Wall clock time and date at job start Tue Mar 31 2020 14:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00196 * 2 1 4 4 C 1.50706 * 109.46872 * 180.02562 * 3 2 1 5 5 N 1.29935 * 125.37986 * 90.31441 * 4 3 2 6 6 C 1.36059 * 108.47864 * 180.11308 * 5 4 3 7 7 C 1.47423 * 126.44833 * 179.86143 * 6 5 4 8 8 O 1.21611 * 119.99678 * 179.69098 * 7 6 5 9 9 N 1.34768 * 119.99880 * 359.68415 * 7 6 5 10 10 C 1.46500 * 119.99957 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.50046 * 34.93903 * 10 9 7 12 12 C 1.53189 * 109.49922 * 274.84294 * 10 9 7 13 13 N 1.46934 * 108.77398 * 294.68190 * 12 10 9 14 14 C 1.36936 * 120.62936 * 126.37166 * 13 12 10 15 15 H 1.08006 * 120.00151 * 332.62641 * 14 13 12 16 16 C 1.38813 * 120.00131 * 152.63055 * 14 13 12 17 17 N 1.31620 * 119.99706 * 159.35565 * 16 14 13 18 18 Si 1.86796 * 119.99707 * 339.35056 * 16 14 13 19 19 H 1.48504 * 109.46935 * 92.90755 * 18 16 14 20 20 H 1.48504 * 109.47093 * 212.90124 * 18 16 14 21 21 H 1.48503 * 109.47571 * 332.90739 * 18 16 14 22 22 C 1.46921 * 118.74024 * 306.38712 * 13 12 10 23 23 C 1.53201 * 108.77137 * 53.60979 * 22 13 12 24 24 C 1.53041 * 109.31321 * 305.36312 * 23 22 13 25 25 H 1.08997 * 109.44839 * 301.35348 * 24 23 22 26 26 C 1.52997 * 109.45821 * 181.38409 * 24 23 22 27 27 C 1.36096 * 107.10091 * 359.59937 * 6 5 4 28 28 O 1.34045 * 125.37669 * 269.97469 * 4 3 2 29 29 H 1.08991 * 109.47095 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46872 * 299.99797 * 1 2 3 31 31 H 1.08996 * 109.47151 * 59.99244 * 1 2 3 32 32 H 1.08999 * 109.47195 * 60.00405 * 3 2 1 33 33 H 1.08996 * 109.46933 * 300.00202 * 3 2 1 34 34 H 0.97000 * 120.00237 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.59363 * 54.46696 * 12 10 9 36 36 H 1.09006 * 109.59208 * 174.89355 * 12 10 9 37 37 H 0.97002 * 119.99617 * 179.97438 * 17 16 14 38 38 H 1.08990 * 109.58979 * 173.39571 * 22 13 12 39 39 H 1.08999 * 109.58705 * 293.68274 * 22 13 12 40 40 H 1.09004 * 109.49639 * 185.41216 * 23 22 13 41 41 H 1.08997 * 109.49615 * 65.31504 * 23 22 13 42 42 H 1.08998 * 109.47343 * 299.93368 * 26 24 23 43 43 H 1.09002 * 109.47081 * 179.97438 * 26 24 23 44 44 H 1.09004 * 109.46901 * 59.93632 * 26 24 23 45 45 H 1.08004 * 126.52546 * 180.27612 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2626 1.1329 -1.0603 6 6 5.5601 1.0252 -0.6654 7 6 6.7389 0.9330 -1.5459 8 8 7.8522 0.8456 -1.0643 9 7 6.5827 0.9452 -2.8844 10 6 7.7541 0.8530 -3.7594 11 1 8.5004 0.2039 -3.3012 12 6 8.3485 2.2495 -3.9671 13 7 7.3774 3.0724 -4.7012 14 6 6.9793 4.2869 -4.2096 15 1 6.9954 4.4704 -3.1454 16 6 6.5551 5.2824 -5.0791 17 7 5.8069 6.2696 -4.6344 18 14 7.0462 5.2207 -6.8803 19 1 5.9907 4.5228 -7.6576 20 1 7.2085 6.6035 -7.3968 21 1 8.3298 4.4867 -7.0187 22 6 6.8414 2.5672 -5.9724 23 6 6.2639 1.1670 -5.7423 24 6 7.3361 0.2744 -5.1132 25 1 8.2032 0.2293 -5.7722 26 6 6.7737 -1.1344 -4.9137 27 6 5.5654 1.0247 0.6956 28 8 4.2867 1.1253 1.0920 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 5.6948 1.0152 -3.2685 35 1 8.5564 2.7059 -2.9993 36 1 9.2710 2.1722 -4.5426 37 1 5.5107 6.9654 -5.2419 38 1 6.0549 3.2329 -6.3277 39 1 7.6404 2.5182 -6.7122 40 1 5.9499 0.7418 -6.6956 41 1 5.4064 1.2327 -5.0726 42 1 5.9069 -1.0896 -4.2543 43 1 7.5374 -1.7705 -4.4660 44 1 6.4760 -1.5467 -5.8778 45 1 6.4332 0.9568 1.3350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968489981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:03 Heat of formation + Delta-G solvation = -55.925727 kcal Electronic energy + Delta-G solvation = -28473.798435 eV Core-core repulsion = 24493.145720 eV Total energy + Delta-G solvation = -3980.652715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.55560 -41.16231 -39.26953 -38.91607 -36.13920 -35.99923 -34.19750 -33.38249 -32.58462 -31.15769 -29.18425 -28.76925 -26.67784 -26.04686 -25.14638 -24.11324 -22.97276 -22.68037 -21.73047 -20.35575 -19.49859 -18.68665 -18.28136 -17.71346 -17.20824 -17.05685 -16.97021 -16.70898 -16.55862 -16.10713 -15.67962 -15.47368 -15.19654 -14.94238 -14.85804 -14.72061 -14.24113 -13.89263 -13.84125 -13.61668 -13.32222 -13.10828 -12.96364 -12.66301 -12.62073 -12.37139 -12.30115 -12.21644 -11.99033 -11.86676 -11.57053 -11.44270 -11.23224 -11.17112 -10.81377 -10.73147 -10.31492 -10.01429 -8.86639 -8.15323 -5.46859 -0.01803 0.75135 1.30206 1.40042 1.42408 1.51867 2.07769 2.23787 2.42317 2.58558 3.06918 3.19569 3.32749 3.63346 3.69407 3.79191 3.89227 4.00612 4.09205 4.20971 4.30971 4.41303 4.51025 4.54059 4.54456 4.57268 4.62158 4.67838 4.69645 4.83781 4.88542 4.90223 4.94430 4.98288 5.01107 5.12559 5.17507 5.35944 5.44372 5.57218 5.86209 5.99043 6.11426 6.26207 6.57175 6.92340 7.11584 7.62984 8.02010 9.05091 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.004113 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.128240 B = 6805.984718 C = 7514.280052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.161 3.839 4 C 0.190 3.810 5 N -0.463 5.463 6 C -0.102 4.102 7 C 0.597 3.403 8 O -0.572 6.572 9 N -0.680 5.680 10 C 0.137 3.863 11 H 0.094 0.906 12 C 0.136 3.864 13 N -0.612 5.612 14 C -0.239 4.239 15 H 0.033 0.967 16 C -0.035 4.035 17 N -0.959 5.959 18 Si 0.954 3.046 19 H -0.271 1.271 20 H -0.315 1.315 21 H -0.260 1.260 22 C 0.117 3.883 23 C -0.123 4.123 24 C -0.086 4.086 25 H 0.099 0.901 26 C -0.136 4.136 27 C 0.037 3.963 28 O -0.187 6.187 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.407 0.593 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.260 0.740 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 -16.843 6.349 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.085 3.915 4 C -0.020 4.020 5 N -0.194 5.194 6 C -0.222 4.222 7 C 0.383 3.617 8 O -0.453 6.453 9 N -0.328 5.328 10 C 0.031 3.969 11 H 0.112 0.888 12 C 0.010 3.990 13 N -0.336 5.336 14 C -0.369 4.369 15 H 0.051 0.949 16 C -0.230 4.230 17 N -0.606 5.606 18 Si 0.783 3.217 19 H -0.197 1.197 20 H -0.244 1.244 21 H -0.184 1.184 22 C -0.007 4.007 23 C -0.162 4.162 24 C -0.104 4.104 25 H 0.118 0.882 26 C -0.194 4.194 27 C -0.038 4.038 28 O -0.072 6.072 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.244 0.756 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -7.277 -16.928 6.017 19.384 hybrid contribution -0.059 1.167 -0.095 1.172 sum -7.336 -15.761 5.922 18.366 Atomic orbital electron populations 1.23051 0.77388 1.04554 1.01905 1.87893 1.22933 1.26341 1.95894 1.20771 0.78539 0.86600 1.05635 1.26364 0.96662 1.00837 0.78088 1.70706 1.01348 1.16189 1.31193 1.21898 0.92077 1.13989 0.94196 1.16919 0.86145 0.76111 0.82544 1.90745 1.25166 1.53412 1.75959 1.45730 1.11404 1.71000 1.04692 1.21589 0.87572 0.96902 0.90832 0.88809 1.21428 0.91417 0.90883 0.95294 1.44330 1.48218 1.17771 1.23321 1.18648 1.37401 0.89735 0.91113 0.94882 1.25899 0.99143 0.95578 1.02358 1.69991 1.37573 1.15783 1.37222 0.85810 0.79670 0.75068 0.81190 1.19710 1.24410 1.18386 1.21477 0.96525 0.95216 0.87524 1.22005 0.97915 0.94793 1.01508 1.21307 0.99640 0.95267 0.94235 0.88243 1.21759 1.00766 0.94447 1.02389 1.25880 0.85526 0.97208 0.95147 1.84391 1.16940 1.68379 1.37489 0.88062 0.91647 0.92542 0.86789 0.87715 0.75619 0.94506 0.93096 0.93075 0.93316 0.94227 0.89017 0.93148 0.93778 0.91949 0.90621 0.72103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.38 10.69 -148.98 -1.59 -9.97 16 3 C 0.16 3.12 6.56 71.24 0.47 3.59 16 4 C 0.19 5.28 7.93 88.39 0.70 5.98 16 5 N -0.46 -15.68 11.06 -293.04 -3.24 -18.92 16 6 C -0.10 -3.48 6.99 40.41 0.28 -3.20 16 7 C 0.60 22.54 7.78 86.66 0.67 23.22 16 8 O -0.57 -23.23 16.55 -4.06 -0.07 -23.30 16 9 N -0.68 -24.54 4.25 -445.43 -1.89 -26.43 16 10 C 0.14 4.57 2.24 45.07 0.10 4.67 16 11 H 0.09 2.99 7.58 -2.38 -0.02 2.97 16 12 C 0.14 5.58 6.12 86.36 0.53 6.11 16 13 N -0.61 -29.00 2.69 -699.08 -1.88 -30.88 16 14 C -0.24 -14.00 10.03 84.03 0.84 -13.16 16 15 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 16 C -0.04 -2.11 5.23 84.86 0.44 -1.66 16 17 N -0.96 -61.45 13.97 21.65 0.30 -61.14 16 18 Si 0.95 46.90 24.34 68.60 1.67 48.57 16 19 H -0.27 -12.37 6.62 99.48 0.66 -11.71 16 20 H -0.31 -15.88 7.11 99.48 0.71 -15.18 16 21 H -0.26 -12.13 6.64 99.48 0.66 -11.47 16 22 C 0.12 4.77 4.21 86.37 0.36 5.13 16 23 C -0.12 -3.84 5.20 30.68 0.16 -3.68 16 24 C -0.09 -2.31 2.48 -10.77 -0.03 -2.34 16 25 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 26 C -0.14 -2.98 9.05 71.98 0.65 -2.33 16 27 C 0.04 0.99 11.95 67.32 0.80 1.79 16 28 O -0.19 -4.85 10.73 0.46 0.00 -4.85 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.41 15.02 6.37 -92.71 -0.59 14.43 16 35 H 0.04 1.72 7.93 -2.39 -0.02 1.70 16 36 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 38 H 0.05 2.23 4.49 -2.39 -0.01 2.22 16 39 H 0.04 1.53 7.07 -2.39 -0.02 1.51 16 40 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.05 1.71 6.40 -2.39 -0.02 1.70 16 42 H 0.04 1.07 7.54 -2.39 -0.02 1.05 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.26 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -78.32 364.64 0.88 -77.45 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.33 Total: 23.82 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 7.24 Total: 25.66 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -6.71 Total: -137.38 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.65 Total: -38.12 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.67 Total: 48.57 kcal Total: -78.32 0.88 -77.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968489981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.520 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds