Wall clock time and date at job start Tue Mar 31 2020 14:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.46911 * 2 1 4 4 C 1.35735 * 117.00037 * 180.02562 * 3 2 1 5 5 C 1.41853 * 126.79045 * 180.02562 * 4 3 2 6 6 C 1.36659 * 103.81198 * 180.02562 * 5 4 3 7 7 C 1.47546 * 126.87478 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00347 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99634 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99954 * 180.27911 * 9 7 6 11 11 H 1.09009 * 109.49761 * 324.72596 * 10 9 7 12 12 C 1.53192 * 109.50180 * 84.78975 * 10 9 7 13 13 N 1.46999 * 108.73732 * 65.34261 * 12 10 9 14 14 C 1.36934 * 120.61422 * 233.57035 * 13 12 10 15 15 H 1.08007 * 119.99906 * 152.63341 * 14 13 12 16 16 C 1.38815 * 120.00258 * 332.63129 * 14 13 12 17 17 N 1.31621 * 119.99845 * 159.34092 * 16 14 13 18 18 Si 1.86798 * 120.00058 * 339.34851 * 16 14 13 19 19 H 1.48492 * 109.47568 * 92.85383 * 18 16 14 20 20 H 1.48504 * 109.46915 * 212.85501 * 18 16 14 21 21 H 1.48504 * 109.47058 * 332.85389 * 18 16 14 22 22 C 1.46924 * 118.75087 * 53.59791 * 13 12 10 23 23 C 1.53195 * 108.77384 * 306.38505 * 22 13 12 24 24 C 1.53034 * 109.50037 * 204.66041 * 10 9 7 25 25 H 1.09001 * 109.46510 * 181.39173 * 24 10 9 26 26 C 1.53006 * 109.45942 * 61.43091 * 24 10 9 27 27 O 1.34656 * 106.24235 * 0.26120 * 6 5 4 28 28 N 1.20875 * 111.63354 * 359.52449 * 27 6 5 29 29 H 1.09002 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47071 * 300.00114 * 1 2 3 31 31 H 1.09001 * 109.46954 * 60.00087 * 1 2 3 32 32 H 1.08993 * 109.47101 * 240.00055 * 2 1 3 33 33 H 1.09001 * 109.46954 * 119.99912 * 2 1 3 34 34 H 1.08001 * 128.09151 * 0.05147 * 5 4 3 35 35 H 0.97002 * 119.99868 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.58950 * 185.10617 * 12 10 9 37 37 H 1.09000 * 109.58227 * 305.53266 * 12 10 9 38 38 H 0.96995 * 120.00041 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.58517 * 186.60472 * 22 13 12 40 40 H 1.09001 * 109.70904 * 66.24549 * 22 13 12 41 41 H 1.08998 * 109.50102 * 294.68773 * 23 22 13 42 42 H 1.09000 * 109.49764 * 174.58900 * 23 22 13 43 43 H 1.09003 * 109.46913 * 60.00192 * 26 24 10 44 44 H 1.08997 * 109.47176 * 180.02562 * 26 24 10 45 45 H 1.09001 * 109.47379 * 300.00333 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0453 2.7627 -0.0001 6 6 5.3625 2.3987 -0.0016 7 6 6.5302 3.3005 -0.0024 8 8 6.3679 4.5054 -0.0013 9 7 7.7771 2.7885 -0.0033 10 6 8.9365 3.6839 0.0021 11 1 8.7125 4.5729 -0.5876 12 6 9.2595 4.0937 1.4424 13 7 9.6847 2.9008 2.1887 14 6 9.0736 2.5601 3.3658 15 1 9.0458 1.5273 3.6807 16 6 8.4900 3.5421 4.1545 17 7 7.5746 3.2154 5.0421 18 14 9.0036 5.3270 3.9561 19 1 8.0970 5.9987 2.9908 20 1 8.9241 6.0140 5.2703 21 1 10.3983 5.3874 3.4495 22 6 10.7780 2.0814 1.6482 23 6 10.4375 1.6948 0.2055 24 6 10.1428 2.9612 -0.6017 25 1 11.0113 3.6192 -0.5748 26 6 9.8361 2.5814 -2.0518 27 8 5.3812 1.0523 -0.0086 28 7 4.2639 0.5911 -0.0020 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6294 3.7594 0.0014 35 1 7.9066 1.8272 -0.0030 36 1 10.0634 4.8298 1.4413 37 1 8.3714 4.5201 1.9088 38 1 7.1665 3.9016 5.5929 39 1 10.8916 1.1803 2.2508 40 1 11.7070 2.6513 1.6642 41 1 9.5606 1.0473 0.1996 42 1 11.2820 1.1683 -0.2391 43 1 9.6274 3.4834 -2.6272 44 1 10.6950 2.0663 -2.4819 45 1 8.9673 1.9238 -2.0793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967402332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:45 Heat of formation + Delta-G solvation = 17.948963 kcal Electronic energy + Delta-G solvation = -28664.548636 eV Core-core repulsion = 24687.099368 eV Total energy + Delta-G solvation = -3977.449268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.86429 -39.89789 -39.04930 -37.86926 -34.39913 -33.53209 -33.06137 -31.88566 -31.38450 -31.23463 -29.66331 -27.63728 -24.78199 -23.92055 -23.47454 -23.20468 -22.37967 -21.27154 -20.76752 -19.07234 -18.93492 -17.86677 -16.90231 -16.84581 -16.06253 -16.05146 -15.50410 -15.35915 -14.76441 -14.47201 -14.34684 -13.88146 -13.68183 -13.49920 -13.41309 -13.35909 -13.23322 -12.93061 -12.76820 -12.18855 -12.07637 -12.03086 -11.71172 -11.53013 -11.32971 -11.31367 -11.15822 -10.63848 -10.56632 -10.29603 -10.10697 -9.91340 -9.79952 -9.73649 -9.43499 -9.30633 -8.84326 -8.49239 -6.96832 -5.93591 -3.29884 0.92047 2.16282 2.55868 2.74805 3.28602 3.40225 3.50948 3.52941 3.59718 4.13273 4.55972 4.67518 4.68203 4.83165 4.89870 4.93512 5.02137 5.07061 5.09469 5.16230 5.24247 5.41100 5.42932 5.51348 5.69253 5.70578 5.70995 5.77803 5.83060 5.93111 6.03792 6.04634 6.16372 6.27411 6.32671 6.46931 6.60018 6.62687 6.76155 6.84232 6.90965 7.64429 7.95810 8.12284 8.32445 8.33687 8.93574 9.73169 10.09079 11.21981 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.004250 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.235028 B = 6586.081661 C = 7669.523022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.206 3.794 5 C -0.162 4.162 6 C -0.040 4.040 7 C 0.605 3.395 8 O -0.517 6.517 9 N -0.680 5.680 10 C 0.133 3.867 11 H 0.086 0.914 12 C 0.111 3.889 13 N -0.601 5.601 14 C -0.261 4.261 15 H 0.085 0.915 16 C 0.028 3.972 17 N -0.905 5.905 18 Si 0.874 3.126 19 H -0.283 1.283 20 H -0.303 1.303 21 H -0.270 1.270 22 C 0.145 3.855 23 C -0.133 4.133 24 C -0.094 4.094 25 H 0.082 0.918 26 C -0.146 4.146 27 O 0.118 5.882 28 N -0.392 5.392 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.188 0.812 35 H 0.406 0.594 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.024 0.976 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -5.157 -14.997 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.189 6.189 4 C 0.009 3.991 5 C -0.185 4.185 6 C -0.106 4.106 7 C 0.387 3.613 8 O -0.393 6.393 9 N -0.330 5.330 10 C 0.027 3.973 11 H 0.104 0.896 12 C -0.015 4.015 13 N -0.325 5.325 14 C -0.389 4.389 15 H 0.103 0.897 16 C -0.171 4.171 17 N -0.548 5.548 18 Si 0.704 3.296 19 H -0.211 1.211 20 H -0.232 1.232 21 H -0.195 1.195 22 C 0.019 3.981 23 C -0.172 4.172 24 C -0.113 4.113 25 H 0.100 0.900 26 C -0.203 4.203 27 O 0.052 5.948 28 N -0.117 5.117 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.205 0.795 35 H 0.243 0.757 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.152 -5.383 -14.831 16.598 hybrid contribution -0.032 1.147 0.202 1.165 sum -5.184 -4.237 -14.629 16.088 Atomic orbital electron populations 1.21793 0.92257 1.03111 1.03651 1.22822 0.95809 0.80711 1.02492 1.86201 1.13122 1.30123 1.89438 1.21788 0.85709 0.90547 1.01067 1.22109 0.90152 0.99151 1.07067 1.24142 0.96708 0.84139 1.05658 1.16389 0.81198 0.85980 0.77694 1.90851 1.84880 1.12867 1.50751 1.45710 1.04385 1.11158 1.71739 1.21660 0.83973 0.92559 0.99089 0.89597 1.21832 0.99183 0.90171 0.90363 1.44322 1.37259 1.27734 1.23183 1.18846 1.30436 0.94008 0.95638 0.89736 1.25249 0.97886 0.97626 0.96369 1.69830 1.25833 1.33477 1.25647 0.87063 0.79581 0.87000 0.75914 1.21068 1.23171 1.19545 1.20962 0.90067 0.95219 0.91807 1.22107 1.01015 0.96353 0.97721 1.21321 0.97386 0.98126 0.94445 0.89952 1.21860 1.01380 1.01284 0.95822 1.84938 1.22737 1.18727 1.68357 1.73961 0.90447 1.22195 1.25049 0.90026 0.91272 0.91441 0.91650 0.91415 0.79491 0.75713 0.94609 0.90001 0.92813 0.91745 0.95846 0.92101 0.92076 0.92889 0.92729 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.61 6.38 37.16 0.24 0.84 16 3 O -0.28 -3.91 10.21 -18.91 -0.19 -4.11 16 4 C 0.21 3.21 8.00 -16.72 -0.13 3.08 16 5 C -0.16 -2.55 10.97 -38.77 -0.43 -2.98 16 6 C -0.04 -0.67 7.29 -36.36 -0.26 -0.94 16 7 C 0.61 11.06 7.78 -12.46 -0.10 10.97 16 8 O -0.52 -10.78 16.58 5.30 0.09 -10.69 16 9 N -0.68 -11.39 4.25 -54.73 -0.23 -11.62 16 10 C 0.13 2.23 2.23 -67.82 -0.15 2.08 16 11 H 0.09 1.41 7.58 -51.92 -0.39 1.02 16 12 C 0.11 2.36 3.80 -3.67 -0.01 2.35 16 13 N -0.60 -13.43 2.69 -172.26 -0.46 -13.89 16 14 C -0.26 -7.08 10.04 -15.06 -0.15 -7.23 16 15 H 0.09 2.46 8.06 -52.48 -0.42 2.03 16 16 C 0.03 0.81 5.23 -17.43 -0.09 0.72 16 17 N -0.91 -27.93 13.97 55.49 0.78 -27.16 16 18 Si 0.87 22.70 24.34 -169.99 -4.14 18.56 16 19 H -0.28 -7.38 6.62 56.52 0.37 -7.01 16 20 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 21 H -0.27 -6.76 6.64 56.52 0.38 -6.39 16 22 C 0.15 2.59 6.52 -3.71 -0.02 2.57 16 23 C -0.13 -1.84 5.20 -26.61 -0.14 -1.98 16 24 C -0.09 -1.25 2.48 -90.58 -0.22 -1.48 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 C -0.15 -1.59 9.05 37.16 0.34 -1.26 16 27 O 0.12 1.93 11.03 15.51 0.17 2.10 16 28 N -0.39 -6.35 11.50 30.47 0.35 -6.00 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.19 2.62 8.06 -52.49 -0.42 2.20 16 35 H 0.41 6.26 6.46 -40.82 -0.26 6.00 16 36 H 0.04 0.75 7.08 -51.93 -0.37 0.38 16 37 H 0.08 2.04 4.50 -51.93 -0.23 1.81 16 38 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.86 6.40 -51.93 -0.33 0.53 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -32.55 363.51 -5.58 -38.13 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.66 Total: 3.24 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -0.76 Total: 5.96 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.43 Total: -58.67 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.07 Total: -12.70 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.14 Total: 18.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.55 -5.58 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967402332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.078 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds