Wall clock time and date at job start Tue Mar 31 2020 14:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00229 * 2 1 4 4 C 1.50694 * 109.47515 * 180.02562 * 3 2 1 5 5 N 1.29933 * 125.38042 * 90.30703 * 4 3 2 6 6 C 1.36070 * 108.47592 * 180.11974 * 5 4 3 7 7 C 1.47420 * 126.44747 * 179.86146 * 6 5 4 8 8 O 1.21612 * 120.00049 * 179.68890 * 7 6 5 9 9 N 1.34780 * 120.00147 * 359.69277 * 7 6 5 10 10 C 1.46496 * 120.00011 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.50194 * 35.06498 * 10 9 7 12 12 C 1.53183 * 109.49809 * 274.99484 * 10 9 7 13 13 N 1.46927 * 108.78012 * 185.41467 * 12 10 9 14 14 C 1.36933 * 120.63353 * 233.59018 * 13 12 10 15 15 H 1.08000 * 120.00191 * 151.84471 * 14 13 12 16 16 C 1.38816 * 120.00216 * 331.84389 * 14 13 12 17 17 N 1.31624 * 119.99356 * 343.07025 * 16 14 13 18 18 Si 1.86793 * 120.00395 * 163.07047 * 16 14 13 19 19 H 1.48493 * 109.47484 * 90.00085 * 18 16 14 20 20 H 1.48503 * 109.47169 * 210.00310 * 18 16 14 21 21 H 1.48506 * 109.47138 * 329.99723 * 18 16 14 22 22 C 1.46927 * 118.73625 * 53.60636 * 13 12 10 23 23 C 1.53188 * 108.89428 * 306.32307 * 22 13 12 24 24 C 1.53047 * 109.49880 * 155.15813 * 10 9 7 25 25 H 1.08999 * 109.45547 * 61.30470 * 24 10 9 26 26 C 1.53002 * 109.45598 * 301.33854 * 24 10 9 27 27 C 1.36090 * 107.10556 * 359.60157 * 6 5 4 28 28 O 1.34055 * 125.37509 * 269.97805 * 4 3 2 29 29 H 1.08999 * 109.47233 * 300.00140 * 1 2 3 30 30 H 1.09001 * 109.47622 * 59.99632 * 1 2 3 31 31 H 1.09003 * 109.47464 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46793 * 59.99683 * 3 2 1 33 33 H 1.09003 * 109.46870 * 300.00202 * 3 2 1 34 34 H 0.97001 * 119.99735 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.58943 * 65.62584 * 12 10 9 36 36 H 1.08997 * 109.59011 * 305.20183 * 12 10 9 37 37 H 0.96997 * 119.99488 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.58506 * 66.18326 * 22 13 12 39 39 H 1.09000 * 109.58539 * 186.46214 * 22 13 12 40 40 H 1.08999 * 109.49809 * 174.65694 * 23 22 13 41 41 H 1.08993 * 109.50069 * 294.75424 * 23 22 13 42 42 H 1.08999 * 109.47631 * 60.00181 * 26 24 10 43 43 H 1.09003 * 109.46594 * 180.02562 * 26 24 10 44 44 H 1.09002 * 109.47240 * 299.99097 * 26 24 10 45 45 H 1.07990 * 126.52906 * 180.27584 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 7 4.2624 1.1330 -1.0603 6 6 5.5601 1.0254 -0.6652 7 6 6.7388 0.9331 -1.5457 8 8 7.8522 0.8458 -1.0641 9 7 6.5828 0.9454 -2.8844 10 6 7.7541 0.8531 -3.7593 11 1 8.4994 0.2023 -3.3021 12 6 8.3509 2.2491 -3.9637 13 7 9.4418 2.1583 -4.9436 14 6 10.6881 2.6420 -4.6472 15 1 11.5607 2.2072 -5.1118 16 6 10.8299 3.6913 -3.7494 17 7 9.7905 4.4369 -3.4392 18 14 12.4956 4.0451 -2.9818 19 1 13.2412 5.0033 -3.8367 20 1 12.3036 4.6323 -1.6313 21 1 13.2663 2.7809 -2.8668 22 6 9.1700 1.5388 -6.2479 23 6 8.5656 0.1496 -6.0210 24 6 7.3355 0.2782 -5.1145 25 1 6.6086 0.9426 -5.5818 26 6 6.7073 -1.1019 -4.9105 27 6 5.5654 1.0248 0.6957 28 8 4.2866 1.1255 1.0921 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8463 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 5.6947 1.0147 -3.2684 35 1 8.7406 2.6222 -3.0166 36 1 7.5808 2.9248 -4.3359 37 1 9.8896 5.1703 -2.8122 38 1 8.4667 2.1566 -6.8064 39 1 10.0999 1.4456 -6.8090 40 1 8.2725 -0.2805 -6.9787 41 1 9.3035 -0.4946 -5.5431 42 1 5.8315 -1.0112 -4.2680 43 1 6.4095 -1.5117 -5.8756 44 1 7.4339 -1.7663 -4.4427 45 1 6.4330 0.9570 1.3350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968489978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:53 Heat of formation + Delta-G solvation = -62.559781 kcal Electronic energy + Delta-G solvation = -27878.774071 eV Core-core repulsion = 23897.833682 eV Total energy + Delta-G solvation = -3980.940389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.58332 -41.01086 -39.17589 -38.89960 -36.19135 -35.99074 -34.65734 -32.84870 -32.57604 -30.59998 -29.04645 -28.73946 -26.65840 -26.10287 -25.42977 -23.58765 -22.74549 -22.46003 -21.60122 -20.96070 -19.30272 -18.76473 -18.28449 -17.66292 -17.28336 -17.02114 -16.80977 -16.65367 -16.53552 -15.91550 -15.65551 -15.33673 -15.24464 -14.96726 -14.73485 -14.48534 -14.09679 -13.88475 -13.57675 -13.30347 -13.29194 -13.07963 -12.72785 -12.64875 -12.56721 -12.38505 -12.29862 -12.19415 -12.05296 -11.92379 -11.66167 -11.60394 -11.23184 -11.13746 -10.78710 -10.55959 -10.35506 -10.07475 -8.70035 -7.89748 -5.35971 -0.04972 0.71981 1.38099 1.41027 1.45150 1.53670 1.99940 2.16514 2.48404 2.56100 3.18610 3.26802 3.57955 3.67329 3.77259 3.82996 3.98241 4.10538 4.14058 4.22372 4.38263 4.45849 4.53722 4.55169 4.56744 4.63551 4.64158 4.72192 4.86902 4.90501 4.93061 4.96348 5.10642 5.15672 5.18507 5.25413 5.38901 5.42292 5.51597 5.61142 5.74559 6.02333 6.20812 6.36176 6.55159 7.08225 7.14092 7.83379 8.33712 9.15488 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.003340 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.466743 B = 8382.314411 C = 9662.980181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.161 3.839 4 C 0.194 3.806 5 N -0.457 5.457 6 C -0.096 4.096 7 C 0.593 3.407 8 O -0.572 6.572 9 N -0.689 5.689 10 C 0.139 3.861 11 H 0.056 0.944 12 C 0.181 3.819 13 N -0.608 5.608 14 C -0.264 4.264 15 H 0.070 0.930 16 C -0.052 4.052 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.277 1.277 20 H -0.296 1.296 21 H -0.272 1.272 22 C 0.135 3.865 23 C -0.114 4.114 24 C -0.086 4.086 25 H 0.076 0.924 26 C -0.135 4.135 27 C 0.038 3.962 28 O -0.186 6.186 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.412 0.588 35 H 0.045 0.955 36 H -0.004 1.004 37 H 0.247 0.753 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.900 -9.805 5.439 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C 0.085 3.915 4 C -0.016 4.016 5 N -0.189 5.189 6 C -0.216 4.216 7 C 0.379 3.621 8 O -0.452 6.452 9 N -0.339 5.339 10 C 0.033 3.967 11 H 0.075 0.925 12 C 0.054 3.946 13 N -0.332 5.332 14 C -0.394 4.394 15 H 0.087 0.913 16 C -0.247 4.247 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.196 1.196 22 C 0.010 3.990 23 C -0.153 4.153 24 C -0.105 4.105 25 H 0.094 0.906 26 C -0.192 4.192 27 C -0.037 4.037 28 O -0.071 6.071 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.249 0.751 35 H 0.064 0.936 36 H 0.014 0.986 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -20.256 -9.886 5.223 23.137 hybrid contribution 0.920 0.943 1.058 1.689 sum -19.336 -8.943 6.280 22.210 Atomic orbital electron populations 1.23040 0.77343 1.04458 1.01995 1.87907 1.22954 1.26586 1.95917 1.20839 0.78128 0.86571 1.06005 1.26491 0.96763 1.00392 0.77975 1.70674 1.00646 1.16533 1.31005 1.21676 0.91845 1.14217 0.93833 1.17088 0.86257 0.76109 0.82610 1.90833 1.26045 1.52390 1.75948 1.45715 1.11017 1.72244 1.04909 1.21624 0.86300 0.98333 0.90418 0.92527 1.20754 0.88636 0.91615 0.93639 1.44228 1.08179 1.69138 1.11642 1.19496 0.85214 1.10513 1.24212 0.91281 1.25836 1.00498 0.95815 1.02588 1.70185 1.31331 1.19209 1.37007 0.85324 0.80040 0.78016 0.77416 1.20329 1.22270 1.19649 1.21188 0.98386 0.92788 0.86637 1.22017 0.96155 0.97282 0.99858 1.21327 0.98127 0.97932 0.93088 0.90578 1.21761 1.00049 0.94818 1.02557 1.25800 0.85553 0.97089 0.95243 1.84416 1.16716 1.68365 1.37614 0.91729 0.92158 0.88421 0.86810 0.86800 0.75090 0.93604 0.98580 0.94402 0.96170 0.92341 0.88366 0.92830 0.92691 0.90132 0.93535 0.72783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.87 10.69 -148.98 -1.59 -8.46 16 3 C 0.16 2.25 6.56 71.23 0.47 2.72 16 4 C 0.19 4.48 7.93 88.39 0.70 5.18 16 5 N -0.46 -13.19 11.06 -293.04 -3.24 -16.43 16 6 C -0.10 -3.11 6.99 40.41 0.28 -2.83 16 7 C 0.59 23.56 7.78 86.66 0.67 24.23 16 8 O -0.57 -27.16 16.55 -4.07 -0.07 -27.22 16 9 N -0.69 -25.63 4.37 -445.44 -1.95 -27.57 16 10 C 0.14 5.77 2.07 45.07 0.09 5.87 16 11 H 0.06 2.67 7.58 -2.39 -0.02 2.66 16 12 C 0.18 9.46 4.88 86.36 0.42 9.88 16 13 N -0.61 -32.21 2.99 -699.11 -2.09 -34.30 16 14 C -0.26 -15.38 9.58 84.04 0.81 -14.57 16 15 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 16 C -0.05 -3.10 4.92 84.86 0.42 -2.68 16 17 N -0.93 -58.77 11.20 21.65 0.24 -58.53 16 18 Si 0.96 48.01 29.59 68.60 2.03 50.04 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 21 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 22 C 0.13 5.62 6.50 86.36 0.56 6.18 16 23 C -0.11 -3.71 5.39 30.77 0.17 -3.55 16 24 C -0.09 -2.76 2.27 -10.66 -0.02 -2.78 16 25 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 26 C -0.13 -3.43 9.02 71.98 0.65 -2.78 16 27 C 0.04 0.97 11.95 67.32 0.80 1.78 16 28 O -0.19 -4.32 10.73 0.28 0.00 -4.32 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.32 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.41 13.31 8.03 -92.71 -0.74 12.57 16 35 H 0.05 2.84 6.06 -2.39 -0.01 2.83 16 36 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 40 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.36 7.35 -2.39 -0.02 1.35 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.26 5.15 8.06 -2.92 -0.02 5.13 16 Total: -1.00 -80.21 374.25 0.86 -79.35 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.26 Total: 19.33 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: 7.27 Total: 28.12 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -7.04 Total: -136.83 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.66 Total: -40.00 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -80.21 0.86 -79.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968489978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.786 kcal (2) G-P(sol) polarization free energy of solvation -80.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds