Wall clock time and date at job start Tue Mar 31 2020 14:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42901 * 113.99836 * 2 1 4 4 C 1.50695 * 109.47100 * 180.02562 * 3 2 1 5 5 C 1.35316 * 126.66479 * 89.99831 * 4 3 2 6 6 C 1.42274 * 103.92110 * 180.02562 * 5 4 3 7 7 C 1.48328 * 126.93810 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00002 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00072 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00306 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.49963 * 35.06574 * 10 9 7 12 12 C 1.53195 * 109.49842 * 275.00664 * 10 9 7 13 13 N 1.46917 * 108.77828 * 185.37957 * 12 10 9 14 14 C 1.36935 * 120.63313 * 233.58525 * 13 12 10 15 15 H 1.08003 * 120.00334 * 151.84309 * 14 13 12 16 16 C 1.38816 * 120.00109 * 331.84348 * 14 13 12 17 17 N 1.31624 * 119.99356 * 343.07479 * 16 14 13 18 18 Si 1.86793 * 120.00395 * 163.07501 * 16 14 13 19 19 H 1.48500 * 109.47341 * 59.99642 * 18 16 14 20 20 H 1.48504 * 109.47235 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46651 * 299.99824 * 18 16 14 22 22 C 1.46934 * 118.73910 * 53.60508 * 13 12 10 23 23 C 1.53194 * 108.89214 * 306.32295 * 22 13 12 24 24 C 1.53042 * 109.52616 * 155.15113 * 10 9 7 25 25 H 1.08991 * 109.45872 * 61.32874 * 24 10 9 26 26 C 1.52999 * 109.45796 * 301.35004 * 24 10 9 27 27 N 1.30983 * 106.12302 * 0.26549 * 6 5 4 28 28 O 1.20910 * 111.43826 * 359.53667 * 27 6 5 29 29 H 1.08995 * 109.46624 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46781 * 299.99845 * 1 2 3 31 31 H 1.08992 * 109.47045 * 59.99968 * 1 2 3 32 32 H 1.09000 * 109.46715 * 59.99990 * 3 2 1 33 33 H 1.09002 * 109.46925 * 300.00628 * 3 2 1 34 34 H 1.07992 * 128.03943 * 0.02562 * 5 4 3 35 35 H 0.97002 * 120.00279 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.58933 * 65.58719 * 12 10 9 37 37 H 1.09007 * 109.58443 * 305.16398 * 12 10 9 38 38 H 0.96997 * 119.99488 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.58460 * 66.18260 * 22 13 12 40 40 H 1.09001 * 109.58650 * 186.46265 * 22 13 12 41 41 H 1.08996 * 109.49250 * 174.65763 * 23 22 13 42 42 H 1.09002 * 109.49602 * 294.75299 * 23 22 13 43 43 H 1.09000 * 109.46817 * 59.99939 * 26 24 10 44 44 H 1.08991 * 109.47274 * 179.97438 * 26 24 10 45 45 H 1.08995 * 109.47589 * 300.00425 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.3176 1.1229 -1.0864 6 6 5.6258 1.0186 -0.5369 7 6 6.9018 0.9169 -1.2862 8 8 6.8946 0.9179 -2.5012 9 7 8.0693 0.8233 -0.6194 10 6 9.3297 0.7234 -1.3594 11 1 9.2662 1.3213 -2.2685 12 6 9.5918 -0.7404 -1.7275 13 7 10.9173 -0.8406 -2.3533 14 6 11.0675 -1.4337 -3.5784 15 1 11.8744 -1.1314 -4.2295 16 6 10.1825 -2.4235 -3.9834 17 7 9.4195 -3.0270 -3.0968 18 14 10.0745 -2.8989 -5.7866 19 1 11.3975 -3.3893 -6.2494 20 1 9.0615 -3.9716 -5.9559 21 1 9.6780 -1.7133 -6.5881 22 6 12.0788 -0.2926 -1.6395 23 6 11.7923 1.1669 -1.2726 24 6 10.4769 1.2394 -0.4877 25 1 10.5559 0.6253 0.4093 26 6 10.2016 2.6907 -0.0895 27 7 5.4753 1.0243 0.7642 28 8 4.3107 1.1225 1.0740 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 4.0332 1.1459 -2.1280 35 1 8.0751 0.8221 0.3506 36 1 8.8302 -1.0831 -2.4279 37 1 9.5657 -1.3540 -0.8269 38 1 8.8014 -3.7189 -3.3798 39 1 12.2554 -0.8697 -0.7318 40 1 12.9587 -0.3423 -2.2810 41 1 12.6068 1.5547 -0.6608 42 1 11.7057 1.7605 -2.1827 43 1 9.2678 2.7429 0.4703 44 1 11.0183 3.0583 0.5316 45 1 10.1221 3.3048 -0.9865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968395431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:50 Heat of formation + Delta-G solvation = 4.986037 kcal Electronic energy + Delta-G solvation = -27801.222546 eV Core-core repulsion = 23823.211163 eV Total energy + Delta-G solvation = -3978.011383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.17024 -39.57403 -38.34199 -37.59990 -34.39457 -34.07010 -33.26147 -32.66803 -30.95145 -28.98904 -28.09251 -27.37133 -25.97693 -24.85092 -23.95293 -22.82685 -21.86876 -21.00106 -19.91305 -19.28771 -18.04007 -17.92535 -16.80542 -16.70087 -16.62470 -16.23738 -15.64021 -15.21607 -14.90063 -14.33210 -14.11954 -13.80403 -13.72200 -13.53902 -13.35427 -13.25138 -13.01407 -12.61254 -12.40512 -12.03103 -11.92637 -11.70587 -11.62010 -11.57597 -10.87877 -10.72046 -10.66690 -10.45208 -10.43731 -10.21407 -10.17594 -10.09466 -9.90740 -9.78686 -9.66037 -9.48843 -8.59641 -8.40404 -6.63712 -5.73185 -3.17091 1.00406 1.54796 2.64313 3.17234 3.44408 3.45384 3.50895 3.52829 3.61542 3.98760 4.35238 4.56426 4.60950 4.79510 4.89385 4.94758 4.98149 5.15754 5.24828 5.27523 5.29655 5.31694 5.40642 5.53988 5.60985 5.75006 5.91467 6.01887 6.03418 6.11674 6.24410 6.38658 6.46646 6.51147 6.58121 6.72374 6.75539 6.87929 6.98278 7.28026 7.71705 7.72840 7.85490 7.97516 8.43930 8.51048 9.24808 9.88833 10.43985 11.34904 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.003471 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.488927 B = 8065.077709 C = 9840.509944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.147 3.853 4 C -0.047 4.047 5 C -0.152 4.152 6 C -0.017 4.017 7 C 0.592 3.408 8 O -0.513 6.513 9 N -0.700 5.700 10 C 0.123 3.877 11 H 0.085 0.915 12 C 0.166 3.834 13 N -0.587 5.587 14 C -0.258 4.258 15 H 0.066 0.934 16 C 0.007 3.993 17 N -0.899 5.899 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.141 3.859 23 C -0.125 4.125 24 C -0.092 4.092 25 H 0.068 0.932 26 C -0.145 4.145 27 N -0.326 5.326 28 O 0.128 5.872 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.183 0.817 35 H 0.398 0.602 36 H 0.095 0.905 37 H 0.018 0.982 38 H 0.254 0.746 39 H 0.018 0.982 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.266 12.043 9.880 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.070 3.930 4 C -0.110 4.110 5 C -0.174 4.174 6 C -0.177 4.177 7 C 0.374 3.626 8 O -0.386 6.386 9 N -0.350 5.350 10 C 0.018 3.982 11 H 0.103 0.897 12 C 0.039 3.961 13 N -0.310 5.310 14 C -0.387 4.387 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.543 5.543 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.015 3.985 23 C -0.164 4.164 24 C -0.112 4.112 25 H 0.086 0.914 26 C -0.202 4.202 27 N -0.026 5.026 28 O 0.051 5.949 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.200 0.800 35 H 0.233 0.767 36 H 0.113 0.887 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.320 11.630 9.915 20.273 hybrid contribution -0.729 -0.138 -1.086 1.315 sum -14.049 11.493 8.829 20.184 Atomic orbital electron populations 1.22819 0.79784 1.03517 1.00347 1.88014 1.20468 1.26267 1.95533 1.20620 0.83143 0.86197 1.03061 1.23865 0.94951 1.06323 0.85877 1.22520 0.89901 1.03428 1.01550 1.23747 0.97314 1.06718 0.89894 1.16802 0.81454 0.77810 0.86496 1.90849 1.86061 1.49465 1.12256 1.45938 1.06119 1.72709 1.10261 1.22124 0.79750 1.02161 0.94130 0.89664 1.21102 0.89347 0.88295 0.97351 1.43934 1.00449 1.67186 1.19404 1.19099 1.14219 1.13752 0.91667 0.91611 1.25058 1.00376 0.95943 0.97879 1.70006 1.26894 1.25339 1.32015 0.86361 0.77325 0.77801 0.85233 1.20896 1.21617 1.20854 1.20973 0.91321 0.90831 0.95374 1.22123 0.95010 1.00048 0.99249 1.21361 0.95590 0.95703 0.98502 0.91363 1.21855 1.00692 0.96688 1.00992 1.74163 0.97160 1.15434 1.15838 1.84765 1.11508 1.65445 1.33232 0.89028 0.93560 0.93538 0.90467 0.89364 0.79965 0.76747 0.88673 0.96364 0.93565 0.96378 0.92542 0.92461 0.92046 0.93282 0.92989 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.63 10.69 -35.23 -0.38 -4.01 16 3 C 0.15 1.09 6.50 36.00 0.23 1.32 16 4 C -0.05 -0.53 7.10 -35.35 -0.25 -0.78 16 5 C -0.15 -2.03 10.92 -39.07 -0.43 -2.45 16 6 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 7 C 0.59 11.36 7.81 -12.11 -0.09 11.27 16 8 O -0.51 -11.70 16.62 5.37 0.09 -11.61 16 9 N -0.70 -12.57 4.37 -54.48 -0.24 -12.81 16 10 C 0.12 2.47 2.06 -67.81 -0.14 2.33 16 11 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 12 C 0.17 4.15 4.88 -3.71 -0.02 4.14 16 13 N -0.59 -15.13 2.99 -172.31 -0.52 -15.64 16 14 C -0.26 -7.32 9.58 -15.06 -0.14 -7.46 16 15 H 0.07 1.82 7.89 -52.48 -0.41 1.40 16 16 C 0.01 0.19 4.92 -17.43 -0.09 0.11 16 17 N -0.90 -27.29 11.20 55.49 0.62 -26.67 16 18 Si 0.90 22.76 29.59 -169.99 -5.03 17.73 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 C 0.14 2.97 6.50 -3.71 -0.02 2.95 16 23 C -0.12 -2.14 5.39 -26.45 -0.14 -2.28 16 24 C -0.09 -1.54 2.27 -90.42 -0.21 -1.74 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 C -0.14 -1.99 9.02 37.16 0.34 -1.65 16 27 N -0.33 -4.84 11.84 33.29 0.39 -4.45 16 28 O 0.13 1.64 11.18 17.25 0.19 1.83 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.18 2.17 8.06 -52.49 -0.42 1.74 16 35 H 0.40 6.25 8.06 -40.82 -0.33 5.92 16 36 H 0.10 2.79 6.06 -51.93 -0.31 2.48 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 1.16 7.93 -51.93 -0.41 0.74 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.64 7.36 -51.93 -0.38 0.26 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -34.35 373.90 -6.55 -40.90 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.88 Total: 2.93 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.44 Total: 6.16 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.26 Total: -59.57 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.09 Total: -13.79 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.35 -6.55 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968395431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.888 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds