Wall clock time and date at job start Tue Mar 31 2020 14:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00229 * 2 1 4 4 C 1.50694 * 109.47515 * 180.02562 * 3 2 1 5 5 N 1.29933 * 125.38042 * 90.30703 * 4 3 2 6 6 C 1.36070 * 108.47592 * 180.11974 * 5 4 3 7 7 C 1.47420 * 126.44747 * 179.86146 * 6 5 4 8 8 O 1.21612 * 120.00049 * 179.68890 * 7 6 5 9 9 N 1.34780 * 120.00147 * 359.69277 * 7 6 5 10 10 C 1.46496 * 120.00011 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.50194 * 35.06498 * 10 9 7 12 12 C 1.53183 * 109.49809 * 274.99484 * 10 9 7 13 13 N 1.46927 * 108.78012 * 185.41467 * 12 10 9 14 14 C 1.36933 * 120.63353 * 233.59018 * 13 12 10 15 15 H 1.08000 * 120.00191 * 151.84471 * 14 13 12 16 16 C 1.38816 * 120.00216 * 331.84389 * 14 13 12 17 17 N 1.31624 * 119.99356 * 343.07025 * 16 14 13 18 18 Si 1.86793 * 120.00395 * 163.07047 * 16 14 13 19 19 H 1.48493 * 109.47484 * 90.00085 * 18 16 14 20 20 H 1.48503 * 109.47169 * 210.00310 * 18 16 14 21 21 H 1.48506 * 109.47138 * 329.99723 * 18 16 14 22 22 C 1.46927 * 118.73625 * 53.60636 * 13 12 10 23 23 C 1.53188 * 108.89428 * 306.32307 * 22 13 12 24 24 C 1.53047 * 109.49880 * 155.15813 * 10 9 7 25 25 H 1.08999 * 109.45547 * 61.30470 * 24 10 9 26 26 C 1.53002 * 109.45598 * 301.33854 * 24 10 9 27 27 C 1.36090 * 107.10556 * 359.60157 * 6 5 4 28 28 O 1.34055 * 125.37509 * 269.97805 * 4 3 2 29 29 H 1.08999 * 109.47233 * 300.00140 * 1 2 3 30 30 H 1.09001 * 109.47622 * 59.99632 * 1 2 3 31 31 H 1.09003 * 109.47464 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46793 * 59.99683 * 3 2 1 33 33 H 1.09003 * 109.46870 * 300.00202 * 3 2 1 34 34 H 0.97001 * 119.99735 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.58943 * 65.62584 * 12 10 9 36 36 H 1.08997 * 109.59011 * 305.20183 * 12 10 9 37 37 H 0.96997 * 119.99488 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.58506 * 66.18326 * 22 13 12 39 39 H 1.09000 * 109.58539 * 186.46214 * 22 13 12 40 40 H 1.08999 * 109.49809 * 174.65694 * 23 22 13 41 41 H 1.08993 * 109.50069 * 294.75424 * 23 22 13 42 42 H 1.08999 * 109.47631 * 60.00181 * 26 24 10 43 43 H 1.09003 * 109.46594 * 180.02562 * 26 24 10 44 44 H 1.09002 * 109.47240 * 299.99097 * 26 24 10 45 45 H 1.07990 * 126.52906 * 180.27584 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 7 4.2624 1.1330 -1.0603 6 6 5.5601 1.0254 -0.6652 7 6 6.7388 0.9331 -1.5457 8 8 7.8522 0.8458 -1.0641 9 7 6.5828 0.9454 -2.8844 10 6 7.7541 0.8531 -3.7593 11 1 8.4994 0.2023 -3.3021 12 6 8.3509 2.2491 -3.9637 13 7 9.4418 2.1583 -4.9436 14 6 10.6881 2.6420 -4.6472 15 1 11.5607 2.2072 -5.1118 16 6 10.8299 3.6913 -3.7494 17 7 9.7905 4.4369 -3.4392 18 14 12.4956 4.0451 -2.9818 19 1 13.2412 5.0033 -3.8367 20 1 12.3036 4.6323 -1.6313 21 1 13.2663 2.7809 -2.8668 22 6 9.1700 1.5388 -6.2479 23 6 8.5656 0.1496 -6.0210 24 6 7.3355 0.2782 -5.1145 25 1 6.6086 0.9426 -5.5818 26 6 6.7073 -1.1019 -4.9105 27 6 5.5654 1.0248 0.6957 28 8 4.2866 1.1255 1.0921 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8463 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 5.6947 1.0147 -3.2684 35 1 8.7406 2.6222 -3.0166 36 1 7.5808 2.9248 -4.3359 37 1 9.8896 5.1703 -2.8122 38 1 8.4667 2.1566 -6.8064 39 1 10.0999 1.4456 -6.8090 40 1 8.2725 -0.2805 -6.9787 41 1 9.3035 -0.4946 -5.5431 42 1 5.8315 -1.0112 -4.2680 43 1 6.4095 -1.5117 -5.8756 44 1 7.4339 -1.7663 -4.4427 45 1 6.4330 0.9570 1.3350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968489978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:54 Heat of formation + Delta-G solvation = -34.747266 kcal Electronic energy + Delta-G solvation = -27877.568030 eV Core-core repulsion = 23897.833682 eV Total energy + Delta-G solvation = -3979.734348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.53410 -39.43866 -38.33295 -37.51430 -34.96478 -34.27946 -33.00881 -31.64801 -30.91704 -28.95161 -28.03055 -27.29919 -26.08458 -24.45251 -23.84626 -22.15458 -21.51228 -20.93249 -20.12001 -19.39839 -18.04052 -17.44643 -16.76338 -16.60821 -16.24610 -16.02943 -15.94005 -15.45670 -14.83581 -14.25783 -14.12215 -13.71616 -13.68132 -13.42278 -13.31502 -13.24096 -12.93353 -12.81135 -12.36642 -12.00086 -11.96496 -11.61338 -11.54177 -11.36731 -10.95991 -10.86641 -10.66036 -10.59439 -10.40624 -10.28628 -10.12930 -10.02548 -9.87543 -9.58629 -9.43899 -9.19327 -8.47163 -8.38771 -6.60835 -5.71705 -3.15007 1.02865 1.82747 2.33594 3.24322 3.43291 3.49648 3.51526 3.54551 3.65787 3.92753 4.52778 4.56944 4.70044 4.84526 4.89347 4.91887 5.00343 5.23754 5.24598 5.32660 5.39087 5.44964 5.55839 5.57499 5.64008 5.90233 5.97600 6.08505 6.08949 6.17131 6.30523 6.44615 6.51034 6.51222 6.58169 6.78616 6.79917 6.97140 7.01727 7.28521 7.37967 7.76795 7.86709 7.98337 8.51684 8.60030 9.26897 9.91031 10.46343 11.36317 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.003340 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.466743 B = 8382.314411 C = 9662.980181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.163 3.837 4 C 0.185 3.815 5 N -0.435 5.435 6 C -0.062 4.062 7 C 0.596 3.404 8 O -0.528 6.528 9 N -0.697 5.697 10 C 0.123 3.877 11 H 0.084 0.916 12 C 0.167 3.833 13 N -0.588 5.588 14 C -0.255 4.255 15 H 0.066 0.934 16 C 0.006 3.994 17 N -0.899 5.899 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.142 3.858 23 C -0.125 4.125 24 C -0.092 4.092 25 H 0.067 0.933 26 C -0.145 4.145 27 C 0.018 3.982 28 O -0.192 6.192 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.401 0.599 35 H 0.095 0.905 36 H 0.018 0.982 37 H 0.253 0.747 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.998 -8.454 5.693 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.085 3.915 4 C -0.024 4.024 5 N -0.167 5.167 6 C -0.183 4.183 7 C 0.380 3.620 8 O -0.405 6.405 9 N -0.347 5.347 10 C 0.018 3.982 11 H 0.102 0.898 12 C 0.040 3.960 13 N -0.311 5.311 14 C -0.385 4.385 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.543 5.543 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.204 1.204 22 C 0.015 3.985 23 C -0.165 4.165 24 C -0.111 4.111 25 H 0.086 0.914 26 C -0.202 4.202 27 C -0.056 4.056 28 O -0.078 6.078 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.235 0.765 35 H 0.113 0.887 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.315 -8.507 5.528 20.937 hybrid contribution 0.433 0.517 0.980 1.190 sum -17.882 -7.989 6.508 20.639 Atomic orbital electron populations 1.22825 0.79434 1.03544 1.00546 1.87964 1.20708 1.26049 1.95599 1.20499 0.80914 0.86369 1.03671 1.25544 0.95270 1.02835 0.78739 1.70726 1.01137 1.15082 1.29793 1.22056 0.92108 1.10859 0.93285 1.16659 0.85776 0.77357 0.82233 1.90870 1.24035 1.50357 1.75217 1.45856 1.11126 1.72601 1.05097 1.22065 0.86053 1.01937 0.88123 0.89827 1.21093 0.89421 0.89355 0.96141 1.43951 1.08790 1.68769 1.09541 1.19128 0.83830 1.10971 1.24527 0.91645 1.25047 0.97153 0.95498 1.01645 1.70022 1.29384 1.18605 1.36277 0.86304 0.83806 0.77979 0.78725 1.21477 1.21551 1.20400 1.20965 0.97760 0.90954 0.88787 1.22120 0.96482 1.00038 0.97811 1.21353 0.97914 0.96085 0.95746 0.91421 1.21855 1.00409 0.97132 1.00822 1.25393 0.84626 0.99619 0.95934 1.84364 1.17149 1.68631 1.37607 0.93516 0.93292 0.88967 0.89936 0.88399 0.76458 0.88720 0.96418 0.93705 0.96419 0.92621 0.92542 0.92090 0.93095 0.93115 0.92974 0.74979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.62 10.69 -35.23 -0.38 -4.00 16 3 C 0.16 1.35 6.56 36.00 0.24 1.58 16 4 C 0.19 2.29 7.93 -13.08 -0.10 2.18 16 5 N -0.43 -6.42 11.06 -7.66 -0.08 -6.50 16 6 C -0.06 -1.00 6.99 -83.02 -0.58 -1.58 16 7 C 0.60 11.40 7.78 -12.52 -0.10 11.30 16 8 O -0.53 -11.90 16.55 5.27 0.09 -11.81 16 9 N -0.70 -12.64 4.37 -54.77 -0.24 -12.88 16 10 C 0.12 2.49 2.07 -67.81 -0.14 2.35 16 11 H 0.08 1.90 7.58 -51.93 -0.39 1.50 16 12 C 0.17 4.17 4.88 -3.71 -0.02 4.15 16 13 N -0.59 -15.16 2.99 -172.32 -0.52 -15.67 16 14 C -0.26 -7.24 9.58 -15.06 -0.14 -7.38 16 15 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 16 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 17 N -0.90 -27.13 11.20 55.49 0.62 -26.51 16 18 Si 0.90 22.70 29.59 -169.99 -5.03 17.68 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.14 2.99 6.50 -3.71 -0.02 2.96 16 23 C -0.12 -2.16 5.39 -26.45 -0.14 -2.31 16 24 C -0.09 -1.55 2.27 -90.41 -0.21 -1.75 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 C -0.14 -2.04 9.02 37.16 0.34 -1.71 16 27 C 0.02 0.24 11.95 29.96 0.36 0.60 16 28 O -0.19 -2.39 10.73 6.48 0.07 -2.32 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 6.45 8.03 -40.82 -0.33 6.12 16 35 H 0.09 2.77 6.06 -51.93 -0.31 2.45 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.23 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -34.91 374.25 -6.20 -41.12 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.87 Total: 3.50 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 0.50 Total: 11.76 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.22 Total: -61.56 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.22 Total: -18.13 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.91 -6.20 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968489978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.370 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds