Wall clock time and date at job start Tue Mar 31 2020 14:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99917 * 2 1 4 4 C 1.50706 * 109.46814 * 179.97438 * 3 2 1 5 5 N 1.30011 * 127.33886 * 270.14602 * 4 3 2 6 6 O 1.20654 * 112.30173 * 180.30065 * 5 4 3 7 7 C 1.33496 * 113.15632 * 359.72095 * 6 5 4 8 8 C 1.37358 * 106.34229 * 359.97438 * 7 6 5 9 9 C 1.47401 * 128.56533 * 179.97438 * 8 7 6 10 10 O 1.21603 * 119.99846 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99796 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99746 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.49528 * 35.06380 * 12 11 9 14 14 C 1.53194 * 109.49442 * 275.00094 * 12 11 9 15 15 N 1.46924 * 108.77555 * 294.64815 * 14 12 11 16 16 C 1.36938 * 120.62579 * 126.37544 * 15 14 12 17 17 H 1.08001 * 119.99958 * 207.69748 * 16 15 14 18 18 C 1.38810 * 120.00257 * 27.69627 * 16 15 14 19 19 N 1.31615 * 120.00084 * 17.35109 * 18 16 15 20 20 Si 1.86806 * 120.00216 * 197.35206 * 18 16 15 21 21 H 1.48498 * 109.47018 * 59.99861 * 20 18 16 22 22 H 1.48499 * 109.47329 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47006 * 300.00114 * 20 18 16 24 24 C 1.46924 * 118.74257 * 306.39455 * 15 14 12 25 25 C 1.53190 * 108.77279 * 53.60963 * 24 15 14 26 26 C 1.53042 * 109.52340 * 155.14693 * 12 11 9 27 27 H 1.08997 * 109.46076 * 178.61775 * 26 12 11 28 28 C 1.52998 * 109.45968 * 298.58300 * 26 12 11 29 29 H 1.08995 * 109.47448 * 59.99313 * 1 2 3 30 30 H 1.09002 * 109.47501 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46712 * 299.99362 * 1 2 3 32 32 H 1.08999 * 109.47206 * 60.00866 * 3 2 1 33 33 H 1.08993 * 109.47384 * 300.00347 * 3 2 1 34 34 H 1.08003 * 126.82651 * 180.02562 * 7 6 5 35 35 H 0.96997 * 120.00275 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.58133 * 174.86278 * 14 12 11 37 37 H 1.08996 * 109.58938 * 54.44265 * 14 12 11 38 38 H 0.97003 * 120.00512 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.58207 * 293.82082 * 24 15 14 40 40 H 1.08998 * 109.70305 * 173.46895 * 24 15 14 41 41 H 1.09003 * 109.49833 * 65.31756 * 25 24 15 42 42 H 1.08997 * 109.49445 * 185.41287 * 25 24 15 43 43 H 1.08995 * 109.46773 * 180.02562 * 28 26 12 44 44 H 1.08999 * 109.46889 * 300.06994 * 28 26 12 45 45 H 1.08998 * 109.47247 * 60.06849 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2980 1.1217 1.0346 6 8 5.4603 1.0362 0.7221 7 6 5.6490 1.0234 -0.5994 8 6 4.4023 1.1153 -1.1687 9 6 4.0448 1.1432 -2.5984 10 8 2.8786 1.2294 -2.9320 11 7 5.0105 1.0732 -3.5360 12 6 4.6553 1.1015 -4.9570 13 1 3.7970 1.7570 -5.1044 14 6 4.3035 -0.3144 -5.4243 15 7 5.5073 -1.1527 -5.3408 16 6 5.4876 -2.3347 -4.6497 17 1 6.3961 -2.7174 -4.2085 18 6 4.3002 -3.0411 -4.5163 19 7 3.2860 -2.7801 -5.3135 20 14 4.1414 -4.3621 -3.2050 21 1 4.3517 -3.7573 -1.8651 22 1 2.7853 -4.9636 -3.2699 23 1 5.1615 -5.4159 -3.4380 24 6 6.7325 -0.6984 -6.0125 25 6 7.0570 0.7217 -5.5384 26 6 5.8420 1.6229 -5.7706 27 1 5.5852 1.6203 -6.8299 28 6 6.1743 3.0499 -5.3302 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 6.5939 0.9538 -1.1177 35 1 5.9407 1.0041 -3.2699 36 1 3.9516 -0.2819 -6.4554 37 1 3.5250 -0.7279 -4.7833 38 1 2.4563 -3.2739 -5.2205 39 1 6.5786 -0.6973 -7.0915 40 1 7.5577 -1.3649 -5.7617 41 1 7.2993 0.7041 -4.4758 42 1 7.9082 1.1069 -6.0998 43 1 7.0192 3.4215 -5.9099 44 1 5.3090 3.6918 -5.4954 45 1 6.4318 3.0527 -4.2711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968532415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:06 Heat of formation + Delta-G solvation = -19.077086 kcal Electronic energy + Delta-G solvation = -29251.717167 eV Core-core repulsion = 25272.662328 eV Total energy + Delta-G solvation = -3979.054838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.06563 -41.06180 -39.20668 -38.84787 -35.92259 -35.09820 -34.46991 -33.16982 -32.71763 -30.74792 -29.39407 -28.87939 -26.88608 -26.14352 -25.47722 -23.69818 -22.73112 -22.40219 -21.83020 -20.27620 -19.41937 -18.91231 -18.60935 -17.94378 -17.40725 -16.93728 -16.87541 -16.63477 -16.29875 -15.85970 -15.66410 -15.46518 -15.06960 -14.81773 -14.58819 -14.49025 -14.08309 -13.67796 -13.52874 -13.40419 -13.11656 -13.00237 -12.69440 -12.62501 -12.58891 -12.55267 -12.45754 -12.26344 -11.93011 -11.51984 -11.33783 -11.28285 -11.10878 -11.03195 -10.82650 -10.78234 -10.51860 -9.95670 -8.62451 -7.85555 -5.28664 0.08381 0.48175 1.38005 1.44530 1.46473 1.86461 2.15361 2.39013 2.48430 2.67384 3.04256 3.31195 3.35163 3.71277 3.76861 3.88283 3.98788 4.03894 4.12340 4.17193 4.23016 4.38444 4.45385 4.55885 4.58700 4.64824 4.71898 4.72538 4.76218 4.87910 4.94520 5.01285 5.13915 5.22837 5.29867 5.30913 5.51751 5.55782 5.62469 5.72088 5.75586 6.00472 6.40631 6.62262 7.06915 7.16494 7.29472 7.90786 8.40393 9.19007 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009487 B = 0.006052 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.748863 B = 4625.516617 C = 6037.247843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.417 6.417 3 C 0.143 3.857 4 C 0.039 3.961 5 N -0.354 5.354 6 O 0.114 5.886 7 C 0.028 3.972 8 C -0.263 4.263 9 C 0.589 3.411 10 O -0.576 6.576 11 N -0.676 5.676 12 C 0.140 3.860 13 H 0.066 0.934 14 C 0.169 3.831 15 N -0.599 5.599 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.048 4.048 19 N -0.932 5.932 20 Si 0.946 3.054 21 H -0.289 1.289 22 H -0.305 1.305 23 H -0.267 1.267 24 C 0.134 3.866 25 C -0.116 4.116 26 C -0.087 4.087 27 H 0.075 0.925 28 C -0.135 4.135 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.278 0.722 35 H 0.408 0.592 36 H -0.003 1.003 37 H 0.047 0.953 38 H 0.243 0.757 39 H 0.010 0.990 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.262 14.034 7.132 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.336 6.336 3 C 0.066 3.934 4 C -0.123 4.123 5 N -0.059 5.059 6 O 0.050 5.950 7 C -0.053 4.053 8 C -0.271 4.271 9 C 0.376 3.624 10 O -0.457 6.457 11 N -0.327 5.327 12 C 0.034 3.966 13 H 0.084 0.916 14 C 0.042 3.958 15 N -0.322 5.322 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.244 4.244 19 N -0.578 5.578 20 Si 0.776 3.224 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.193 1.193 24 C 0.010 3.990 25 C -0.154 4.154 26 C -0.106 4.106 27 H 0.093 0.907 28 C -0.193 4.193 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.294 0.706 35 H 0.246 0.754 36 H 0.014 0.986 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.028 0.972 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.217 13.840 8.175 17.235 hybrid contribution -0.880 -1.203 -0.463 1.561 sum 5.337 12.637 7.713 15.738 Atomic orbital electron populations 1.22945 0.78425 1.03911 1.01363 1.87900 1.22428 1.27587 1.95690 1.20607 0.84228 0.85700 1.02846 1.24630 0.98127 1.02067 0.87460 1.73605 0.90165 1.18535 1.23610 1.84531 1.20639 1.65803 1.24007 1.27190 1.00821 0.94619 0.82691 1.22359 0.94306 1.15481 0.94909 1.17044 0.85341 0.76156 0.83908 1.90739 1.20201 1.52187 1.82564 1.45447 1.09313 1.72365 1.05533 1.21507 0.98172 0.97156 0.79804 0.91630 1.20893 0.89858 0.88742 0.96347 1.44163 1.08002 1.20212 1.59810 1.19380 0.95056 0.98043 1.25006 0.90914 1.25613 0.98225 1.00178 1.00345 1.70142 1.04597 1.44488 1.38585 0.85648 0.76347 0.80225 0.80141 1.21558 1.23152 1.19259 1.21169 0.88594 0.95185 0.94096 1.21971 0.97126 0.94401 1.01946 1.21278 0.94052 0.96107 0.99154 0.90659 1.21769 1.01760 0.93804 1.01944 0.93572 0.88951 0.91217 0.89195 0.90402 0.70636 0.75444 0.98555 0.93448 0.94790 0.97162 0.92266 0.91287 0.88959 0.90537 0.93359 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.42 -15.27 10.69 -148.98 -1.59 -16.87 16 3 C 0.14 4.57 6.19 71.24 0.44 5.01 16 4 C 0.04 1.30 7.21 45.16 0.33 1.63 16 5 N -0.35 -10.78 12.01 -44.78 -0.54 -11.31 16 6 O 0.11 2.80 11.06 76.96 0.85 3.65 16 7 C 0.03 0.61 11.85 67.61 0.80 1.41 16 8 C -0.26 -8.32 6.47 -18.74 -0.12 -8.44 16 9 C 0.59 22.06 7.78 86.66 0.67 22.73 16 10 O -0.58 -26.55 15.36 -4.04 -0.06 -26.61 16 11 N -0.68 -21.70 4.25 -445.46 -1.89 -23.59 16 12 C 0.14 4.98 2.24 45.07 0.10 5.08 16 13 H 0.07 2.51 7.58 -2.39 -0.02 2.49 16 14 C 0.17 8.11 4.91 86.36 0.42 8.54 16 15 N -0.60 -27.85 2.91 -699.12 -2.04 -29.89 16 16 C -0.24 -12.91 9.59 84.03 0.81 -12.11 16 17 H 0.07 3.66 7.89 -2.91 -0.02 3.63 16 18 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 19 N -0.93 -57.58 11.19 21.65 0.24 -57.33 16 20 Si 0.95 47.30 29.59 68.60 2.03 49.33 16 21 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 22 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 C 0.13 4.79 6.51 86.36 0.56 5.36 16 25 C -0.12 -2.85 5.20 30.67 0.16 -2.69 16 26 C -0.09 -2.27 2.48 -10.77 -0.03 -2.29 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 C -0.14 -2.57 9.05 71.98 0.65 -1.92 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.59 7.12 -2.39 -0.02 2.57 16 34 H 0.28 2.62 7.68 -2.91 -0.02 2.60 16 35 H 0.41 10.19 5.82 -92.71 -0.54 9.65 16 36 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.05 2.79 6.03 -2.39 -0.01 2.77 16 38 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.06 2.04 7.94 -2.39 -0.02 2.02 16 41 H 0.07 1.52 6.41 -2.39 -0.02 1.50 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 1.05 7.54 -2.39 -0.02 1.04 16 Total: -1.00 -79.56 367.52 3.93 -75.63 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.47 Total: 14.98 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 6.46 Total: 22.01 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -4.23 Total: -122.12 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.80 Total: -39.82 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -79.56 3.93 -75.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968532415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.554 kcal (2) G-P(sol) polarization free energy of solvation -79.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds