Wall clock time and date at job start Tue Mar 31 2020 14:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99748 * 2 1 4 4 C 1.50703 * 109.47373 * 180.02562 * 3 2 1 5 5 N 1.30011 * 127.33093 * 269.95841 * 4 3 2 6 6 O 1.20663 * 112.29948 * 180.02562 * 5 4 3 7 7 C 1.33490 * 113.15482 * 359.71813 * 6 5 4 8 8 C 1.37359 * 106.34395 * 0.45126 * 7 6 5 9 9 C 1.47397 * 128.56847 * 179.85802 * 8 7 6 10 10 O 1.21613 * 120.00466 * 179.67792 * 9 8 7 11 11 N 1.34776 * 120.00000 * 359.67492 * 9 8 7 12 12 C 1.46495 * 119.99984 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.49954 * 324.92852 * 12 11 9 14 14 C 1.53193 * 109.50055 * 84.99737 * 12 11 9 15 15 N 1.46932 * 108.77300 * 174.61487 * 14 12 11 16 16 C 1.36943 * 120.62677 * 126.41734 * 15 14 12 17 17 H 1.07997 * 119.99795 * 207.66483 * 16 15 14 18 18 C 1.38810 * 119.99973 * 27.65952 * 16 15 14 19 19 N 1.31620 * 120.00304 * 17.36784 * 18 16 15 20 20 Si 1.86807 * 119.99906 * 197.36876 * 18 16 15 21 21 H 1.48498 * 109.46906 * 60.00365 * 20 18 16 22 22 H 1.48501 * 109.46786 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46618 * 300.00052 * 20 18 16 24 24 C 1.46925 * 118.74385 * 306.39277 * 15 14 12 25 25 C 1.53188 * 108.89010 * 53.53567 * 24 15 14 26 26 C 1.53048 * 109.52366 * 204.85453 * 12 11 9 27 27 H 1.09001 * 109.45322 * 298.66983 * 26 12 11 28 28 C 1.52999 * 109.45969 * 58.64190 * 26 12 11 29 29 H 1.09005 * 109.46936 * 299.99516 * 1 2 3 30 30 H 1.08993 * 109.47382 * 59.99977 * 1 2 3 31 31 H 1.09002 * 109.46636 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47104 * 60.00348 * 3 2 1 33 33 H 1.09001 * 109.47399 * 300.00506 * 3 2 1 34 34 H 1.07998 * 126.82999 * 180.30478 * 7 6 5 35 35 H 0.96999 * 119.99559 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.58442 * 54.83528 * 14 12 11 37 37 H 1.08997 * 109.58823 * 294.40101 * 14 12 11 38 38 H 0.96993 * 120.00122 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.58967 * 173.39751 * 24 15 14 40 40 H 1.08996 * 109.58350 * 293.68027 * 24 15 14 41 41 H 1.09001 * 109.50151 * 65.39163 * 25 24 15 42 42 H 1.09004 * 109.49698 * 185.48740 * 25 24 15 43 43 H 1.09000 * 109.46742 * 60.00436 * 28 26 12 44 44 H 1.08998 * 109.46588 * 180.02562 * 28 26 12 45 45 H 1.09003 * 109.47099 * 300.00052 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2989 1.1250 1.0328 6 8 5.4605 1.0334 0.7194 7 6 5.6475 1.0122 -0.6022 8 6 4.4014 1.1163 -1.1706 9 6 4.0428 1.1441 -2.6000 10 8 2.8767 1.2359 -2.9328 11 7 5.0073 1.0679 -3.5383 12 6 4.6509 1.0961 -4.9590 13 1 3.7029 0.5788 -5.1066 14 6 4.5181 2.5496 -5.4242 15 7 4.2889 2.5626 -6.8754 16 6 3.2172 3.2294 -7.4065 17 1 2.7872 2.9025 -8.3417 18 6 2.6834 4.3255 -6.7427 19 7 3.3837 4.9351 -5.8098 20 14 0.9711 4.9355 -7.1736 21 1 -0.0158 3.8530 -6.9298 22 1 0.6370 6.1101 -6.3287 23 1 0.9314 5.3286 -8.6050 24 6 5.2315 1.8470 -7.7461 25 6 5.3597 0.4013 -7.2561 26 6 5.7440 0.4014 -5.7744 27 1 6.6864 0.9340 -5.6461 28 6 5.9033 -1.0408 -5.2891 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 6.5912 0.9319 -1.1213 35 1 5.9374 0.9951 -3.2729 36 1 5.4353 3.0920 -5.1943 37 1 3.6759 3.0201 -4.9170 38 1 3.0109 5.7012 -5.3463 39 1 4.8600 1.8540 -8.7708 40 1 6.2061 2.3336 -7.7075 41 1 4.4062 -0.1116 -7.3825 42 1 6.1287 -0.1118 -7.8336 43 1 4.9609 -1.5732 -5.4169 44 1 6.6821 -1.5354 -5.8694 45 1 6.1808 -1.0408 -4.2349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968532416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:10 Heat of formation + Delta-G solvation = 2.774147 kcal Electronic energy + Delta-G solvation = -28499.507147 eV Core-core repulsion = 24521.399850 eV Total energy + Delta-G solvation = -3978.107298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.03568 -39.58827 -37.99281 -37.52728 -34.42162 -34.02506 -33.27717 -32.08020 -30.98197 -29.02593 -28.29689 -27.38709 -25.83418 -24.76106 -24.00215 -22.18833 -21.41315 -21.07245 -20.16428 -19.50947 -18.16934 -17.88241 -16.82704 -16.74175 -16.32301 -15.85975 -15.58334 -15.22127 -14.90616 -14.41472 -14.22298 -13.76820 -13.72274 -13.53882 -13.33318 -13.02433 -12.61484 -12.45116 -12.42716 -12.06719 -11.70970 -11.63851 -11.61574 -11.49614 -10.92020 -10.73027 -10.69314 -10.48656 -10.24426 -10.20681 -10.08343 -9.93772 -9.80471 -9.79880 -9.58479 -9.49683 -8.61185 -8.44205 -6.68264 -5.77707 -3.20563 1.03773 1.57194 2.83256 3.34607 3.40533 3.43686 3.47267 3.49718 3.68460 4.06361 4.35584 4.52492 4.77314 4.96402 5.11502 5.13386 5.20509 5.22409 5.31223 5.35925 5.38104 5.48902 5.52621 5.57070 5.61897 5.77561 5.87610 5.95901 5.99527 6.08342 6.21368 6.34796 6.42683 6.47926 6.68925 6.72214 6.86117 6.94012 6.98904 7.25112 7.68956 7.77044 7.83407 8.05394 8.45047 8.51179 9.21005 9.85049 10.39501 11.30392 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.004473 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.049036 B = 6258.745123 C = 7724.471564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.141 3.859 4 C 0.065 3.935 5 N -0.342 5.342 6 O 0.103 5.897 7 C -0.017 4.017 8 C -0.225 4.225 9 C 0.588 3.412 10 O -0.515 6.515 11 N -0.710 5.710 12 C 0.125 3.875 13 H 0.085 0.915 14 C 0.166 3.834 15 N -0.587 5.587 16 C -0.257 4.257 17 H 0.066 0.934 18 C 0.008 3.992 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.142 3.858 25 C -0.125 4.125 26 C -0.092 4.092 27 H 0.067 0.933 28 C -0.144 4.144 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.227 0.773 35 H 0.390 0.610 36 H 0.017 0.983 37 H 0.096 0.904 38 H 0.254 0.746 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -10.329 9.815 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.064 3.936 4 C -0.098 4.098 5 N -0.048 5.048 6 O 0.040 5.960 7 C -0.099 4.099 8 C -0.232 4.232 9 C 0.373 3.627 10 O -0.391 6.391 11 N -0.360 5.360 12 C 0.020 3.980 13 H 0.103 0.897 14 C 0.039 3.961 15 N -0.310 5.310 16 C -0.387 4.387 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.543 5.543 20 Si 0.731 3.269 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.016 3.984 25 C -0.165 4.165 26 C -0.111 4.111 27 H 0.086 0.914 28 C -0.202 4.202 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.244 0.756 35 H 0.223 0.777 36 H 0.035 0.965 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.391 -10.242 10.943 15.619 hybrid contribution -0.493 0.581 -0.838 1.133 sum 3.898 -9.662 10.105 14.514 Atomic orbital electron populations 1.22763 0.80114 1.02962 1.00405 1.87879 1.20292 1.26413 1.95558 1.20591 0.84180 0.86088 1.02771 1.24344 0.97433 1.01199 0.86812 1.73645 0.89535 1.18013 1.23587 1.84559 1.21631 1.66533 1.23304 1.26368 1.00328 0.99410 0.83792 1.22534 0.92585 1.11965 0.96131 1.16748 0.85901 0.77400 0.82658 1.90840 1.18296 1.48440 1.81497 1.45873 1.08639 1.74374 1.07104 1.22064 0.97934 1.01376 0.76596 0.89722 1.21109 1.01116 0.89140 0.84734 1.43946 1.27425 1.59223 1.00424 1.19106 1.05501 1.06770 1.07277 0.91620 1.25012 0.98934 0.95735 0.99471 1.69999 1.35649 1.21120 1.27562 0.86386 0.84897 0.77964 0.77646 1.20870 1.21640 1.20869 1.20958 0.93093 0.89865 0.94522 1.22074 1.00707 0.99804 0.93920 1.21312 0.98414 0.95174 0.96214 0.91446 1.21856 1.01418 0.96678 1.00237 0.94061 0.93194 0.89420 0.91496 0.88946 0.75644 0.77690 0.96465 0.88628 0.93606 0.92599 0.96417 0.92079 0.92514 0.92857 0.93061 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.85 10.69 -35.23 -0.38 -6.22 16 3 C 0.14 2.07 6.19 36.01 0.22 2.30 16 4 C 0.06 0.98 7.21 -79.77 -0.58 0.41 16 5 N -0.34 -4.89 12.01 34.78 0.42 -4.47 16 6 O 0.10 1.21 11.06 18.66 0.21 1.42 16 7 C -0.02 -0.17 11.85 30.41 0.36 0.19 16 8 C -0.22 -3.23 6.47 -102.89 -0.67 -3.90 16 9 C 0.59 10.21 7.78 -12.53 -0.10 10.11 16 10 O -0.52 -11.22 15.36 5.27 0.08 -11.13 16 11 N -0.71 -10.80 4.37 -54.77 -0.24 -11.03 16 12 C 0.13 2.31 2.07 -67.81 -0.14 2.17 16 13 H 0.08 1.82 7.58 -51.93 -0.39 1.42 16 14 C 0.17 3.90 4.89 -3.71 -0.02 3.88 16 15 N -0.59 -14.53 3.00 -172.32 -0.52 -15.04 16 16 C -0.26 -7.10 9.59 -15.06 -0.14 -7.24 16 17 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 18 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 19 N -0.90 -26.40 11.19 55.49 0.62 -25.78 16 20 Si 0.90 22.24 29.59 -169.99 -5.03 17.21 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.14 2.85 6.51 -3.71 -0.02 2.82 16 25 C -0.13 -2.02 5.37 -26.60 -0.14 -2.17 16 26 C -0.09 -1.38 2.27 -90.56 -0.21 -1.59 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 C -0.14 -1.76 9.02 37.16 0.34 -1.43 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.48 7.11 -51.93 -0.37 1.11 16 34 H 0.23 1.07 7.68 -52.49 -0.40 0.67 16 35 H 0.39 4.34 7.49 -40.82 -0.31 4.04 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 2.67 6.04 -51.93 -0.31 2.36 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.53 7.36 -51.93 -0.38 0.14 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -34.47 370.66 -6.10 -40.56 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.78 Total: 1.72 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.07 Total: 7.19 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.28 Total: -56.33 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.09 Total: -15.94 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.47 -6.10 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968532416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.339 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds