Wall clock time and date at job start Tue Mar 31 2020 14:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42901 * 113.99836 * 2 1 4 4 C 1.50695 * 109.47100 * 180.02562 * 3 2 1 5 5 C 1.35316 * 126.66479 * 89.99831 * 4 3 2 6 6 C 1.42274 * 103.92110 * 180.02562 * 5 4 3 7 7 C 1.48328 * 126.93810 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00002 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00072 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00306 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.49963 * 35.06574 * 10 9 7 12 12 C 1.53195 * 109.49842 * 275.00664 * 10 9 7 13 13 N 1.46917 * 108.77828 * 185.37957 * 12 10 9 14 14 C 1.36935 * 120.63313 * 233.58525 * 13 12 10 15 15 H 1.08003 * 120.00334 * 151.84309 * 14 13 12 16 16 C 1.38816 * 120.00109 * 331.84348 * 14 13 12 17 17 N 1.31624 * 119.99356 * 343.07479 * 16 14 13 18 18 Si 1.86793 * 120.00395 * 163.07501 * 16 14 13 19 19 H 1.48500 * 109.47341 * 59.99642 * 18 16 14 20 20 H 1.48504 * 109.47235 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46651 * 299.99824 * 18 16 14 22 22 C 1.46934 * 118.73910 * 53.60508 * 13 12 10 23 23 C 1.53194 * 108.89214 * 306.32295 * 22 13 12 24 24 C 1.53042 * 109.52616 * 155.15113 * 10 9 7 25 25 H 1.08991 * 109.45872 * 61.32874 * 24 10 9 26 26 C 1.52999 * 109.45796 * 301.35004 * 24 10 9 27 27 N 1.30983 * 106.12302 * 0.26549 * 6 5 4 28 28 O 1.20910 * 111.43826 * 359.53667 * 27 6 5 29 29 H 1.08995 * 109.46624 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46781 * 299.99845 * 1 2 3 31 31 H 1.08992 * 109.47045 * 59.99968 * 1 2 3 32 32 H 1.09000 * 109.46715 * 59.99990 * 3 2 1 33 33 H 1.09002 * 109.46925 * 300.00628 * 3 2 1 34 34 H 1.07992 * 128.03943 * 0.02562 * 5 4 3 35 35 H 0.97002 * 120.00279 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.58933 * 65.58719 * 12 10 9 37 37 H 1.09007 * 109.58443 * 305.16398 * 12 10 9 38 38 H 0.96997 * 119.99488 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.58460 * 66.18260 * 22 13 12 40 40 H 1.09001 * 109.58650 * 186.46265 * 22 13 12 41 41 H 1.08996 * 109.49250 * 174.65763 * 23 22 13 42 42 H 1.09002 * 109.49602 * 294.75299 * 23 22 13 43 43 H 1.09000 * 109.46817 * 59.99939 * 26 24 10 44 44 H 1.08991 * 109.47274 * 179.97438 * 26 24 10 45 45 H 1.08995 * 109.47589 * 300.00425 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.3176 1.1229 -1.0864 6 6 5.6258 1.0186 -0.5369 7 6 6.9018 0.9169 -1.2862 8 8 6.8946 0.9179 -2.5012 9 7 8.0693 0.8233 -0.6194 10 6 9.3297 0.7234 -1.3594 11 1 9.2662 1.3213 -2.2685 12 6 9.5918 -0.7404 -1.7275 13 7 10.9173 -0.8406 -2.3533 14 6 11.0675 -1.4337 -3.5784 15 1 11.8744 -1.1314 -4.2295 16 6 10.1825 -2.4235 -3.9834 17 7 9.4195 -3.0270 -3.0968 18 14 10.0745 -2.8989 -5.7866 19 1 11.3975 -3.3893 -6.2494 20 1 9.0615 -3.9716 -5.9559 21 1 9.6780 -1.7133 -6.5881 22 6 12.0788 -0.2926 -1.6395 23 6 11.7923 1.1669 -1.2726 24 6 10.4769 1.2394 -0.4877 25 1 10.5559 0.6253 0.4093 26 6 10.2016 2.6907 -0.0895 27 7 5.4753 1.0243 0.7642 28 8 4.3107 1.1225 1.0740 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 4.0332 1.1459 -2.1280 35 1 8.0751 0.8221 0.3506 36 1 8.8302 -1.0831 -2.4279 37 1 9.5657 -1.3540 -0.8269 38 1 8.8014 -3.7189 -3.3798 39 1 12.2554 -0.8697 -0.7318 40 1 12.9587 -0.3423 -2.2810 41 1 12.6068 1.5547 -0.6608 42 1 11.7057 1.7605 -2.1827 43 1 9.2678 2.7429 0.4703 44 1 11.0183 3.0583 0.5316 45 1 10.1221 3.3048 -0.9865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968395431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:50 Heat of formation + Delta-G solvation = -19.710627 kcal Electronic energy + Delta-G solvation = -27802.293474 eV Core-core repulsion = 23823.211163 eV Total energy + Delta-G solvation = -3979.082311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.28916 -41.16270 -39.25170 -38.91850 -36.20725 -35.26677 -34.78628 -33.75225 -32.85417 -30.67626 -29.05549 -28.73071 -26.61910 -26.30647 -25.67425 -24.05788 -23.34407 -22.67663 -21.49010 -20.74745 -19.09407 -19.01202 -18.80030 -17.99666 -17.31832 -17.21753 -16.82069 -16.69708 -16.18538 -16.04525 -15.65657 -15.31817 -15.26902 -14.97903 -14.85883 -14.54971 -14.14768 -13.85947 -13.61987 -13.33596 -13.23361 -13.10496 -12.73467 -12.66929 -12.61391 -12.41471 -12.39051 -12.24930 -11.95848 -11.71589 -11.69569 -11.64539 -11.27738 -11.22542 -10.77615 -10.70745 -10.58323 -10.26808 -8.73493 -7.92202 -5.38873 -0.10038 0.43636 1.39598 1.45729 1.50598 1.68402 1.82523 2.01281 2.46991 2.75026 2.98675 3.24372 3.45215 3.71401 3.73673 3.77524 3.93643 3.98921 4.06682 4.11356 4.40088 4.41857 4.49663 4.50707 4.57421 4.60347 4.66441 4.68952 4.74923 4.87341 4.93016 4.95397 5.05855 5.12542 5.13099 5.19543 5.30829 5.38686 5.48005 5.58406 5.69247 6.11117 6.24755 6.35466 6.83321 6.96351 7.08708 7.80475 8.30747 9.13002 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.003471 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.488927 B = 8065.077709 C = 9840.509944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.145 3.855 4 C -0.024 4.024 5 C -0.168 4.168 6 C -0.045 4.045 7 C 0.590 3.410 8 O -0.559 6.559 9 N -0.691 5.691 10 C 0.139 3.861 11 H 0.060 0.940 12 C 0.179 3.821 13 N -0.608 5.608 14 C -0.266 4.266 15 H 0.071 0.929 16 C -0.052 4.052 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.295 1.295 21 H -0.283 1.283 22 C 0.134 3.866 23 C -0.114 4.114 24 C -0.086 4.086 25 H 0.076 0.924 26 C -0.135 4.135 27 N -0.332 5.332 28 O 0.142 5.858 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.191 0.809 35 H 0.411 0.589 36 H 0.045 0.955 37 H -0.004 1.004 38 H 0.247 0.753 39 H 0.020 0.980 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.922 14.092 11.260 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C 0.068 3.932 4 C -0.087 4.087 5 C -0.191 4.191 6 C -0.203 4.203 7 C 0.374 3.626 8 O -0.436 6.436 9 N -0.341 5.341 10 C 0.033 3.967 11 H 0.078 0.922 12 C 0.052 3.948 13 N -0.331 5.331 14 C -0.396 4.396 15 H 0.089 0.911 16 C -0.247 4.247 17 N -0.579 5.579 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.221 1.221 21 H -0.209 1.209 22 C 0.009 3.991 23 C -0.153 4.153 24 C -0.106 4.106 25 H 0.094 0.906 26 C -0.192 4.192 27 N -0.030 5.030 28 O 0.061 5.939 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.208 0.792 35 H 0.248 0.752 36 H 0.063 0.937 37 H 0.014 0.986 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.927 13.706 11.334 22.589 hybrid contribution -0.594 -0.786 -1.435 1.741 sum -14.521 12.919 9.899 21.812 Atomic orbital electron populations 1.23008 0.77802 1.04133 1.01972 1.87947 1.22654 1.27388 1.95912 1.20991 0.80093 0.86094 1.05981 1.24523 0.96470 1.03416 0.84274 1.22715 0.89103 1.04478 1.02768 1.23416 0.96793 1.09415 0.90657 1.17228 0.82601 0.76552 0.86209 1.90812 1.86915 1.51536 1.14313 1.45797 1.05417 1.72145 1.10766 1.21684 0.82123 0.98230 0.94639 0.92225 1.20761 0.88173 0.91057 0.94827 1.44214 1.02039 1.67491 1.19381 1.19489 1.13927 1.13180 0.92995 0.91113 1.25860 1.00622 0.96522 1.01741 1.70179 1.27843 1.26117 1.33712 0.85374 0.77732 0.77113 0.80513 1.19101 1.22078 1.20907 1.21204 0.89739 0.93163 0.94954 1.22020 0.96548 0.96879 0.99831 1.21342 0.93524 0.97966 0.97720 0.90553 1.21769 1.02232 0.93908 1.01332 1.74147 0.98323 1.15430 1.15060 1.84738 1.11063 1.64332 1.33743 0.89062 0.91727 0.92077 0.87375 0.86567 0.79164 0.75203 0.93681 0.98604 0.94404 0.96189 0.92233 0.88238 0.92695 0.92654 0.90011 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -7.01 10.69 -148.98 -1.59 -8.60 16 3 C 0.15 1.70 6.50 71.23 0.46 2.16 16 4 C -0.02 -0.49 7.10 25.01 0.18 -0.31 16 5 C -0.17 -4.45 10.92 22.60 0.25 -4.20 16 6 C -0.05 -1.48 7.19 42.96 0.31 -1.17 16 7 C 0.59 23.66 7.81 86.93 0.68 24.34 16 8 O -0.56 -27.09 16.62 -3.71 -0.06 -27.15 16 9 N -0.69 -25.50 4.37 -444.57 -1.94 -27.44 16 10 C 0.14 5.73 2.06 45.07 0.09 5.82 16 11 H 0.06 2.79 7.58 -2.39 -0.02 2.77 16 12 C 0.18 9.41 4.88 86.37 0.42 9.84 16 13 N -0.61 -32.21 2.99 -699.07 -2.09 -34.31 16 14 C -0.27 -15.50 9.58 84.03 0.81 -14.69 16 15 H 0.07 3.96 7.89 -2.91 -0.02 3.94 16 16 C -0.05 -3.12 4.92 84.86 0.42 -2.70 16 17 N -0.93 -59.45 11.20 21.65 0.24 -59.21 16 18 Si 0.97 48.25 29.59 68.60 2.03 50.28 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 21 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 22 C 0.13 5.57 6.50 86.36 0.56 6.14 16 23 C -0.11 -3.65 5.39 30.78 0.17 -3.48 16 24 C -0.09 -2.74 2.27 -10.66 -0.02 -2.76 16 25 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 26 C -0.14 -3.31 9.02 71.98 0.65 -2.66 16 27 N -0.33 -9.69 11.84 -49.51 -0.59 -10.27 16 28 O 0.14 3.42 11.18 71.91 0.80 4.22 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.32 16 32 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.19 4.57 8.06 -2.91 -0.02 4.55 16 35 H 0.41 12.93 8.06 -92.71 -0.75 12.18 16 36 H 0.04 2.82 6.06 -2.39 -0.01 2.80 16 37 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 38 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 41 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.30 7.36 -2.39 -0.02 1.28 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -79.97 373.90 3.27 -76.71 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.25 Total: 17.99 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 6.21 Total: 17.78 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -4.38 Total: -131.23 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.85 Total: -31.53 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -79.97 3.27 -76.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968395431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.995 kcal (2) G-P(sol) polarization free energy of solvation -79.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds