Wall clock time and date at job start Tue Mar 31 2020 14:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.46911 * 2 1 4 4 C 1.35735 * 117.00037 * 180.02562 * 3 2 1 5 5 C 1.41853 * 126.79045 * 180.02562 * 4 3 2 6 6 C 1.36659 * 103.81198 * 180.02562 * 5 4 3 7 7 C 1.47546 * 126.87478 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00347 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99634 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99954 * 180.27911 * 9 7 6 11 11 H 1.09009 * 109.49761 * 324.72596 * 10 9 7 12 12 C 1.53192 * 109.50180 * 84.78975 * 10 9 7 13 13 N 1.46999 * 108.73732 * 65.34261 * 12 10 9 14 14 C 1.36934 * 120.61422 * 233.57035 * 13 12 10 15 15 H 1.08007 * 119.99906 * 152.63341 * 14 13 12 16 16 C 1.38815 * 120.00258 * 332.63129 * 14 13 12 17 17 N 1.31621 * 119.99845 * 159.34092 * 16 14 13 18 18 Si 1.86798 * 120.00058 * 339.34851 * 16 14 13 19 19 H 1.48492 * 109.47568 * 92.85383 * 18 16 14 20 20 H 1.48504 * 109.46915 * 212.85501 * 18 16 14 21 21 H 1.48504 * 109.47058 * 332.85389 * 18 16 14 22 22 C 1.46924 * 118.75087 * 53.59791 * 13 12 10 23 23 C 1.53195 * 108.77384 * 306.38505 * 22 13 12 24 24 C 1.53034 * 109.50037 * 204.66041 * 10 9 7 25 25 H 1.09001 * 109.46510 * 181.39173 * 24 10 9 26 26 C 1.53006 * 109.45942 * 61.43091 * 24 10 9 27 27 O 1.34656 * 106.24235 * 0.26120 * 6 5 4 28 28 N 1.20875 * 111.63354 * 359.52449 * 27 6 5 29 29 H 1.09002 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47071 * 300.00114 * 1 2 3 31 31 H 1.09001 * 109.46954 * 60.00087 * 1 2 3 32 32 H 1.08993 * 109.47101 * 240.00055 * 2 1 3 33 33 H 1.09001 * 109.46954 * 119.99912 * 2 1 3 34 34 H 1.08001 * 128.09151 * 0.05147 * 5 4 3 35 35 H 0.97002 * 119.99868 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.58950 * 185.10617 * 12 10 9 37 37 H 1.09000 * 109.58227 * 305.53266 * 12 10 9 38 38 H 0.96995 * 120.00041 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.58517 * 186.60472 * 22 13 12 40 40 H 1.09001 * 109.70904 * 66.24549 * 22 13 12 41 41 H 1.08998 * 109.50102 * 294.68773 * 23 22 13 42 42 H 1.09000 * 109.49764 * 174.58900 * 23 22 13 43 43 H 1.09003 * 109.46913 * 60.00192 * 26 24 10 44 44 H 1.08997 * 109.47176 * 180.02562 * 26 24 10 45 45 H 1.09001 * 109.47379 * 300.00333 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0453 2.7627 -0.0001 6 6 5.3625 2.3987 -0.0016 7 6 6.5302 3.3005 -0.0024 8 8 6.3679 4.5054 -0.0013 9 7 7.7771 2.7885 -0.0033 10 6 8.9365 3.6839 0.0021 11 1 8.7125 4.5729 -0.5876 12 6 9.2595 4.0937 1.4424 13 7 9.6847 2.9008 2.1887 14 6 9.0736 2.5601 3.3658 15 1 9.0458 1.5273 3.6807 16 6 8.4900 3.5421 4.1545 17 7 7.5746 3.2154 5.0421 18 14 9.0036 5.3270 3.9561 19 1 8.0970 5.9987 2.9908 20 1 8.9241 6.0140 5.2703 21 1 10.3983 5.3874 3.4495 22 6 10.7780 2.0814 1.6482 23 6 10.4375 1.6948 0.2055 24 6 10.1428 2.9612 -0.6017 25 1 11.0113 3.6192 -0.5748 26 6 9.8361 2.5814 -2.0518 27 8 5.3812 1.0523 -0.0086 28 7 4.2639 0.5911 -0.0020 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6294 3.7594 0.0014 35 1 7.9066 1.8272 -0.0030 36 1 10.0634 4.8298 1.4413 37 1 8.3714 4.5201 1.9088 38 1 7.1665 3.9016 5.5929 39 1 10.8916 1.1803 2.2508 40 1 11.7070 2.6513 1.6642 41 1 9.5606 1.0473 0.1996 42 1 11.2820 1.1683 -0.2391 43 1 9.6274 3.4834 -2.6272 44 1 10.6950 2.0663 -2.4819 45 1 8.9673 1.9238 -2.0793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967402332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:44 Heat of formation + Delta-G solvation = -6.277180 kcal Electronic energy + Delta-G solvation = -28665.599160 eV Core-core repulsion = 24687.099368 eV Total energy + Delta-G solvation = -3978.499793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.13160 -41.31788 -40.12309 -39.33171 -36.07829 -34.74151 -34.45157 -33.33344 -33.07101 -32.16441 -31.08150 -29.09970 -26.14830 -25.49319 -24.61978 -24.45531 -23.61973 -22.81159 -21.94685 -20.42311 -20.32406 -19.12617 -18.76768 -18.06269 -17.47270 -17.10052 -17.04739 -16.91167 -16.14439 -15.98196 -15.62028 -15.22732 -15.10428 -14.96368 -14.93187 -14.70758 -14.35712 -14.09949 -13.79126 -13.62289 -13.55920 -13.14872 -12.99874 -12.86166 -12.52594 -12.40175 -12.37634 -12.16978 -12.15624 -11.82104 -11.65879 -11.51134 -11.30058 -11.11356 -11.04685 -10.74265 -10.48885 -10.14953 -8.86480 -8.16089 -5.44943 -0.41260 0.91055 1.31306 1.35994 1.40070 1.44435 1.46672 1.88322 2.28627 2.41850 2.92353 3.06908 3.37630 3.56588 3.68907 3.84061 3.90106 3.90817 3.96106 4.04859 4.07350 4.25231 4.34884 4.49748 4.52667 4.66285 4.67105 4.75523 4.77179 4.84272 4.88589 4.93326 5.05791 5.13526 5.15694 5.22067 5.24952 5.40070 5.47159 5.59123 5.82954 5.89300 6.14032 6.27271 6.83061 6.93445 6.94971 7.65559 8.05379 9.03472 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.004250 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.235028 B = 6586.081661 C = 7669.523022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.287 6.287 4 C 0.207 3.793 5 C -0.161 4.161 6 C -0.053 4.053 7 C 0.603 3.397 8 O -0.548 6.548 9 N -0.672 5.672 10 C 0.137 3.863 11 H 0.092 0.908 12 C 0.107 3.893 13 N -0.612 5.612 14 C -0.232 4.232 15 H 0.057 0.943 16 C -0.031 4.031 17 N -0.956 5.956 18 Si 0.931 3.069 19 H -0.290 1.290 20 H -0.315 1.315 21 H -0.252 1.252 22 C 0.138 3.862 23 C -0.123 4.123 24 C -0.086 4.086 25 H 0.097 0.903 26 C -0.139 4.139 27 O 0.116 5.884 28 N -0.398 5.398 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.201 0.799 35 H 0.413 0.587 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.256 0.744 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.098 0.902 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 -5.730 -17.667 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.194 6.194 4 C 0.010 3.990 5 C -0.183 4.183 6 C -0.119 4.119 7 C 0.386 3.614 8 O -0.427 6.427 9 N -0.322 5.322 10 C 0.031 3.969 11 H 0.110 0.890 12 C -0.019 4.019 13 N -0.337 5.337 14 C -0.362 4.362 15 H 0.074 0.926 16 C -0.226 4.226 17 N -0.603 5.603 18 Si 0.762 3.238 19 H -0.218 1.218 20 H -0.244 1.244 21 H -0.176 1.176 22 C 0.014 3.986 23 C -0.162 4.162 24 C -0.104 4.104 25 H 0.115 0.885 26 C -0.196 4.196 27 O 0.051 5.949 28 N -0.124 5.124 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.218 0.782 35 H 0.251 0.749 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.074 -5.985 -17.559 18.993 hybrid contribution -0.370 1.196 0.997 1.600 sum -4.444 -4.789 -16.561 17.803 Atomic orbital electron populations 1.21829 0.89738 1.04781 1.03803 1.23155 0.97769 0.79255 1.02547 1.86230 1.11955 1.32173 1.89091 1.21894 0.86462 0.90253 1.00378 1.22383 0.89957 0.99983 1.05999 1.23976 0.96673 0.84378 1.06864 1.16564 0.81882 0.85776 0.77153 1.90826 1.85424 1.14131 1.52292 1.45722 1.04088 1.11596 1.70829 1.21644 0.85414 0.93574 0.96264 0.89011 1.21811 0.97691 0.89801 0.92631 1.44425 1.38617 1.28586 1.22044 1.18807 1.28324 0.92549 0.96549 0.92558 1.25784 0.98757 1.00991 0.97058 1.69957 1.28189 1.34218 1.27890 0.86137 0.79833 0.82987 0.74851 1.21805 1.24449 1.17612 1.21213 0.89082 0.94305 0.94034 1.22018 1.02330 0.96834 0.94985 1.21323 0.95890 0.97581 0.95652 0.88484 1.21795 1.02314 1.01747 0.93782 1.84923 1.22926 1.18404 1.68665 1.73930 0.90534 1.22395 1.25492 0.87559 0.91526 0.90857 0.90958 0.92003 0.78170 0.74920 0.93753 0.94007 0.93458 0.92522 0.94339 0.92511 0.88398 0.92392 0.90410 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.05 0.96 6.38 71.98 0.46 1.42 16 3 O -0.29 -7.78 10.21 -90.59 -0.92 -8.70 16 4 C 0.21 6.39 8.00 85.78 0.69 7.07 16 5 C -0.16 -5.04 10.97 22.79 0.25 -4.79 16 6 C -0.05 -1.78 7.29 24.36 0.18 -1.60 16 7 C 0.60 22.04 7.78 86.70 0.67 22.72 16 8 O -0.55 -23.03 16.58 -3.95 -0.07 -23.09 16 9 N -0.67 -21.89 4.25 -445.34 -1.89 -23.78 16 10 C 0.14 4.32 2.23 45.07 0.10 4.42 16 11 H 0.09 2.85 7.58 -2.38 -0.02 2.83 16 12 C 0.11 4.42 3.80 86.35 0.33 4.75 16 13 N -0.61 -26.80 2.69 -698.90 -1.88 -28.67 16 14 C -0.23 -12.80 10.04 84.03 0.84 -11.95 16 15 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 16 C -0.03 -1.85 5.23 84.86 0.44 -1.41 16 17 N -0.96 -61.31 13.97 21.65 0.30 -61.01 16 18 Si 0.93 48.24 24.34 68.60 1.67 49.91 16 19 H -0.29 -15.19 6.62 99.48 0.66 -14.53 16 20 H -0.32 -16.71 7.11 99.48 0.71 -16.01 16 21 H -0.25 -12.07 6.64 99.48 0.66 -11.41 16 22 C 0.14 4.59 6.52 86.36 0.56 5.15 16 23 C -0.12 -2.95 5.20 30.67 0.16 -2.79 16 24 C -0.09 -1.96 2.48 -10.77 -0.03 -1.98 16 25 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 26 C -0.14 -2.43 9.05 71.98 0.65 -1.78 16 27 O 0.12 3.77 11.03 65.70 0.72 4.49 16 28 N -0.40 -12.75 11.50 -172.01 -1.98 -14.73 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.20 5.58 8.06 -2.91 -0.02 5.55 16 35 H 0.41 12.22 6.46 -92.71 -0.60 11.62 16 36 H 0.04 1.76 7.08 -2.39 -0.02 1.75 16 37 H 0.04 2.09 4.50 -2.39 -0.01 2.08 16 38 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 39 H 0.06 1.96 7.93 -2.39 -0.02 1.94 16 40 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.43 6.40 -2.39 -0.02 1.42 16 42 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 0.95 7.54 -2.39 -0.02 0.93 16 Total: -1.00 -72.93 363.51 2.32 -70.60 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.32 Total: 16.99 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 6.05 Total: 18.00 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -5.45 Total: -128.20 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.27 Total: -27.30 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.67 Total: 49.91 kcal Total: -72.93 2.32 -70.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967402332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.326 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds