Wall clock time and date at job start Tue Mar 31 2020 14:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99917 * 2 1 4 4 C 1.50706 * 109.46814 * 179.97438 * 3 2 1 5 5 N 1.30011 * 127.33886 * 270.14602 * 4 3 2 6 6 O 1.20654 * 112.30173 * 180.30065 * 5 4 3 7 7 C 1.33496 * 113.15632 * 359.72095 * 6 5 4 8 8 C 1.37358 * 106.34229 * 359.97438 * 7 6 5 9 9 C 1.47401 * 128.56533 * 179.97438 * 8 7 6 10 10 O 1.21603 * 119.99846 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99796 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99746 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.49528 * 35.06380 * 12 11 9 14 14 C 1.53194 * 109.49442 * 275.00094 * 12 11 9 15 15 N 1.46924 * 108.77555 * 294.64815 * 14 12 11 16 16 C 1.36938 * 120.62579 * 126.37544 * 15 14 12 17 17 H 1.08001 * 119.99958 * 207.69748 * 16 15 14 18 18 C 1.38810 * 120.00257 * 27.69627 * 16 15 14 19 19 N 1.31615 * 120.00084 * 17.35109 * 18 16 15 20 20 Si 1.86806 * 120.00216 * 197.35206 * 18 16 15 21 21 H 1.48498 * 109.47018 * 59.99861 * 20 18 16 22 22 H 1.48499 * 109.47329 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47006 * 300.00114 * 20 18 16 24 24 C 1.46924 * 118.74257 * 306.39455 * 15 14 12 25 25 C 1.53190 * 108.77279 * 53.60963 * 24 15 14 26 26 C 1.53042 * 109.52340 * 155.14693 * 12 11 9 27 27 H 1.08997 * 109.46076 * 178.61775 * 26 12 11 28 28 C 1.52998 * 109.45968 * 298.58300 * 26 12 11 29 29 H 1.08995 * 109.47448 * 59.99313 * 1 2 3 30 30 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46712 * 299.99362 * 1 2 3 32 32 H 1.08999 * 109.47206 * 60.00866 * 3 2 1 33 33 H 1.08993 * 109.47384 * 300.00347 * 3 2 1 34 34 H 1.08003 * 126.82651 * 180.02562 * 7 6 5 35 35 H 0.96997 * 120.00275 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.58133 * 174.86278 * 14 12 11 37 37 H 1.08996 * 109.58938 * 54.44265 * 14 12 11 38 38 H 0.97003 * 120.00512 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.58207 * 293.82082 * 24 15 14 40 40 H 1.08998 * 109.70305 * 173.46895 * 24 15 14 41 41 H 1.09003 * 109.49833 * 65.31756 * 25 24 15 42 42 H 1.08997 * 109.49445 * 185.41287 * 25 24 15 43 43 H 1.08995 * 109.46773 * 180.02562 * 28 26 12 44 44 H 1.08999 * 109.46889 * 300.06994 * 28 26 12 45 45 H 1.08998 * 109.47247 * 60.06849 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2980 1.1217 1.0346 6 8 5.4603 1.0362 0.7221 7 6 5.6490 1.0234 -0.5994 8 6 4.4023 1.1153 -1.1687 9 6 4.0448 1.1432 -2.5984 10 8 2.8786 1.2294 -2.9320 11 7 5.0105 1.0732 -3.5360 12 6 4.6553 1.1015 -4.9570 13 1 3.7970 1.7570 -5.1044 14 6 4.3035 -0.3144 -5.4243 15 7 5.5073 -1.1527 -5.3408 16 6 5.4876 -2.3347 -4.6497 17 1 6.3961 -2.7174 -4.2085 18 6 4.3002 -3.0411 -4.5163 19 7 3.2860 -2.7801 -5.3135 20 14 4.1414 -4.3621 -3.2050 21 1 4.3517 -3.7573 -1.8651 22 1 2.7853 -4.9636 -3.2699 23 1 5.1615 -5.4159 -3.4380 24 6 6.7325 -0.6984 -6.0125 25 6 7.0570 0.7217 -5.5384 26 6 5.8420 1.6229 -5.7706 27 1 5.5852 1.6203 -6.8299 28 6 6.1743 3.0499 -5.3302 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 6.5939 0.9538 -1.1177 35 1 5.9407 1.0041 -3.2699 36 1 3.9516 -0.2819 -6.4554 37 1 3.5250 -0.7279 -4.7833 38 1 2.4563 -3.2739 -5.2205 39 1 6.5786 -0.6973 -7.0915 40 1 7.5577 -1.3649 -5.7617 41 1 7.2993 0.7041 -4.4758 42 1 7.9082 1.1069 -6.0998 43 1 7.0192 3.4215 -5.9099 44 1 5.3090 3.6918 -5.4954 45 1 6.4318 3.0527 -4.2711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968532415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:06 Heat of formation + Delta-G solvation = 5.067036 kcal Electronic energy + Delta-G solvation = -29250.670199 eV Core-core repulsion = 25272.662328 eV Total energy + Delta-G solvation = -3978.007870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.88164 -39.60297 -37.89695 -37.43814 -34.17711 -33.88165 -33.03611 -31.86594 -31.01044 -29.22436 -28.22782 -27.35098 -25.72474 -24.66671 -23.93194 -22.21744 -21.27359 -21.08966 -20.55788 -18.72278 -18.20546 -17.73036 -16.84537 -16.59191 -16.21691 -15.70228 -15.25497 -15.13032 -14.89245 -14.36324 -14.06151 -13.95248 -13.74424 -13.42288 -13.21465 -12.97287 -12.65166 -12.47798 -12.32171 -11.98745 -11.62590 -11.49417 -11.44696 -11.37791 -11.13400 -10.91275 -10.68921 -10.54475 -10.24659 -10.11444 -9.94601 -9.81023 -9.67919 -9.64522 -9.53082 -9.45072 -8.45585 -8.42211 -6.65447 -5.76041 -3.18958 1.20936 1.70387 2.98919 3.41231 3.44852 3.48627 3.50817 3.73134 3.83542 4.20239 4.48790 4.52461 4.94070 5.09569 5.15584 5.19176 5.24933 5.29909 5.33499 5.38810 5.42723 5.48905 5.53832 5.65604 5.75375 5.82293 5.85731 5.88565 5.96438 6.10317 6.24331 6.31780 6.40070 6.49511 6.60378 6.71640 6.83742 6.94316 7.13993 7.33436 7.66416 7.81075 7.98116 8.19538 8.47176 8.67069 9.22263 9.86612 10.41479 11.31792 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009487 B = 0.006052 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.748863 B = 4625.516617 C = 6037.247843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.144 3.856 4 C 0.061 3.939 5 N -0.344 5.344 6 O 0.102 5.898 7 C -0.015 4.015 8 C -0.222 4.222 9 C 0.592 3.408 10 O -0.531 6.531 11 N -0.689 5.689 12 C 0.127 3.873 13 H 0.078 0.922 14 C 0.159 3.841 15 N -0.586 5.586 16 C -0.257 4.257 17 H 0.063 0.937 18 C 0.010 3.990 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.142 3.858 25 C -0.128 4.128 26 C -0.094 4.094 27 H 0.079 0.921 28 C -0.144 4.144 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.226 0.774 35 H 0.393 0.607 36 H 0.026 0.974 37 H 0.098 0.902 38 H 0.255 0.745 39 H 0.018 0.982 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 12.479 6.102 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.297 6.297 3 C 0.067 3.933 4 C -0.101 4.101 5 N -0.049 5.049 6 O 0.038 5.962 7 C -0.097 4.097 8 C -0.229 4.229 9 C 0.377 3.623 10 O -0.409 6.409 11 N -0.339 5.339 12 C 0.022 3.978 13 H 0.096 0.904 14 C 0.032 3.968 15 N -0.309 5.309 16 C -0.387 4.387 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.539 5.539 20 Si 0.726 3.274 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.015 3.985 25 C -0.168 4.168 26 C -0.113 4.113 27 H 0.097 0.903 28 C -0.202 4.202 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.243 0.757 35 H 0.227 0.773 36 H 0.044 0.956 37 H 0.117 0.883 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.613 12.268 7.131 14.429 hybrid contribution 0.156 -0.713 -0.098 0.736 sum 2.770 11.555 7.033 13.808 Atomic orbital electron populations 1.22751 0.80272 1.03122 0.99985 1.87972 1.20144 1.26113 1.95436 1.20533 0.84292 0.86303 1.02163 1.24349 0.97413 1.01443 0.86926 1.73612 0.89597 1.18055 1.23657 1.84542 1.21528 1.66690 1.23403 1.26361 1.00502 0.99164 0.83646 1.22509 0.92429 1.11770 0.96197 1.16671 0.85760 0.77158 0.82698 1.90764 1.18265 1.50162 1.81660 1.45632 1.08806 1.73038 1.06421 1.21845 0.96384 1.01049 0.78538 0.90413 1.21220 0.90789 0.85741 0.99003 1.43962 1.06721 1.20870 1.59354 1.19000 0.95321 0.97906 1.26446 0.91933 1.24978 0.97801 0.97775 0.98374 1.69975 1.04423 1.43000 1.36541 0.86478 0.76907 0.81650 0.82390 1.20998 1.21604 1.20997 1.20927 0.90699 0.92109 0.94736 1.22084 0.96227 0.97946 1.00537 1.21323 0.95854 0.94048 1.00102 0.90279 1.21851 1.00871 0.96540 1.00908 0.93362 0.89362 0.94243 0.91784 0.89332 0.75738 0.77257 0.95608 0.88346 0.93525 0.96448 0.92804 0.92865 0.92710 0.93088 0.93056 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 11.01 101.05 1.11 1.57 16 2 O -0.38 -6.74 10.69 -35.23 -0.38 -7.11 16 3 C 0.14 2.26 6.19 36.01 0.22 2.48 16 4 C 0.06 1.03 7.21 -79.76 -0.58 0.45 16 5 N -0.34 -5.49 12.01 34.78 0.42 -5.07 16 6 O 0.10 1.40 11.06 18.64 0.21 1.61 16 7 C -0.02 -0.19 11.85 30.41 0.36 0.17 16 8 C -0.22 -3.64 6.47 -102.89 -0.67 -4.30 16 9 C 0.59 11.09 7.78 -12.53 -0.10 10.99 16 10 O -0.53 -11.66 15.36 5.27 0.08 -11.58 16 11 N -0.69 -11.56 4.25 -54.77 -0.23 -11.80 16 12 C 0.13 2.29 2.24 -67.81 -0.15 2.14 16 13 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 14 C 0.16 3.70 4.91 -3.71 -0.02 3.68 16 15 N -0.59 -13.73 2.91 -172.33 -0.50 -14.23 16 16 C -0.26 -6.84 9.59 -15.06 -0.14 -6.98 16 17 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 18 C 0.01 0.29 4.91 -17.43 -0.09 0.20 16 19 N -0.90 -26.39 11.19 55.49 0.62 -25.77 16 20 Si 0.90 22.54 29.59 -169.99 -5.03 17.51 16 21 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.14 2.69 6.51 -3.71 -0.02 2.67 16 25 C -0.13 -1.87 5.20 -26.61 -0.14 -2.01 16 26 C -0.09 -1.37 2.48 -90.58 -0.22 -1.59 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 C -0.14 -1.68 9.05 37.16 0.34 -1.35 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.39 7.12 -51.93 -0.37 1.02 16 34 H 0.23 1.76 7.68 -52.48 -0.40 1.36 16 35 H 0.39 5.62 5.82 -40.82 -0.24 5.39 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 2.74 6.03 -51.93 -0.31 2.43 16 38 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 1.01 7.94 -51.93 -0.41 0.60 16 41 H 0.05 0.74 6.41 -51.93 -0.33 0.40 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.56 7.54 -51.93 -0.39 0.17 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -33.84 367.52 -6.00 -39.84 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.63 Total: 2.92 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -0.09 Total: 8.14 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.30 Total: -56.86 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.09 Total: -17.09 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.84 -6.00 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968532415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.908 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds