 C -0.04 -0.56 6.99 -82.99 -0.58 -1.14 16 7 C 0.60 9.92 7.78 -12.54 -0.10 9.82 16 8 O -0.53 -10.34 16.55 5.26 0.09 -10.25 16 9 N -0.70 -11.25 4.37 -54.78 -0.24 -11.49 16 10 C 0.13 2.45 2.06 -67.81 -0.14 2.31 16 11 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 12 C 0.14 3.16 6.09 -3.71 -0.02 3.14 16 13 N -0.59 -15.14 2.99 -172.31 -0.52 -15.65 16 14 C -0.25 -7.03 9.58 -15.06 -0.14 -7.17 16 15 H 0.07 1.91 7.89 -52.48 -0.41 1.49 16 16 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 17 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 18 Si 0.90 22.25 29.59 -169.99 -5.03 17.22 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 23 C -0.13 -2.52 5.36 -26.61 -0.14 -2.66 16 24 C -0.09 -1.53 2.27 -90.58 -0.21 -1.73 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 C -0.14 -2.03 9.02 37.16 0.34 -1.69 16 27 C 0.00 -0.02 11.93 29.90 0.36 0.33 16 28 O -0.23 -2.36 10.20 -17.76 -0.18 -2.54 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.40 5.86 8.03 -40.82 -0.33 5.54 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.65 7.35 -51.93 -0.38 0.27 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.24 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -33.10 373.36 -6.71 -39.81 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.87 Total: 2.06 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 0.34 Total: 10.38 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.26 Total: -59.49 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.51 Total: -15.62 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.10 -6.71 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967255194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.137 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds