Wall clock time and date at job start Tue Mar 31 2020 14:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46975 * 2 1 4 4 C 1.35358 * 116.99856 * 179.97438 * 3 2 1 5 5 N 1.30554 * 125.44415 * 180.31909 * 4 3 2 6 6 C 1.36327 * 108.37694 * 180.15490 * 5 4 3 7 7 C 1.47371 * 126.40976 * 179.85994 * 6 5 4 8 8 O 1.21618 * 120.00434 * 179.68809 * 7 6 5 9 9 N 1.34782 * 120.00142 * 359.69396 * 7 6 5 10 10 C 1.46496 * 120.00364 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.49527 * 324.94061 * 10 9 7 12 12 C 1.53202 * 109.49574 * 84.99723 * 10 9 7 13 13 N 1.46927 * 108.77469 * 174.58675 * 12 10 9 14 14 C 1.36934 * 120.62706 * 126.41479 * 13 12 10 15 15 H 1.08003 * 120.00030 * 331.82319 * 14 13 12 16 16 C 1.38816 * 119.99912 * 151.82954 * 14 13 12 17 17 N 1.31612 * 119.99500 * 343.06625 * 16 14 13 18 18 Si 1.86794 * 120.00031 * 163.06801 * 16 14 13 19 19 H 1.48504 * 109.47182 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47444 * 119.99722 * 18 16 14 21 21 H 1.48500 * 109.47244 * 239.99848 * 18 16 14 22 22 C 1.46923 * 118.74049 * 306.39389 * 13 12 10 23 23 C 1.53195 * 108.77630 * 53.60645 * 22 13 12 24 24 C 1.53035 * 109.50001 * 204.83608 * 10 9 7 25 25 H 1.09007 * 109.45949 * 298.70562 * 24 10 9 26 26 C 1.52998 * 109.45979 * 58.66664 * 24 10 9 27 27 C 1.35912 * 107.18007 * 359.60045 * 6 5 4 28 28 O 1.34198 * 125.44352 * 0.02828 * 4 3 2 29 29 H 1.09000 * 109.46949 * 59.99545 * 1 2 3 30 30 H 1.08996 * 109.47263 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47155 * 299.99777 * 1 2 3 32 32 H 1.08997 * 109.46816 * 240.00623 * 2 1 3 33 33 H 1.09002 * 109.47163 * 119.99958 * 2 1 3 34 34 H 0.96998 * 119.99689 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.58402 * 54.79990 * 12 10 9 36 36 H 1.09002 * 109.70005 * 294.44623 * 12 10 9 37 37 H 0.97002 * 119.99590 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.58401 * 293.82431 * 22 13 12 39 39 H 1.08994 * 109.70467 * 173.46640 * 22 13 12 40 40 H 1.08998 * 109.49392 * 65.31893 * 23 22 13 41 41 H 1.08996 * 109.49614 * 185.41168 * 23 22 13 42 42 H 1.08999 * 109.47359 * 180.02562 * 26 24 10 43 43 H 1.09005 * 109.46709 * 300.06430 * 26 24 10 44 44 H 1.08992 * 109.47600 * 60.06531 * 26 24 10 45 45 H 1.07996 * 126.46101 * 180.21582 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3483 1.5246 0.0005 5 7 3.9595 2.6782 0.0065 6 6 5.3039 2.4524 0.0014 7 6 6.3631 3.4771 0.0025 8 8 7.5325 3.1430 0.0032 9 7 6.0358 4.7845 0.0028 10 6 7.0887 5.8032 0.0044 11 1 7.9343 5.4514 0.5953 12 6 7.5452 6.0689 -1.4337 13 7 8.5049 7.1814 -1.4272 14 6 9.7380 7.0423 -2.0062 15 1 10.2021 6.0686 -2.0611 16 6 10.3917 8.1528 -2.5224 17 7 9.7199 9.2587 -2.7633 18 14 12.2245 8.0776 -2.8751 19 1 12.7422 6.7320 -2.5194 20 1 12.4619 8.3342 -4.3184 21 1 12.9267 9.1070 -2.0673 22 6 8.1163 8.4460 -0.7882 23 6 7.6534 8.1536 0.6426 24 6 6.5448 7.0990 0.6104 25 1 5.7149 7.4628 0.0046 26 6 6.0561 6.8296 2.0349 27 6 5.4847 1.1053 0.0010 28 8 4.2630 0.5427 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.1032 5.0510 0.0019 35 1 6.6840 6.3328 -2.0476 36 1 8.0228 5.1766 -1.8384 37 1 10.1766 10.0346 -3.1244 38 1 7.3017 8.9037 -1.3494 39 1 8.9698 9.1235 -0.7649 40 1 8.4938 7.7803 1.2277 41 1 7.2720 9.0687 1.0957 42 1 5.6683 7.7523 2.4666 43 1 5.2665 6.0785 2.0122 44 1 6.8858 6.4663 2.6412 45 1 6.4309 0.5847 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967255194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:47 Heat of formation + Delta-G solvation = -54.106158 kcal Electronic energy + Delta-G solvation = -27551.232971 eV Core-core repulsion = 23570.659158 eV Total energy + Delta-G solvation = -3980.573813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.56029 -41.05860 -39.97804 -39.15547 -36.23894 -36.05207 -34.43631 -33.03296 -32.86852 -30.95573 -30.28250 -28.95534 -26.17663 -25.47245 -24.56018 -23.82790 -23.04645 -22.65661 -21.58053 -21.09881 -19.96343 -18.74458 -18.65094 -18.35131 -17.42573 -17.19457 -16.68342 -16.59929 -16.07954 -16.03139 -15.61099 -15.31217 -15.13725 -14.97662 -14.53726 -14.49269 -14.13121 -13.91893 -13.58207 -13.55827 -13.21028 -13.12980 -12.74937 -12.68780 -12.66618 -12.53545 -12.28976 -12.03368 -11.94258 -11.92812 -11.78917 -11.69975 -11.54167 -11.26434 -11.14872 -10.60349 -10.18557 -9.76959 -8.69224 -7.89644 -5.35740 0.00996 0.82446 0.90085 1.44833 1.46289 1.58067 1.63624 2.05098 2.19156 2.51186 3.24553 3.29801 3.69493 3.73646 3.76407 3.93654 3.96375 4.00510 4.07604 4.11849 4.27336 4.37417 4.44285 4.51660 4.64003 4.65774 4.76529 4.84547 4.87904 4.92387 4.95075 5.02823 5.08863 5.17963 5.19626 5.21636 5.42267 5.45118 5.54332 5.63404 5.63834 5.77267 6.29260 6.37676 6.58419 7.09203 7.13968 7.81933 8.33226 9.16505 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.002646 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.303836 B =10581.305488 C =11209.607455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.255 6.255 4 C 0.386 3.614 5 N -0.480 5.480 6 C -0.072 4.072 7 C 0.600 3.400 8 O -0.566 6.566 9 N -0.691 5.691 10 C 0.150 3.850 11 H 0.067 0.933 12 C 0.144 3.856 13 N -0.605 5.605 14 C -0.265 4.265 15 H 0.056 0.944 16 C -0.046 4.046 17 N -0.930 5.930 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.172 3.828 23 C -0.121 4.121 24 C -0.084 4.084 25 H 0.075 0.925 26 C -0.135 4.135 27 C 0.029 3.971 28 O -0.214 6.214 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.016 0.984 36 H 0.035 0.965 37 H 0.252 0.748 38 H 0.002 0.998 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.070 -18.593 9.911 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.164 6.164 4 C 0.139 3.861 5 N -0.227 5.227 6 C -0.190 4.190 7 C 0.386 3.614 8 O -0.445 6.445 9 N -0.341 5.341 10 C 0.044 3.956 11 H 0.085 0.915 12 C 0.017 3.983 13 N -0.329 5.329 14 C -0.395 4.395 15 H 0.074 0.926 16 C -0.242 4.242 17 N -0.576 5.576 18 Si 0.795 3.205 19 H -0.197 1.197 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.046 3.954 23 C -0.160 4.160 24 C -0.103 4.103 25 H 0.094 0.906 26 C -0.192 4.192 27 C -0.044 4.044 28 O -0.105 6.105 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.252 0.748 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.021 0.979 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -18.755 -18.026 9.851 27.816 hybrid contribution 0.990 -0.356 -0.710 1.269 sum -17.765 -18.381 9.141 27.148 Atomic orbital electron populations 1.21864 0.89770 1.05079 1.03872 1.23451 0.97955 0.77756 1.04160 1.86424 1.07753 1.33311 1.88919 1.23324 0.84204 0.81407 0.97181 1.71005 1.04039 1.22836 1.24820 1.21449 0.89850 0.94514 1.13191 1.16941 0.86233 0.82267 0.75988 1.90845 1.19428 1.81845 1.52419 1.45769 1.11035 1.04653 1.72634 1.21372 0.89518 0.87571 0.97172 0.91509 1.21216 0.91993 0.90672 0.94432 1.44221 1.13355 1.10668 1.64658 1.19446 0.93781 0.94517 1.31772 0.92618 1.25768 1.02642 0.97006 0.98777 1.70180 1.35561 1.03979 1.47892 0.85213 0.80485 0.77695 0.77092 1.19663 1.21589 1.21037 1.20718 0.97466 0.87398 0.89774 1.22070 0.97496 0.98605 0.97854 1.21238 0.98086 0.93176 0.97812 0.90622 1.21761 1.00857 1.02311 0.94264 1.25536 0.86635 0.92099 1.00118 1.84429 1.15930 1.38546 1.71598 0.91404 0.87041 0.91220 0.89806 0.89575 0.74838 0.96626 0.94608 0.93885 0.97941 0.92465 0.93077 0.89832 0.90780 0.92035 0.93299 0.71907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 71.98 0.74 -0.03 16 2 C 0.04 0.36 6.38 71.98 0.46 0.82 16 3 O -0.26 -4.57 10.19 -64.27 -0.65 -5.22 16 4 C 0.39 8.37 8.98 130.43 1.17 9.54 16 5 N -0.48 -12.75 11.10 -419.38 -4.65 -17.41 16 6 C -0.07 -1.94 6.99 40.31 0.28 -1.66 16 7 C 0.60 19.85 7.78 86.65 0.67 20.52 16 8 O -0.57 -22.36 16.55 -4.09 -0.07 -22.42 16 9 N -0.69 -22.09 4.37 -445.47 -1.95 -24.04 16 10 C 0.15 5.61 2.06 45.07 0.09 5.70 16 11 H 0.07 2.83 7.58 -2.39 -0.02 2.82 16 12 C 0.14 6.67 6.09 86.37 0.53 7.20 16 13 N -0.61 -32.30 2.99 -699.08 -2.09 -34.39 16 14 C -0.26 -15.55 9.58 84.03 0.81 -14.74 16 15 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 16 C -0.05 -2.68 4.92 84.86 0.42 -2.26 16 17 N -0.93 -56.08 11.19 21.65 0.24 -55.84 16 18 Si 0.97 46.64 29.59 68.60 2.03 48.67 16 19 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 C 0.17 8.43 5.30 86.36 0.46 8.89 16 23 C -0.12 -4.50 5.36 30.67 0.16 -4.34 16 24 C -0.08 -2.72 2.27 -10.77 -0.02 -2.74 16 25 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 26 C -0.13 -3.41 9.02 71.98 0.65 -2.76 16 27 C 0.03 0.57 11.93 67.28 0.80 1.38 16 28 O -0.21 -3.93 10.20 18.86 0.19 -3.74 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.41 11.66 8.03 -92.71 -0.74 10.92 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.04 1.78 7.93 -2.39 -0.02 1.76 16 37 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.43 7.35 -2.38 -0.02 1.42 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.27 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -74.04 373.36 0.53 -73.51 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.26 Total: 15.37 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 7.22 Total: 25.51 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -8.45 Total: -131.68 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.53 Total: -31.38 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -74.04 0.53 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967255194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.403 kcal (2) G-P(sol) polarization free energy of solvation -74.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds