Wall clock time and date at job start Tue Mar 31 2020 14:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47260 * 2 1 4 4 C 1.35734 * 116.99738 * 180.02562 * 3 2 1 5 5 C 1.41854 * 126.78281 * 180.02562 * 4 3 2 6 6 C 1.36661 * 103.81271 * 180.02562 * 5 4 3 7 7 C 1.47542 * 126.88539 * 179.97438 * 6 5 4 8 8 O 1.21587 * 119.99630 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00563 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00164 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.49444 * 35.00133 * 10 9 7 12 12 C 1.53180 * 109.49699 * 274.93423 * 10 9 7 13 13 N 1.46927 * 108.77714 * 185.41222 * 12 10 9 14 14 C 1.36934 * 120.63562 * 233.58697 * 13 12 10 15 15 H 1.08007 * 120.00017 * 151.82571 * 14 13 12 16 16 C 1.38816 * 120.00063 * 331.83486 * 14 13 12 17 17 N 1.31623 * 119.99470 * 343.07882 * 16 14 13 18 18 Si 1.86795 * 120.00258 * 163.08338 * 16 14 13 19 19 H 1.48505 * 109.47270 * 59.99482 * 18 16 14 20 20 H 1.48496 * 109.47086 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47149 * 300.00002 * 18 16 14 22 22 C 1.46927 * 118.73481 * 53.61063 * 13 12 10 23 23 C 1.53194 * 108.77614 * 306.39055 * 22 13 12 24 24 C 1.53033 * 109.33705 * 54.62027 * 23 22 13 25 25 H 1.09000 * 109.43480 * 58.69276 * 24 23 22 26 26 C 1.53007 * 109.48650 * 178.64489 * 24 23 22 27 27 O 1.34666 * 106.23977 * 359.97438 * 6 5 4 28 28 N 1.20877 * 111.63193 * 359.70628 * 27 6 5 29 29 H 1.09002 * 109.47556 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47367 * 59.99084 * 1 2 3 31 31 H 1.09007 * 109.46902 * 299.99434 * 1 2 3 32 32 H 1.09004 * 109.47367 * 120.00915 * 2 1 3 33 33 H 1.09007 * 109.46902 * 240.00566 * 2 1 3 34 34 H 1.08002 * 128.09603 * 359.97438 * 5 4 3 35 35 H 0.97001 * 119.99688 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.59358 * 305.20147 * 12 10 9 37 37 H 1.09005 * 109.59156 * 65.62635 * 12 10 9 38 38 H 0.96996 * 119.99686 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.59304 * 66.17774 * 22 13 12 40 40 H 1.09003 * 109.58833 * 186.46335 * 22 13 12 41 41 H 1.08995 * 109.49835 * 174.58858 * 23 22 13 42 42 H 1.08998 * 109.49957 * 294.65574 * 23 22 13 43 43 H 1.09007 * 109.46849 * 180.08465 * 26 24 23 44 44 H 1.08997 * 109.47323 * 300.08841 * 26 24 23 45 45 H 1.09003 * 109.46750 * 60.08643 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3520 1.5250 -0.0005 5 6 4.0453 2.7626 -0.0001 6 6 5.3625 2.3986 -0.0016 7 6 6.5304 3.3002 -0.0024 8 8 6.3680 4.5052 -0.0022 9 7 7.7771 2.7883 -0.0033 10 6 8.9367 3.6836 -0.0047 11 1 8.7107 4.5724 0.5846 12 6 9.2642 4.0938 -1.4437 13 7 10.5031 4.8836 -1.4401 14 6 10.5426 6.1225 -2.0219 15 1 11.2338 6.8683 -1.6578 16 6 9.6941 6.4201 -3.0795 17 7 9.0999 5.4488 -3.7397 18 14 9.3956 8.1988 -3.5656 19 1 10.6838 8.8296 -3.9507 20 1 8.4580 8.2469 -4.7161 21 1 8.8085 8.9341 -2.4168 22 6 11.6992 4.3183 -0.8008 23 6 11.3444 3.9056 0.6312 24 6 10.1410 2.9606 0.6028 25 1 10.3814 2.0853 -0.0007 26 6 9.8047 2.5194 2.0287 27 8 5.3812 1.0521 -0.0021 28 7 4.2639 0.5909 0.0046 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5140 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.6294 3.7593 0.0003 35 1 7.9066 1.8270 -0.0030 36 1 9.4009 3.2023 -2.0558 37 1 8.4490 4.6948 -1.8470 38 1 8.5073 5.6566 -4.4789 39 1 12.0345 3.4451 -1.3602 40 1 12.4916 5.0666 -0.7819 41 1 12.1953 3.3975 1.0848 42 1 11.0969 4.7923 1.2147 43 1 8.9484 1.8452 2.0080 44 1 10.6623 2.0045 2.4616 45 1 9.5637 3.3944 2.6324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967402331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:41 Heat of formation + Delta-G solvation = -12.086730 kcal Electronic energy + Delta-G solvation = -27854.059443 eV Core-core repulsion = 23875.307730 eV Total energy + Delta-G solvation = -3978.751714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.14725 -41.14889 -40.12294 -39.21838 -36.18089 -34.87869 -34.57636 -33.20424 -32.75450 -32.15839 -30.51503 -28.96684 -26.21510 -25.61561 -24.58569 -24.36876 -23.16957 -22.60334 -21.77122 -21.18604 -19.90494 -19.14345 -18.73080 -18.06762 -17.41184 -17.11553 -17.02989 -16.77005 -15.99672 -15.79901 -15.55224 -15.27120 -15.22103 -14.92002 -14.73818 -14.48373 -14.10029 -14.06094 -13.56852 -13.54640 -13.25972 -13.03592 -12.99950 -12.68764 -12.55889 -12.41365 -12.34439 -12.18140 -12.14996 -11.89891 -11.66603 -11.60815 -11.21298 -11.18295 -11.05626 -10.52810 -10.48550 -10.21167 -8.66743 -7.87464 -5.33042 -0.42879 0.90261 1.35335 1.43790 1.46865 1.49152 1.53773 1.84934 2.22613 2.51628 2.91184 3.28939 3.55145 3.66745 3.80911 3.88940 3.89490 3.91821 4.03009 4.07043 4.18261 4.25942 4.49242 4.51485 4.59767 4.70291 4.76881 4.77559 4.84698 4.96024 5.01917 5.12916 5.14485 5.18742 5.22352 5.28148 5.37295 5.48967 5.55980 5.64367 5.78082 5.83890 6.26078 6.40641 6.83892 6.95959 7.14737 7.86920 8.36073 9.17316 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.003292 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.097052 B = 8504.428119 C =10039.112202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.289 6.289 4 C 0.208 3.792 5 C -0.158 4.158 6 C -0.050 4.050 7 C 0.602 3.398 8 O -0.544 6.544 9 N -0.685 5.685 10 C 0.139 3.861 11 H 0.063 0.937 12 C 0.175 3.825 13 N -0.608 5.608 14 C -0.263 4.263 15 H 0.068 0.932 16 C -0.049 4.049 17 N -0.930 5.930 18 Si 0.961 3.039 19 H -0.269 1.269 20 H -0.295 1.295 21 H -0.283 1.283 22 C 0.134 3.866 23 C -0.115 4.115 24 C -0.086 4.086 25 H 0.081 0.919 26 C -0.138 4.138 27 O 0.121 5.879 28 N -0.395 5.395 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.198 0.802 35 H 0.418 0.582 36 H 0.003 0.997 37 H 0.047 0.953 38 H 0.247 0.753 39 H 0.021 0.979 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 -14.082 12.122 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.196 6.196 4 C 0.011 3.989 5 C -0.181 4.181 6 C -0.116 4.116 7 C 0.385 3.615 8 O -0.421 6.421 9 N -0.336 5.336 10 C 0.033 3.967 11 H 0.081 0.919 12 C 0.048 3.952 13 N -0.332 5.332 14 C -0.393 4.393 15 H 0.086 0.914 16 C -0.245 4.245 17 N -0.576 5.576 18 Si 0.789 3.211 19 H -0.195 1.195 20 H -0.222 1.222 21 H -0.210 1.210 22 C 0.010 3.990 23 C -0.154 4.154 24 C -0.105 4.105 25 H 0.099 0.901 26 C -0.195 4.195 27 O 0.055 5.945 28 N -0.120 5.120 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.215 0.785 35 H 0.255 0.745 36 H 0.021 0.979 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.179 -14.332 11.990 21.279 hybrid contribution -0.493 1.280 -0.928 1.656 sum -10.672 -13.052 11.063 20.165 Atomic orbital electron populations 1.21834 0.90013 1.04741 1.03745 1.23151 0.97595 0.79195 1.02688 1.86245 1.12078 1.32223 1.89032 1.21859 0.86423 0.90162 1.00429 1.22386 0.90065 0.99993 1.05641 1.23796 0.96153 0.84341 1.07310 1.16642 0.81818 0.85793 0.77255 1.90916 1.85258 1.14706 1.51269 1.45790 1.04315 1.11501 1.71992 1.21716 0.84357 0.92244 0.98380 0.91901 1.20829 0.89514 0.93292 0.91577 1.44214 1.06147 1.17321 1.65470 1.19449 1.20574 0.89782 1.09534 0.91397 1.25776 1.01640 1.00839 0.96242 1.70154 1.33908 1.31826 1.21689 0.85439 0.77837 0.80877 0.76951 1.19482 1.22160 1.20952 1.21195 0.88854 0.96406 0.92584 1.21960 0.97706 0.98808 0.96934 1.21289 0.93162 0.98266 0.97774 0.90051 1.21801 1.02383 1.01144 0.94165 1.84932 1.22838 1.18048 1.68634 1.73942 0.90527 1.22155 1.25398 0.87598 0.91435 0.91145 0.91081 0.91501 0.78467 0.74462 0.97943 0.93423 0.94392 0.96071 0.92600 0.88543 0.92824 0.91908 0.90369 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.79 6.38 71.98 0.46 1.25 16 3 O -0.29 -6.66 10.21 -90.58 -0.92 -7.58 16 4 C 0.21 5.40 8.00 85.78 0.69 6.09 16 5 C -0.16 -4.29 10.97 22.80 0.25 -4.04 16 6 C -0.05 -1.43 7.29 24.36 0.18 -1.25 16 7 C 0.60 20.71 7.79 86.70 0.67 21.38 16 8 O -0.54 -23.63 16.57 -3.99 -0.07 -23.70 16 9 N -0.69 -21.17 4.37 -445.34 -1.94 -23.11 16 10 C 0.14 5.09 2.06 45.07 0.09 5.18 16 11 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 12 C 0.18 8.49 4.88 86.36 0.42 8.91 16 13 N -0.61 -30.54 2.99 -699.09 -2.09 -32.63 16 14 C -0.26 -14.79 9.58 84.03 0.81 -13.98 16 15 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 16 C -0.05 -2.85 4.92 84.86 0.42 -2.44 16 17 N -0.93 -56.92 11.20 21.65 0.24 -56.68 16 18 Si 0.96 46.93 29.59 68.60 2.03 48.96 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 21 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 22 C 0.13 5.27 6.52 86.36 0.56 5.84 16 23 C -0.11 -3.41 5.36 30.67 0.16 -3.24 16 24 C -0.09 -2.39 2.27 -10.77 -0.02 -2.42 16 25 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 26 C -0.14 -2.89 9.02 71.98 0.65 -2.24 16 27 O 0.12 3.15 11.03 65.60 0.72 3.87 16 28 N -0.40 -10.34 11.50 -172.01 -1.98 -12.32 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.20 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.42 9.92 8.13 -92.71 -0.75 9.17 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.05 2.78 6.06 -2.38 -0.01 2.76 16 38 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 41 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 1.18 7.36 -2.38 -0.02 1.16 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -71.96 373.10 2.31 -69.64 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.25 Total: 15.31 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 6.08 Total: 18.24 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -5.77 Total: -124.74 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.27 Total: -27.41 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -71.96 2.31 -69.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967402331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.557 kcal (2) G-P(sol) polarization free energy of solvation -71.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds