Wall clock time and date at job start Tue Mar 31 2020 14:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99766 * 2 1 4 4 C 1.50697 * 109.46754 * 179.97438 * 3 2 1 5 5 C 1.35315 * 126.66285 * 90.00422 * 4 3 2 6 6 C 1.42280 * 103.92403 * 180.02562 * 5 4 3 7 7 C 1.48324 * 126.94027 * 180.02562 * 6 5 4 8 8 O 1.21494 * 120.00167 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99867 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99935 * 180.27259 * 9 7 6 11 11 H 1.08991 * 109.50100 * 324.72731 * 10 9 7 12 12 C 1.53193 * 109.49574 * 84.79682 * 10 9 7 13 13 N 1.47000 * 108.74141 * 65.34044 * 12 10 9 14 14 C 1.36930 * 120.61607 * 233.57178 * 13 12 10 15 15 H 1.07996 * 120.00051 * 151.85813 * 14 13 12 16 16 C 1.38818 * 120.00016 * 331.85360 * 14 13 12 17 17 N 1.31619 * 120.00273 * 343.07082 * 16 14 13 18 18 Si 1.86796 * 119.99826 * 163.06384 * 16 14 13 19 19 H 1.48501 * 109.47408 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47305 * 120.00175 * 18 16 14 21 21 H 1.48504 * 109.47606 * 240.00442 * 18 16 14 22 22 C 1.46925 * 118.75161 * 53.59581 * 13 12 10 23 23 C 1.53198 * 108.77343 * 306.38657 * 22 13 12 24 24 C 1.53041 * 109.31174 * 54.63987 * 23 22 13 25 25 H 1.08997 * 109.46203 * 58.65110 * 24 23 22 26 26 C 1.52997 * 109.46306 * 178.61176 * 24 23 22 27 27 N 1.30986 * 106.11890 * 0.25999 * 6 5 4 28 28 O 1.20909 * 111.44127 * 359.53505 * 27 6 5 29 29 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47095 * 299.99846 * 1 2 3 31 31 H 1.08994 * 109.46963 * 59.99980 * 1 2 3 32 32 H 1.09003 * 109.46823 * 60.00155 * 3 2 1 33 33 H 1.08998 * 109.47093 * 299.99780 * 3 2 1 34 34 H 1.08004 * 128.04385 * 0.03723 * 5 4 3 35 35 H 0.96999 * 120.00001 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.58653 * 185.10327 * 12 10 9 37 37 H 1.09008 * 109.58343 * 305.53069 * 12 10 9 38 38 H 0.96997 * 120.00272 * 179.97438 * 17 16 14 39 39 H 1.08992 * 109.58629 * 186.60689 * 22 13 12 40 40 H 1.08999 * 109.70565 * 66.24116 * 22 13 12 41 41 H 1.08991 * 109.50263 * 294.68673 * 23 22 13 42 42 H 1.08998 * 109.49633 * 174.58343 * 23 22 13 43 43 H 1.08999 * 109.47191 * 180.02562 * 26 24 23 44 44 H 1.09002 * 109.46933 * 300.06599 * 26 24 23 45 45 H 1.09001 * 109.47197 * 60.06385 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3184 1.1225 -1.0845 6 6 5.6263 1.0183 -0.5340 7 6 6.9029 0.9174 -1.2822 8 8 6.8968 0.9191 -2.4971 9 7 8.0699 0.8248 -0.6144 10 6 9.3314 0.7312 -1.3534 11 1 9.1776 0.1519 -2.2637 12 6 9.8160 2.1379 -1.7181 13 7 10.1420 2.8609 -0.4804 14 6 9.5863 4.0852 -0.2209 15 1 9.4397 4.4062 0.7998 16 6 9.2116 4.9137 -1.2698 17 7 9.6772 4.6936 -2.4810 18 14 8.0464 6.3409 -0.9621 19 1 7.6702 6.3722 0.4741 20 1 8.7173 7.6149 -1.3254 21 1 6.8255 6.1707 -1.7903 22 6 11.0756 2.2453 0.4726 23 6 10.5765 0.8373 0.8121 24 6 10.3842 0.0428 -0.4816 25 1 11.3292 -0.0044 -1.0227 26 6 9.9188 -1.3752 -0.1447 27 7 5.4747 1.0244 0.7671 28 8 4.3099 1.1229 1.0759 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 4.0349 1.1455 -2.1264 35 1 8.0749 0.8239 0.3556 36 1 10.7050 2.0672 -2.3449 37 1 9.0290 2.6677 -2.2550 38 1 9.4150 5.2724 -3.2140 39 1 11.1197 2.8462 1.3808 40 1 12.0683 2.1834 0.0267 41 1 9.6263 0.9059 1.3416 42 1 11.3093 0.3338 1.4426 43 1 9.7823 -1.9414 -1.0660 44 1 10.6686 -1.8658 0.4761 45 1 8.9735 -1.3286 0.3959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968395430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:46 Heat of formation + Delta-G solvation = -16.839171 kcal Electronic energy + Delta-G solvation = -28495.170318 eV Core-core repulsion = 24516.212523 eV Total energy + Delta-G solvation = -3978.957795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.26454 -41.19785 -39.19649 -38.91891 -36.00886 -35.21685 -34.51344 -33.67713 -32.85794 -30.91200 -29.00298 -28.72972 -26.60890 -26.29505 -25.56918 -24.00058 -23.54090 -22.79042 -21.43458 -20.37299 -19.06915 -19.05263 -18.70356 -18.03766 -17.21851 -17.00802 -16.79998 -16.65650 -16.21111 -16.00184 -15.70833 -15.43454 -15.02673 -14.87373 -14.80693 -14.67633 -14.18276 -13.85183 -13.64512 -13.23198 -13.21084 -13.05369 -12.79590 -12.69659 -12.63892 -12.54985 -12.39887 -12.25257 -11.99060 -11.62235 -11.61819 -11.49867 -11.26782 -11.12763 -10.76246 -10.71537 -10.59175 -10.11707 -8.68083 -7.90141 -5.34851 -0.05082 0.47025 1.35753 1.38062 1.47382 1.73172 1.91530 2.12044 2.44816 2.82243 2.99032 3.25101 3.49659 3.64050 3.78957 3.80611 3.93592 4.00844 4.06777 4.09591 4.40505 4.45506 4.48961 4.58588 4.61944 4.65586 4.66049 4.73318 4.77502 4.83325 4.90809 4.94886 5.02561 5.12079 5.17878 5.21222 5.40439 5.44299 5.53562 5.61247 5.65892 6.08988 6.35733 6.36797 6.87781 7.04960 7.10852 7.83535 8.34344 9.14957 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.004367 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.811637 B = 6409.496377 C = 7936.031030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.147 3.853 4 C -0.027 4.027 5 C -0.169 4.169 6 C -0.046 4.046 7 C 0.588 3.412 8 O -0.565 6.565 9 N -0.672 5.672 10 C 0.133 3.867 11 H 0.073 0.927 12 C 0.170 3.830 13 N -0.601 5.601 14 C -0.252 4.252 15 H 0.064 0.936 16 C -0.048 4.048 17 N -0.930 5.930 18 Si 0.951 3.049 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.298 1.298 22 C 0.136 3.864 23 C -0.118 4.118 24 C -0.087 4.087 25 H 0.086 0.914 26 C -0.136 4.136 27 N -0.335 5.335 28 O 0.139 5.861 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.193 0.807 35 H 0.407 0.593 36 H 0.007 0.993 37 H 0.050 0.950 38 H 0.246 0.754 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.822 -11.801 7.864 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.070 3.930 4 C -0.091 4.091 5 C -0.191 4.191 6 C -0.204 4.204 7 C 0.373 3.627 8 O -0.443 6.443 9 N -0.322 5.322 10 C 0.027 3.973 11 H 0.091 0.909 12 C 0.043 3.957 13 N -0.325 5.325 14 C -0.382 4.382 15 H 0.082 0.918 16 C -0.244 4.244 17 N -0.577 5.577 18 Si 0.780 3.220 19 H -0.190 1.190 20 H -0.214 1.214 21 H -0.225 1.225 22 C 0.011 3.989 23 C -0.157 4.157 24 C -0.106 4.106 25 H 0.105 0.895 26 C -0.193 4.193 27 N -0.033 5.033 28 O 0.059 5.941 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.210 0.790 35 H 0.244 0.756 36 H 0.025 0.975 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.753 -11.959 7.880 19.856 hybrid contribution -0.726 1.449 -0.837 1.824 sum -14.479 -10.509 7.043 19.227 Atomic orbital electron populations 1.23023 0.77825 1.04294 1.01848 1.87926 1.22592 1.26953 1.95890 1.20932 0.80125 0.86236 1.05721 1.24535 0.96508 1.03618 0.84398 1.22715 0.89067 1.04624 1.02736 1.23549 0.97162 1.09067 0.90604 1.17147 0.82622 0.76736 0.86228 1.90740 1.87195 1.52418 1.13945 1.45664 1.04972 1.70945 1.10637 1.21701 0.82876 0.97745 0.94992 0.90880 1.20911 0.97119 0.89618 0.88015 1.44184 1.50178 1.17785 1.20329 1.19413 1.33574 0.93288 0.91961 0.91792 1.25693 1.02293 1.00189 0.96231 1.70159 1.45902 1.40801 1.00804 0.85436 0.78885 0.79825 0.77840 1.18952 1.21374 1.22509 1.21139 0.91541 0.93449 0.92733 1.21977 1.01456 0.95725 0.96542 1.21292 0.97560 0.95288 0.96430 0.89530 1.21772 1.01417 0.94406 1.01729 1.74156 0.98127 1.15576 1.15421 1.84737 1.11098 1.64482 1.33812 0.88557 0.92024 0.92206 0.87788 0.86831 0.79016 0.75635 0.97508 0.93195 0.94434 0.92679 0.96231 0.92914 0.88786 0.92699 0.90213 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -7.04 10.69 -148.98 -1.59 -8.63 16 3 C 0.15 2.11 6.50 71.24 0.46 2.57 16 4 C -0.03 -0.65 7.10 25.01 0.18 -0.47 16 5 C -0.17 -4.97 10.92 22.60 0.25 -4.73 16 6 C -0.05 -1.68 7.19 42.96 0.31 -1.37 16 7 C 0.59 24.93 7.81 86.93 0.68 25.61 16 8 O -0.56 -27.28 16.62 -3.70 -0.06 -27.34 16 9 N -0.67 -26.45 4.25 -444.58 -1.89 -28.34 16 10 C 0.13 5.27 2.23 45.07 0.10 5.37 16 11 H 0.07 2.99 7.58 -2.39 -0.02 2.97 16 12 C 0.17 8.61 4.90 86.35 0.42 9.03 16 13 N -0.60 -30.20 2.91 -698.90 -2.03 -32.24 16 14 C -0.25 -14.14 9.58 84.04 0.81 -13.33 16 15 H 0.06 3.52 7.88 -2.91 -0.02 3.50 16 16 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 17 N -0.93 -57.75 11.19 21.65 0.24 -57.51 16 18 Si 0.95 47.13 29.59 68.60 2.03 49.16 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 21 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 22 C 0.14 5.44 6.52 86.36 0.56 6.01 16 23 C -0.12 -3.62 5.20 30.67 0.16 -3.46 16 24 C -0.09 -2.66 2.48 -10.77 -0.03 -2.69 16 25 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 26 C -0.14 -3.31 9.05 71.98 0.65 -2.66 16 27 N -0.34 -11.27 11.84 -49.50 -0.59 -11.85 16 28 O 0.14 3.90 11.18 71.85 0.80 4.70 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.19 5.03 8.06 -2.91 -0.02 5.00 16 35 H 0.41 15.01 6.40 -92.71 -0.59 14.41 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.05 3.01 6.06 -2.38 -0.01 2.99 16 38 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 1.66 6.40 -2.39 -0.02 1.65 16 42 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.05 1.20 7.54 -2.39 -0.02 1.18 16 Total: -1.00 -75.76 370.74 3.54 -72.22 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.41 Total: 20.88 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 6.22 Total: 18.95 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -4.27 Total: -129.94 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.85 Total: -31.27 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -75.76 3.54 -72.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968395430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.377 kcal (2) G-P(sol) polarization free energy of solvation -75.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds