Wall clock time and date at job start Tue Mar 31 2020 14:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99575 * 2 1 4 4 C 1.50702 * 109.47006 * 179.97438 * 3 2 1 5 5 C 1.35319 * 126.66555 * 89.99449 * 4 3 2 6 6 C 1.42273 * 103.92023 * 180.02562 * 5 4 3 7 7 C 1.48334 * 126.93617 * 180.02562 * 6 5 4 8 8 O 1.21496 * 120.00166 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99890 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00095 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.50023 * 34.93145 * 10 9 7 12 12 C 1.53202 * 109.49750 * 274.83910 * 10 9 7 13 13 N 1.46924 * 108.76956 * 294.68217 * 12 10 9 14 14 C 1.36939 * 120.62951 * 126.37510 * 13 12 10 15 15 H 1.08003 * 119.99832 * 207.67880 * 14 13 12 16 16 C 1.38815 * 120.00268 * 27.67218 * 14 13 12 17 17 N 1.31621 * 119.99487 * 17.38120 * 16 14 13 18 18 Si 1.86799 * 119.99959 * 197.37556 * 16 14 13 19 19 H 1.48490 * 109.47306 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46904 * 120.00434 * 18 16 14 21 21 H 1.48505 * 109.47019 * 239.99816 * 18 16 14 22 22 C 1.46928 * 118.74260 * 306.38632 * 13 12 10 23 23 C 1.53198 * 108.77296 * 53.61405 * 22 13 12 24 24 C 1.53039 * 109.31029 * 305.36530 * 23 22 13 25 25 H 1.08993 * 109.44943 * 301.34990 * 24 23 22 26 26 C 1.53002 * 109.46015 * 181.38202 * 24 23 22 27 27 N 1.30977 * 106.12507 * 0.26141 * 6 5 4 28 28 O 1.20911 * 111.43778 * 359.53708 * 27 6 5 29 29 H 1.09012 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47375 * 300.00214 * 1 2 3 31 31 H 1.09002 * 109.47244 * 60.00544 * 1 2 3 32 32 H 1.08994 * 109.47794 * 59.99971 * 3 2 1 33 33 H 1.09004 * 109.47147 * 299.99281 * 3 2 1 34 34 H 1.08004 * 128.03792 * 0.02562 * 5 4 3 35 35 H 0.97002 * 120.00196 * 359.97438 * 9 7 6 36 36 H 1.08994 * 109.58596 * 54.46695 * 12 10 9 37 37 H 1.08997 * 109.58773 * 174.89948 * 12 10 9 38 38 H 0.96997 * 119.99492 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.58711 * 173.39802 * 22 13 12 40 40 H 1.08998 * 109.58848 * 293.68574 * 22 13 12 41 41 H 1.08992 * 109.49678 * 185.41291 * 23 22 13 42 42 H 1.09001 * 109.49754 * 65.31628 * 23 22 13 43 43 H 1.08999 * 109.47056 * 299.93715 * 26 24 23 44 44 H 1.09004 * 109.46896 * 59.93302 * 26 24 23 45 45 H 1.08999 * 109.47051 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.3184 1.1225 -1.0845 6 6 5.6261 1.0185 -0.5338 7 6 6.9029 0.9176 -1.2821 8 8 6.8967 0.9181 -2.4970 9 7 8.0699 0.8252 -0.6142 10 6 9.3308 0.7249 -1.3531 11 1 9.2670 1.3198 -2.2642 12 6 9.5959 -0.7398 -1.7158 13 7 9.8078 -1.5024 -0.4779 14 6 9.0716 -2.6271 -0.2168 15 1 8.8844 -2.9249 0.8044 16 6 8.5659 -3.3845 -1.2644 17 7 9.0574 -3.2413 -2.4770 18 14 7.1882 -4.6070 -0.9532 19 1 6.8154 -4.5774 0.4838 20 1 6.0080 -4.2432 -1.7779 21 1 7.6455 -5.9718 -1.3185 22 6 10.8243 -1.0352 0.4745 23 6 10.5455 0.4328 0.8126 24 6 10.4763 1.2459 -0.4821 25 1 11.4174 1.1479 -1.0230 26 6 10.2322 2.7186 -0.1466 27 7 5.4746 1.0248 0.7671 28 8 4.3097 1.1232 1.0759 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8465 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 4.0348 1.1451 -2.1264 35 1 8.0749 0.8251 0.3558 36 1 8.7376 -1.1445 -2.2519 37 1 10.4853 -0.8059 -2.3424 38 1 8.7043 -3.7708 -3.2090 39 1 10.7764 -1.6349 1.3835 40 1 11.8140 -1.1277 0.0274 41 1 11.3464 0.8195 1.4427 42 1 9.5958 0.5102 1.3420 43 1 9.2908 2.8169 0.3939 44 1 11.0479 3.0900 0.4738 45 1 10.1833 3.2980 -1.0686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968395429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:43 Heat of formation + Delta-G solvation = -17.060969 kcal Electronic energy + Delta-G solvation = -28561.035599 eV Core-core repulsion = 24582.068186 eV Total energy + Delta-G solvation = -3978.967413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.26453 -41.19919 -39.20122 -38.93221 -36.01967 -35.21695 -34.51573 -33.67915 -32.86486 -30.91378 -29.00551 -28.72954 -26.62056 -26.30272 -25.57291 -24.00152 -23.54386 -22.79151 -21.43340 -20.37681 -19.09409 -19.02514 -18.71387 -18.03680 -17.24041 -17.01868 -16.80000 -16.65985 -16.21614 -15.99891 -15.72019 -15.44318 -15.02748 -14.87554 -14.80823 -14.68208 -14.18403 -13.85329 -13.64920 -13.22897 -13.21791 -13.06126 -12.80858 -12.70069 -12.63972 -12.55284 -12.39765 -12.26552 -12.00227 -11.62309 -11.62034 -11.49668 -11.26986 -11.12945 -10.76408 -10.71783 -10.60153 -10.12012 -8.69663 -7.92065 -5.35622 -0.04982 0.46224 1.32903 1.37422 1.44944 1.75331 1.88511 2.15120 2.42849 2.82387 3.00799 3.23464 3.49382 3.63580 3.79128 3.80870 3.93754 4.01407 4.07032 4.10014 4.40307 4.45404 4.49749 4.55740 4.62358 4.65182 4.65397 4.73529 4.77674 4.83222 4.91180 4.93389 5.02699 5.12211 5.18135 5.21215 5.40996 5.44447 5.52911 5.60876 5.65515 6.11000 6.34328 6.36770 6.87988 7.04928 7.09769 7.82832 8.32618 9.13005 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.004722 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.993360 B = 5928.132509 C = 7615.439570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.146 3.854 4 C -0.028 4.028 5 C -0.169 4.169 6 C -0.047 4.047 7 C 0.588 3.412 8 O -0.565 6.565 9 N -0.672 5.672 10 C 0.133 3.867 11 H 0.074 0.926 12 C 0.170 3.830 13 N -0.602 5.602 14 C -0.251 4.251 15 H 0.064 0.936 16 C -0.046 4.046 17 N -0.929 5.929 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.301 1.301 21 H -0.285 1.285 22 C 0.136 3.864 23 C -0.118 4.118 24 C -0.087 4.087 25 H 0.087 0.913 26 C -0.135 4.135 27 N -0.335 5.335 28 O 0.140 5.860 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.193 0.807 35 H 0.407 0.593 36 H 0.049 0.951 37 H 0.007 0.993 38 H 0.247 0.753 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.636 15.581 7.849 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.341 6.341 3 C 0.070 3.930 4 C -0.091 4.091 5 C -0.191 4.191 6 C -0.204 4.204 7 C 0.372 3.628 8 O -0.443 6.443 9 N -0.322 5.322 10 C 0.027 3.973 11 H 0.092 0.908 12 C 0.043 3.957 13 N -0.325 5.325 14 C -0.382 4.382 15 H 0.082 0.918 16 C -0.242 4.242 17 N -0.576 5.576 18 Si 0.776 3.224 19 H -0.191 1.191 20 H -0.228 1.228 21 H -0.211 1.211 22 C 0.011 3.989 23 C -0.157 4.157 24 C -0.106 4.106 25 H 0.105 0.895 26 C -0.193 4.193 27 N -0.033 5.033 28 O 0.059 5.941 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.210 0.790 35 H 0.244 0.756 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.580 15.231 7.865 20.687 hybrid contribution -0.960 -1.156 -0.830 1.717 sum -12.540 14.075 7.035 20.121 Atomic orbital electron populations 1.23012 0.77776 1.04082 1.02048 1.87958 1.22728 1.27542 1.95915 1.20997 0.80017 0.86010 1.06019 1.24582 0.96580 1.03600 0.84376 1.22721 0.89097 1.04571 1.02747 1.23549 0.97240 1.09024 0.90613 1.17154 0.82608 0.76759 0.86229 1.90740 1.86987 1.52636 1.13940 1.45661 1.05184 1.70732 1.10640 1.21703 0.82846 0.97709 0.95050 0.90760 1.20908 0.98358 0.88492 0.87988 1.44177 1.41020 1.26988 1.20324 1.19414 1.25529 1.01306 0.91905 0.91799 1.25624 1.02430 0.99904 0.96245 1.70153 1.42885 1.43783 1.00755 0.85499 0.79792 0.79283 0.77805 1.19095 1.22827 1.21122 1.21151 0.90720 0.94314 0.92706 1.21975 1.01937 0.95186 0.96591 1.21295 0.96902 0.95997 0.96379 0.89519 1.21769 1.02082 0.93664 1.01762 1.74154 0.98232 1.15483 1.15429 1.84735 1.11124 1.64426 1.33835 0.89201 0.91685 0.91902 0.87387 0.86359 0.79013 0.75635 0.93278 0.97466 0.94420 0.92725 0.96156 0.88719 0.92924 0.93357 0.90217 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -8.25 10.69 -148.98 -1.59 -9.84 16 3 C 0.15 2.07 6.50 71.24 0.46 2.54 16 4 C -0.03 -0.67 7.10 25.01 0.18 -0.49 16 5 C -0.17 -4.97 10.92 22.60 0.25 -4.72 16 6 C -0.05 -1.70 7.19 42.96 0.31 -1.39 16 7 C 0.59 24.92 7.82 86.93 0.68 25.60 16 8 O -0.56 -27.28 16.61 -3.70 -0.06 -27.34 16 9 N -0.67 -26.44 4.25 -444.57 -1.89 -28.33 16 10 C 0.13 5.27 2.24 45.07 0.10 5.37 16 11 H 0.07 3.02 7.58 -2.39 -0.02 3.00 16 12 C 0.17 8.62 4.91 86.37 0.42 9.05 16 13 N -0.60 -30.50 2.91 -699.07 -2.04 -32.54 16 14 C -0.25 -14.30 9.58 84.03 0.81 -13.50 16 15 H 0.06 3.58 7.89 -2.91 -0.02 3.55 16 16 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 17 N -0.93 -58.43 11.19 21.65 0.24 -58.18 16 18 Si 0.95 48.46 29.59 68.60 2.03 50.49 16 19 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 21 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16 22 C 0.14 5.46 6.52 86.36 0.56 6.02 16 23 C -0.12 -3.61 5.20 30.67 0.16 -3.45 16 24 C -0.09 -2.64 2.48 -10.77 -0.03 -2.67 16 25 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 26 C -0.14 -3.22 9.05 71.98 0.65 -2.57 16 27 N -0.34 -11.29 11.84 -49.52 -0.59 -11.87 16 28 O 0.14 3.90 11.18 71.93 0.80 4.71 16 29 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.19 5.02 8.06 -2.91 -0.02 5.00 16 35 H 0.41 15.00 6.40 -92.71 -0.59 14.41 16 36 H 0.05 2.99 6.03 -2.39 -0.01 2.97 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.05 1.66 6.40 -2.39 -0.02 1.64 16 43 H 0.05 1.18 7.54 -2.39 -0.02 1.16 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -77.80 370.71 3.54 -74.26 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.41 Total: 19.67 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 6.22 Total: 18.99 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -4.27 Total: -130.93 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.85 Total: -32.47 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -77.80 3.54 -74.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968395429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.198 kcal (2) G-P(sol) polarization free energy of solvation -77.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds