Wall clock time and date at job start Tue Mar 31 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47260 * 2 1 4 4 C 1.35734 * 116.99738 * 180.02562 * 3 2 1 5 5 C 1.41854 * 126.78281 * 180.02562 * 4 3 2 6 6 C 1.36661 * 103.81271 * 180.02562 * 5 4 3 7 7 C 1.47542 * 126.88539 * 179.97438 * 6 5 4 8 8 O 1.21587 * 119.99630 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00563 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00164 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.49444 * 35.00133 * 10 9 7 12 12 C 1.53180 * 109.49699 * 274.93423 * 10 9 7 13 13 N 1.46927 * 108.77714 * 185.41222 * 12 10 9 14 14 C 1.36934 * 120.63562 * 233.58697 * 13 12 10 15 15 H 1.08007 * 120.00017 * 151.82571 * 14 13 12 16 16 C 1.38816 * 120.00063 * 331.83486 * 14 13 12 17 17 N 1.31623 * 119.99470 * 343.07882 * 16 14 13 18 18 Si 1.86795 * 120.00258 * 163.08338 * 16 14 13 19 19 H 1.48505 * 109.47270 * 59.99482 * 18 16 14 20 20 H 1.48496 * 109.47086 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47149 * 300.00002 * 18 16 14 22 22 C 1.46927 * 118.73481 * 53.61063 * 13 12 10 23 23 C 1.53194 * 108.77614 * 306.39055 * 22 13 12 24 24 C 1.53033 * 109.33705 * 54.62027 * 23 22 13 25 25 H 1.09000 * 109.43480 * 58.69276 * 24 23 22 26 26 C 1.53007 * 109.48650 * 178.64489 * 24 23 22 27 27 O 1.34666 * 106.23977 * 359.97438 * 6 5 4 28 28 N 1.20877 * 111.63193 * 359.70628 * 27 6 5 29 29 H 1.09002 * 109.47556 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47367 * 59.99084 * 1 2 3 31 31 H 1.09007 * 109.46902 * 299.99434 * 1 2 3 32 32 H 1.09004 * 109.47367 * 120.00915 * 2 1 3 33 33 H 1.09007 * 109.46902 * 240.00566 * 2 1 3 34 34 H 1.08002 * 128.09603 * 359.97438 * 5 4 3 35 35 H 0.97001 * 119.99688 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.59358 * 305.20147 * 12 10 9 37 37 H 1.09005 * 109.59156 * 65.62635 * 12 10 9 38 38 H 0.96996 * 119.99686 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.59304 * 66.17774 * 22 13 12 40 40 H 1.09003 * 109.58833 * 186.46335 * 22 13 12 41 41 H 1.08995 * 109.49835 * 174.58858 * 23 22 13 42 42 H 1.08998 * 109.49957 * 294.65574 * 23 22 13 43 43 H 1.09007 * 109.46849 * 180.08465 * 26 24 23 44 44 H 1.08997 * 109.47323 * 300.08841 * 26 24 23 45 45 H 1.09003 * 109.46750 * 60.08643 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3520 1.5250 -0.0005 5 6 4.0453 2.7626 -0.0001 6 6 5.3625 2.3986 -0.0016 7 6 6.5304 3.3002 -0.0024 8 8 6.3680 4.5052 -0.0022 9 7 7.7771 2.7883 -0.0033 10 6 8.9367 3.6836 -0.0047 11 1 8.7107 4.5724 0.5846 12 6 9.2642 4.0938 -1.4437 13 7 10.5031 4.8836 -1.4401 14 6 10.5426 6.1225 -2.0219 15 1 11.2338 6.8683 -1.6578 16 6 9.6941 6.4201 -3.0795 17 7 9.0999 5.4488 -3.7397 18 14 9.3956 8.1988 -3.5656 19 1 10.6838 8.8296 -3.9507 20 1 8.4580 8.2469 -4.7161 21 1 8.8085 8.9341 -2.4168 22 6 11.6992 4.3183 -0.8008 23 6 11.3444 3.9056 0.6312 24 6 10.1410 2.9606 0.6028 25 1 10.3814 2.0853 -0.0007 26 6 9.8047 2.5194 2.0287 27 8 5.3812 1.0521 -0.0021 28 7 4.2639 0.5909 0.0046 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5140 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.6294 3.7593 0.0003 35 1 7.9066 1.8270 -0.0030 36 1 9.4009 3.2023 -2.0558 37 1 8.4490 4.6948 -1.8470 38 1 8.5073 5.6566 -4.4789 39 1 12.0345 3.4451 -1.3602 40 1 12.4916 5.0666 -0.7819 41 1 12.1953 3.3975 1.0848 42 1 11.0969 4.7923 1.2147 43 1 8.9484 1.8452 2.0080 44 1 10.6623 2.0045 2.4616 45 1 9.5637 3.3944 2.6324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967402331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:42 Heat of formation + Delta-G solvation = 10.384007 kcal Electronic energy + Delta-G solvation = -27853.085039 eV Core-core repulsion = 23875.307730 eV Total energy + Delta-G solvation = -3977.777309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.04337 -39.70411 -39.19997 -37.68589 -34.50464 -33.65923 -33.21948 -32.03180 -31.39485 -30.96927 -28.95572 -27.38940 -24.85143 -24.06457 -23.54748 -23.27368 -21.85344 -21.06894 -20.57204 -19.70116 -18.58956 -18.04965 -17.06052 -16.83982 -16.19558 -16.02193 -15.74832 -14.96524 -14.78667 -14.37967 -14.11054 -13.75574 -13.68758 -13.54832 -13.39144 -13.36477 -13.09518 -13.00822 -12.43704 -12.21927 -12.05227 -11.68984 -11.61395 -11.46954 -11.45574 -10.90406 -10.73948 -10.68827 -10.47802 -10.25199 -10.16186 -9.94561 -9.89432 -9.74110 -9.53341 -9.47372 -8.69883 -8.43348 -6.66808 -5.76391 -3.20015 0.76141 1.99440 2.40536 2.61137 3.18503 3.42510 3.48180 3.49543 3.51580 3.96823 4.52717 4.54585 4.55031 4.68535 4.88608 4.91712 5.08473 5.14070 5.23443 5.28286 5.37541 5.38978 5.49702 5.57255 5.58952 5.66185 5.88290 5.98298 6.00505 6.08076 6.21617 6.34297 6.43260 6.45632 6.66305 6.71354 6.75674 6.80921 6.95552 7.22089 7.60444 7.68198 7.82889 7.96722 8.27002 8.47412 9.21948 9.85773 10.40613 11.31723 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.003292 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.097052 B = 8504.428119 C =10039.112202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.161 4.161 6 C -0.044 4.044 7 C 0.598 3.402 8 O -0.499 6.499 9 N -0.698 5.698 10 C 0.122 3.878 11 H 0.087 0.913 12 C 0.165 3.835 13 N -0.587 5.587 14 C -0.258 4.258 15 H 0.066 0.934 16 C 0.007 3.993 17 N -0.899 5.899 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.141 3.859 23 C -0.125 4.125 24 C -0.092 4.092 25 H 0.069 0.931 26 C -0.146 4.146 27 O 0.113 5.887 28 N -0.395 5.395 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.189 0.811 35 H 0.400 0.600 36 H 0.020 0.980 37 H 0.096 0.904 38 H 0.255 0.745 39 H 0.019 0.981 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 -12.460 10.361 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.184 4.184 6 C -0.111 4.111 7 C 0.380 3.620 8 O -0.373 6.373 9 N -0.348 5.348 10 C 0.017 3.983 11 H 0.106 0.894 12 C 0.038 3.962 13 N -0.310 5.310 14 C -0.387 4.387 15 H 0.084 0.916 16 C -0.192 4.192 17 N -0.543 5.543 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.208 1.208 22 C 0.015 3.985 23 C -0.165 4.165 24 C -0.111 4.111 25 H 0.088 0.912 26 C -0.203 4.203 27 O 0.048 5.952 28 N -0.120 5.120 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.207 0.793 35 H 0.234 0.766 36 H 0.038 0.962 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.204 -12.657 10.199 19.192 hybrid contribution -0.472 0.856 -0.376 1.048 sum -10.676 -11.800 9.823 18.701 Atomic orbital electron populations 1.21798 0.92170 1.03177 1.03734 1.22831 0.95899 0.80622 1.02449 1.86220 1.13070 1.30188 1.89335 1.21825 0.85748 0.90555 1.00880 1.22180 0.90183 0.99246 1.06784 1.24352 0.96945 0.84013 1.05768 1.16452 0.81096 0.86096 0.78402 1.90938 1.84489 1.12610 1.49243 1.45994 1.05231 1.10859 1.72752 1.22194 0.82092 0.91786 1.02192 0.89449 1.21120 0.91157 0.95163 0.88796 1.43933 1.04203 1.17672 1.65143 1.19097 1.21210 0.88332 1.10059 0.91608 1.25049 1.01078 0.97449 0.95643 1.69998 1.32924 1.30249 1.21103 0.86367 0.77752 0.84901 0.77738 1.20917 1.21626 1.20827 1.20978 0.90504 0.96557 0.90468 1.22067 0.95931 0.98477 0.99993 1.21312 0.95477 0.98654 0.95701 0.91215 1.21874 1.00732 1.00968 0.96773 1.84930 1.22781 1.18827 1.68630 1.73965 0.90473 1.22194 1.25357 0.89973 0.91276 0.91342 0.91581 0.91505 0.79326 0.76555 0.96168 0.88608 0.93552 0.96335 0.92529 0.92479 0.92023 0.93129 0.92974 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.51 6.38 37.16 0.24 0.75 16 3 O -0.28 -3.41 10.21 -18.91 -0.19 -3.61 16 4 C 0.21 2.79 8.00 -16.72 -0.13 2.66 16 5 C -0.16 -2.22 10.97 -38.77 -0.43 -2.65 16 6 C -0.04 -0.64 7.29 -36.36 -0.26 -0.91 16 7 C 0.60 10.14 7.79 -12.47 -0.10 10.05 16 8 O -0.50 -10.42 16.57 5.29 0.09 -10.33 16 9 N -0.70 -10.88 4.37 -54.73 -0.24 -11.12 16 10 C 0.12 2.23 2.06 -67.82 -0.14 2.10 16 11 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 12 C 0.16 3.86 4.88 -3.72 -0.02 3.84 16 13 N -0.59 -14.45 2.99 -172.32 -0.52 -14.97 16 14 C -0.26 -7.07 9.58 -15.06 -0.14 -7.22 16 15 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 16 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 17 N -0.90 -26.40 11.20 55.49 0.62 -25.78 16 18 Si 0.90 22.22 29.59 -169.99 -5.03 17.19 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.14 2.82 6.52 -3.71 -0.02 2.80 16 23 C -0.12 -2.01 5.36 -26.61 -0.14 -2.15 16 24 C -0.09 -1.39 2.27 -90.58 -0.21 -1.60 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 C -0.15 -1.80 9.02 37.16 0.34 -1.46 16 27 O 0.11 1.54 11.03 15.49 0.17 1.71 16 28 N -0.39 -5.43 11.50 30.47 0.35 -5.08 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.19 2.35 8.06 -52.49 -0.42 1.93 16 35 H 0.40 5.04 8.13 -40.82 -0.33 4.71 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 2.65 6.06 -51.93 -0.31 2.34 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -31.77 373.10 -6.73 -38.50 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.88 Total: 2.11 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.73 Total: 5.76 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.22 Total: -56.94 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.77 -6.73 -38.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967402331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.882 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds