Wall clock time and date at job start Tue Mar 31 2020 14:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42906 * 113.99925 * 2 1 4 4 C 1.50696 * 109.47007 * 179.97438 * 3 2 1 5 5 C 1.35319 * 126.66739 * 89.99802 * 4 3 2 6 6 C 1.42268 * 103.92318 * 179.97438 * 5 4 3 7 7 C 1.48334 * 126.93838 * 180.02562 * 6 5 4 8 8 O 1.21495 * 119.99974 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00003 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99792 * 180.27531 * 9 7 6 11 11 H 1.08997 * 109.49432 * 324.65903 * 10 9 7 12 12 C 1.53195 * 109.49655 * 84.72566 * 10 9 7 13 13 N 1.46926 * 108.77340 * 174.58538 * 12 10 9 14 14 C 1.36943 * 120.63047 * 126.36553 * 13 12 10 15 15 H 1.07992 * 119.99926 * 207.68622 * 14 13 12 16 16 C 1.38811 * 119.99821 * 27.69176 * 14 13 12 17 17 N 1.31621 * 120.00013 * 17.36060 * 16 14 13 18 18 Si 1.86800 * 119.99855 * 197.35928 * 16 14 13 19 19 H 1.48506 * 109.47132 * 90.00038 * 18 16 14 20 20 H 1.48496 * 109.46931 * 209.99624 * 18 16 14 21 21 H 1.48492 * 109.47299 * 329.99863 * 18 16 14 22 22 C 1.46931 * 118.73931 * 306.39259 * 13 12 10 23 23 C 1.53190 * 108.77501 * 53.60746 * 22 13 12 24 24 C 1.53038 * 109.31448 * 305.36543 * 23 22 13 25 25 H 1.09009 * 109.45904 * 301.35028 * 24 23 22 26 26 C 1.52999 * 109.46199 * 181.38707 * 24 23 22 27 27 N 1.30989 * 106.12514 * 0.25815 * 6 5 4 28 28 O 1.20905 * 111.43346 * 359.54157 * 27 6 5 29 29 H 1.09003 * 109.47004 * 59.99985 * 1 2 3 30 30 H 1.08994 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46794 * 300.00548 * 1 2 3 32 32 H 1.09004 * 109.46860 * 60.00212 * 3 2 1 33 33 H 1.08997 * 109.46964 * 300.00132 * 3 2 1 34 34 H 1.07999 * 128.03448 * 0.02562 * 5 4 3 35 35 H 0.96996 * 120.00016 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.58300 * 294.37039 * 12 10 9 37 37 H 1.08996 * 109.58837 * 54.65370 * 12 10 9 38 38 H 0.97005 * 119.99705 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.58310 * 173.39415 * 22 13 12 40 40 H 1.08994 * 109.58208 * 293.81732 * 22 13 12 41 41 H 1.08996 * 109.49752 * 65.31714 * 23 22 13 42 42 H 1.09001 * 109.49378 * 185.38360 * 23 22 13 43 43 H 1.08997 * 109.46755 * 299.93203 * 26 24 23 44 44 H 1.08998 * 109.47038 * 59.93212 * 26 24 23 45 45 H 1.09002 * 109.47182 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.3186 1.1225 -1.0844 6 6 5.6263 1.0196 -0.5338 7 6 6.9032 0.9191 -1.2821 8 8 6.8969 0.9191 -2.4970 9 7 8.0703 0.8278 -0.6142 10 6 9.3318 0.7347 -1.3532 11 1 9.1785 0.1537 -2.2626 12 6 9.8144 2.1415 -1.7203 13 7 11.1405 2.0386 -2.3444 14 6 11.3807 2.6014 -3.5695 15 1 12.1384 2.1842 -4.2161 16 6 10.6504 3.7081 -3.9801 17 7 9.9857 4.4226 -3.0968 18 14 10.6109 4.1834 -5.7862 19 1 9.4758 3.4971 -6.4540 20 1 10.4408 5.6536 -5.9074 21 1 11.8845 3.7775 -6.4328 22 6 12.2040 1.3200 -1.6292 23 6 11.6946 -0.0776 -1.2631 24 6 10.3858 0.0498 -0.4802 25 1 10.5559 0.6444 0.4174 26 6 9.8919 -1.3428 -0.0828 27 7 5.4749 1.0264 0.7672 28 8 4.3100 1.1241 1.0759 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 4.0349 1.1451 -2.1263 35 1 8.0753 0.8282 0.3558 36 1 9.1148 2.5963 -2.4217 37 1 9.8782 2.7525 -0.8200 38 1 9.4750 5.1958 -3.3838 39 1 13.0811 1.2328 -2.2704 40 1 12.4652 1.8633 -0.7211 41 1 11.5197 -0.6510 -2.1733 42 1 12.4380 -0.5865 -0.6495 43 1 9.7211 -1.9374 -0.9802 44 1 10.6425 -1.8307 0.5389 45 1 8.9599 -1.2522 0.4752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968395428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:41 Heat of formation + Delta-G solvation = 4.741994 kcal Electronic energy + Delta-G solvation = -27782.975976 eV Core-core repulsion = 23804.954010 eV Total energy + Delta-G solvation = -3978.021965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.17018 -39.57861 -38.36350 -37.61397 -34.40142 -34.06993 -33.27164 -32.67341 -30.95947 -28.99006 -28.10741 -27.37544 -25.99072 -24.85396 -23.96421 -22.82811 -21.87069 -21.00927 -19.91436 -19.28961 -18.02833 -17.94551 -16.81350 -16.69867 -16.64183 -16.25412 -15.64864 -15.22768 -14.90512 -14.34919 -14.11555 -13.80501 -13.72811 -13.53759 -13.36183 -13.26310 -13.01874 -12.61974 -12.41229 -12.03149 -11.95523 -11.71040 -11.62220 -11.57508 -10.88767 -10.73283 -10.69484 -10.44308 -10.43176 -10.23655 -10.17050 -10.08514 -9.91505 -9.78614 -9.66438 -9.49250 -8.59801 -8.41723 -6.65693 -5.74507 -3.17825 1.00478 1.55192 2.62995 3.18427 3.42471 3.44777 3.50839 3.51291 3.60705 3.98696 4.35379 4.55383 4.61277 4.79654 4.88561 4.93328 4.97187 5.15744 5.24799 5.25920 5.27696 5.31698 5.40420 5.53457 5.60419 5.75127 5.92042 6.02289 6.03542 6.11779 6.25055 6.38545 6.46815 6.50993 6.55093 6.72321 6.75027 6.87722 6.97642 7.27130 7.71576 7.71984 7.84758 7.97491 8.43736 8.49715 9.23548 9.87711 10.42539 11.33506 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.003292 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.639244 B = 8504.525403 C = 9998.626753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.147 3.853 4 C -0.047 4.047 5 C -0.152 4.152 6 C -0.017 4.017 7 C 0.592 3.408 8 O -0.513 6.513 9 N -0.700 5.700 10 C 0.123 3.877 11 H 0.085 0.915 12 C 0.166 3.834 13 N -0.587 5.587 14 C -0.256 4.256 15 H 0.067 0.933 16 C 0.006 3.994 17 N -0.899 5.899 18 Si 0.903 3.097 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.142 3.858 23 C -0.125 4.125 24 C -0.092 4.092 25 H 0.068 0.932 26 C -0.145 4.145 27 N -0.326 5.326 28 O 0.128 5.872 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.183 0.817 35 H 0.398 0.602 36 H 0.096 0.904 37 H 0.018 0.982 38 H 0.253 0.747 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.805 -8.658 9.891 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.069 3.931 4 C -0.110 4.110 5 C -0.174 4.174 6 C -0.177 4.177 7 C 0.374 3.626 8 O -0.386 6.386 9 N -0.350 5.350 10 C 0.018 3.982 11 H 0.103 0.897 12 C 0.038 3.962 13 N -0.310 5.310 14 C -0.385 4.385 15 H 0.085 0.915 16 C -0.193 4.193 17 N -0.543 5.543 18 Si 0.732 3.268 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.015 3.985 23 C -0.164 4.164 24 C -0.111 4.111 25 H 0.086 0.914 26 C -0.202 4.202 27 N -0.026 5.026 28 O 0.050 5.950 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.200 0.800 35 H 0.233 0.767 36 H 0.114 0.886 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.822 -8.740 9.925 19.864 hybrid contribution -0.692 0.593 -1.085 1.417 sum -15.514 -8.147 8.839 19.626 Atomic orbital electron populations 1.22818 0.79791 1.03422 1.00449 1.87984 1.20470 1.26416 1.95566 1.20631 0.83135 0.86070 1.03217 1.23852 0.94939 1.06325 0.85864 1.22521 0.89887 1.03437 1.01560 1.23749 0.97287 1.06744 0.89888 1.16805 0.81436 0.77826 0.86495 1.90850 1.86192 1.49310 1.12259 1.45941 1.06004 1.72845 1.10255 1.22128 0.80229 1.01640 0.94166 0.89662 1.21103 0.88203 0.89451 0.97396 1.43957 1.04875 1.62765 1.19420 1.19161 1.20487 1.07195 0.91690 0.91503 1.25043 1.00947 0.95451 0.97902 1.70025 1.34896 1.17447 1.31930 0.86287 0.78041 0.77204 0.85227 1.21242 1.21796 1.20408 1.20976 0.91961 0.90187 0.95353 1.22069 0.95199 0.99903 0.99277 1.21308 0.95697 0.95637 0.98491 0.91367 1.21859 1.00371 0.96992 1.01027 1.74166 0.97098 1.15481 1.15858 1.84763 1.11499 1.65466 1.33226 0.93500 0.89096 0.93532 0.90392 0.89270 0.79965 0.76746 0.88623 0.96373 0.93667 0.92509 0.96344 0.92034 0.92490 0.92881 0.92979 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.41 10.69 -35.23 -0.38 -3.79 16 3 C 0.15 1.09 6.50 36.00 0.23 1.32 16 4 C -0.05 -0.52 7.10 -35.35 -0.25 -0.77 16 5 C -0.15 -2.03 10.92 -39.07 -0.43 -2.46 16 6 C -0.02 -0.28 7.19 -82.52 -0.59 -0.87 16 7 C 0.59 11.38 7.81 -12.10 -0.09 11.28 16 8 O -0.51 -11.72 16.62 5.37 0.09 -11.63 16 9 N -0.70 -12.58 4.37 -54.48 -0.24 -12.81 16 10 C 0.12 2.47 2.06 -67.81 -0.14 2.33 16 11 H 0.09 1.92 7.58 -51.93 -0.39 1.52 16 12 C 0.17 4.11 4.88 -3.71 -0.02 4.10 16 13 N -0.59 -15.06 3.00 -172.32 -0.52 -15.58 16 14 C -0.26 -7.23 9.59 -15.06 -0.14 -7.37 16 15 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 16 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 17 N -0.90 -27.06 11.19 55.49 0.62 -26.44 16 18 Si 0.90 22.63 29.59 -169.99 -5.03 17.60 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.14 2.96 6.52 -3.71 -0.02 2.94 16 23 C -0.12 -2.14 5.36 -26.61 -0.14 -2.28 16 24 C -0.09 -1.54 2.27 -90.58 -0.21 -1.74 16 25 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 26 C -0.15 -2.02 9.02 37.16 0.34 -1.68 16 27 N -0.33 -4.84 11.84 33.29 0.39 -4.45 16 28 O 0.13 1.64 11.18 17.25 0.19 1.83 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.18 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.40 6.25 8.06 -40.82 -0.33 5.92 16 36 H 0.10 2.78 6.04 -51.93 -0.31 2.47 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.66 7.35 -51.93 -0.38 0.27 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -34.05 373.85 -6.55 -40.60 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.88 Total: 2.90 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.44 Total: 6.14 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.26 Total: -59.28 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.09 Total: -13.59 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.05 -6.55 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968395428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.343 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds