Wall clock time and date at job start Tue Mar 31 2020 14:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99766 * 2 1 4 4 C 1.50697 * 109.46754 * 179.97438 * 3 2 1 5 5 C 1.35315 * 126.66285 * 90.00422 * 4 3 2 6 6 C 1.42280 * 103.92403 * 180.02562 * 5 4 3 7 7 C 1.48324 * 126.94027 * 180.02562 * 6 5 4 8 8 O 1.21494 * 120.00167 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99867 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99935 * 180.27259 * 9 7 6 11 11 H 1.08991 * 109.50100 * 324.72731 * 10 9 7 12 12 C 1.53193 * 109.49574 * 84.79682 * 10 9 7 13 13 N 1.47000 * 108.74141 * 65.34044 * 12 10 9 14 14 C 1.36930 * 120.61607 * 233.57178 * 13 12 10 15 15 H 1.07996 * 120.00051 * 151.85813 * 14 13 12 16 16 C 1.38818 * 120.00016 * 331.85360 * 14 13 12 17 17 N 1.31619 * 120.00273 * 343.07082 * 16 14 13 18 18 Si 1.86796 * 119.99826 * 163.06384 * 16 14 13 19 19 H 1.48501 * 109.47408 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47305 * 120.00175 * 18 16 14 21 21 H 1.48504 * 109.47606 * 240.00442 * 18 16 14 22 22 C 1.46925 * 118.75161 * 53.59581 * 13 12 10 23 23 C 1.53198 * 108.77343 * 306.38657 * 22 13 12 24 24 C 1.53041 * 109.31174 * 54.63987 * 23 22 13 25 25 H 1.08997 * 109.46203 * 58.65110 * 24 23 22 26 26 C 1.52997 * 109.46306 * 178.61176 * 24 23 22 27 27 N 1.30986 * 106.11890 * 0.25999 * 6 5 4 28 28 O 1.20909 * 111.44127 * 359.53505 * 27 6 5 29 29 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47095 * 299.99846 * 1 2 3 31 31 H 1.08994 * 109.46963 * 59.99980 * 1 2 3 32 32 H 1.09003 * 109.46823 * 60.00155 * 3 2 1 33 33 H 1.08998 * 109.47093 * 299.99780 * 3 2 1 34 34 H 1.08004 * 128.04385 * 0.03723 * 5 4 3 35 35 H 0.96999 * 120.00001 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.58653 * 185.10327 * 12 10 9 37 37 H 1.09008 * 109.58343 * 305.53069 * 12 10 9 38 38 H 0.96997 * 120.00272 * 179.97438 * 17 16 14 39 39 H 1.08992 * 109.58629 * 186.60689 * 22 13 12 40 40 H 1.08999 * 109.70565 * 66.24116 * 22 13 12 41 41 H 1.08991 * 109.50263 * 294.68673 * 23 22 13 42 42 H 1.08998 * 109.49633 * 174.58343 * 23 22 13 43 43 H 1.08999 * 109.47191 * 180.02562 * 26 24 23 44 44 H 1.09002 * 109.46933 * 300.06599 * 26 24 23 45 45 H 1.09001 * 109.47197 * 60.06385 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3184 1.1225 -1.0845 6 6 5.6263 1.0183 -0.5340 7 6 6.9029 0.9174 -1.2822 8 8 6.8968 0.9191 -2.4971 9 7 8.0699 0.8248 -0.6144 10 6 9.3314 0.7312 -1.3534 11 1 9.1776 0.1519 -2.2637 12 6 9.8160 2.1379 -1.7181 13 7 10.1420 2.8609 -0.4804 14 6 9.5863 4.0852 -0.2209 15 1 9.4397 4.4062 0.7998 16 6 9.2116 4.9137 -1.2698 17 7 9.6772 4.6936 -2.4810 18 14 8.0464 6.3409 -0.9621 19 1 7.6702 6.3722 0.4741 20 1 8.7173 7.6149 -1.3254 21 1 6.8255 6.1707 -1.7903 22 6 11.0756 2.2453 0.4726 23 6 10.5765 0.8373 0.8121 24 6 10.3842 0.0428 -0.4816 25 1 11.3292 -0.0044 -1.0227 26 6 9.9188 -1.3752 -0.1447 27 7 5.4747 1.0244 0.7671 28 8 4.3099 1.1229 1.0759 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 4.0349 1.1455 -2.1264 35 1 8.0749 0.8239 0.3556 36 1 10.7050 2.0672 -2.3449 37 1 9.0290 2.6677 -2.2550 38 1 9.4150 5.2724 -3.2140 39 1 11.1197 2.8462 1.3808 40 1 12.0683 2.1834 0.0267 41 1 9.6263 0.9059 1.3416 42 1 11.3093 0.3338 1.4426 43 1 9.7823 -1.9414 -1.0660 44 1 10.6686 -1.8658 0.4761 45 1 8.9735 -1.3286 0.3959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968395430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:47 Heat of formation + Delta-G solvation = 6.231816 kcal Electronic energy + Delta-G solvation = -28494.169885 eV Core-core repulsion = 24516.212523 eV Total energy + Delta-G solvation = -3977.957362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.02034 -39.58685 -38.28708 -37.56124 -34.16114 -33.92821 -33.07728 -32.43217 -31.00490 -29.23519 -28.01779 -27.34977 -25.90700 -24.77465 -23.90645 -22.66738 -22.02178 -21.09344 -20.07421 -18.69174 -17.93611 -17.86995 -16.86241 -16.56667 -16.51666 -16.17229 -15.39144 -15.05663 -14.91252 -14.34260 -14.03026 -13.84908 -13.73903 -13.53075 -13.27633 -13.18495 -12.96172 -12.62338 -12.48760 -11.96263 -11.88705 -11.58863 -11.52894 -11.39618 -11.11290 -10.91272 -10.73263 -10.50054 -10.31110 -10.20009 -10.16123 -9.94040 -9.81746 -9.65053 -9.60649 -9.48728 -8.46209 -8.42571 -6.63633 -5.75854 -3.18575 1.15894 1.69793 2.75809 3.35394 3.37756 3.45419 3.47067 3.60109 3.73168 4.14693 4.48880 4.51376 4.71152 4.90488 4.96264 5.00611 5.07703 5.18469 5.25380 5.30427 5.34471 5.39894 5.42328 5.48307 5.56872 5.86882 5.89816 5.94102 6.02150 6.16716 6.28321 6.36252 6.44557 6.53576 6.62370 6.64094 6.76264 6.87054 6.98333 7.33474 7.65312 7.82058 7.90463 8.14561 8.47648 8.61896 9.22736 9.86760 10.42580 11.32190 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.004367 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.811637 B = 6409.496377 C = 7936.031030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.147 3.853 4 C -0.050 4.050 5 C -0.153 4.153 6 C -0.015 4.015 7 C 0.595 3.405 8 O -0.529 6.529 9 N -0.679 5.679 10 C 0.124 3.876 11 H 0.079 0.921 12 C 0.160 3.840 13 N -0.587 5.587 14 C -0.252 4.252 15 H 0.064 0.936 16 C 0.006 3.994 17 N -0.898 5.898 18 Si 0.895 3.105 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.143 3.857 23 C -0.131 4.131 24 C -0.093 4.093 25 H 0.080 0.920 26 C -0.145 4.145 27 N -0.322 5.322 28 O 0.128 5.872 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.182 0.818 35 H 0.402 0.598 36 H 0.029 0.971 37 H 0.097 0.903 38 H 0.253 0.747 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.317 -10.715 5.676 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.070 3.930 4 C -0.113 4.113 5 C -0.175 4.175 6 C -0.175 4.175 7 C 0.377 3.623 8 O -0.404 6.404 9 N -0.329 5.329 10 C 0.019 3.981 11 H 0.097 0.903 12 C 0.033 3.967 13 N -0.310 5.310 14 C -0.381 4.381 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.542 5.542 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.216 1.216 22 C 0.016 3.984 23 C -0.170 4.170 24 C -0.112 4.112 25 H 0.098 0.902 26 C -0.203 4.203 27 N -0.022 5.022 28 O 0.050 5.950 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.199 0.801 35 H 0.238 0.762 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.277 -10.849 5.640 17.327 hybrid contribution -1.141 1.124 -0.206 1.615 sum -13.418 -9.724 5.434 17.440 Atomic orbital electron populations 1.22809 0.79905 1.03340 1.00425 1.87981 1.20378 1.26520 1.95563 1.20618 0.83246 0.85953 1.03168 1.23824 0.94886 1.06582 0.85993 1.22489 0.89972 1.03605 1.01429 1.23720 0.97256 1.06626 0.89868 1.16735 0.81534 0.77630 0.86366 1.90775 1.86468 1.50800 1.12393 1.45713 1.05242 1.71438 1.10510 1.21925 0.81683 1.00613 0.93926 0.90291 1.21229 0.99542 0.87444 0.88467 1.43996 1.49076 1.18201 1.19733 1.19129 1.34401 0.92516 0.92069 0.91863 1.25002 1.00464 0.97535 0.96265 1.70003 1.44308 1.39702 1.00152 0.86338 0.81124 0.82430 0.77630 1.20325 1.21616 1.21611 1.20931 0.92247 0.91307 0.93891 1.22097 1.00682 0.98192 0.96026 1.21314 0.98673 0.93960 0.97296 0.90160 1.21861 1.00861 0.96493 1.01062 1.74179 0.96892 1.15204 1.15928 1.84772 1.11539 1.65477 1.33189 0.89149 0.93551 0.93558 0.90415 0.89353 0.80105 0.76249 0.95335 0.88479 0.93662 0.92783 0.96321 0.92694 0.92624 0.93027 0.92998 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.78 10.69 -35.23 -0.38 -4.16 16 3 C 0.15 1.29 6.50 36.00 0.23 1.52 16 4 C -0.05 -0.64 7.10 -35.35 -0.25 -0.89 16 5 C -0.15 -2.28 10.92 -39.07 -0.43 -2.71 16 6 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 7 C 0.59 12.21 7.81 -12.11 -0.09 12.12 16 8 O -0.53 -12.19 16.62 5.37 0.09 -12.10 16 9 N -0.68 -13.17 4.25 -54.48 -0.23 -13.40 16 10 C 0.12 2.43 2.23 -67.81 -0.15 2.28 16 11 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 12 C 0.16 3.88 4.90 -3.67 -0.02 3.86 16 13 N -0.59 -14.51 2.91 -172.26 -0.50 -15.01 16 14 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 15 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 16 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 17 N -0.90 -26.71 11.19 55.49 0.62 -26.09 16 18 Si 0.89 22.45 29.59 -169.99 -5.03 17.42 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 C 0.14 2.91 6.52 -3.71 -0.02 2.89 16 23 C -0.13 -2.16 5.20 -26.61 -0.14 -2.30 16 24 C -0.09 -1.51 2.48 -90.58 -0.22 -1.74 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 26 C -0.15 -1.98 9.05 37.16 0.34 -1.64 16 27 N -0.32 -5.50 11.84 33.30 0.39 -5.11 16 28 O 0.13 1.88 11.18 17.24 0.19 2.08 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.18 2.38 8.06 -52.48 -0.42 1.96 16 35 H 0.40 7.46 6.40 -40.82 -0.26 7.19 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 2.77 6.06 -51.92 -0.31 2.45 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.93 6.40 -51.93 -0.33 0.60 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -33.24 370.74 -6.45 -39.69 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.73 Total: 4.27 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.47 Total: 6.82 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.28 Total: -59.61 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.09 Total: -14.18 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.24 -6.45 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968395430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.924 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds