Wall clock time and date at job start Tue Mar 31 2020 14:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99748 * 2 1 4 4 C 1.50703 * 109.47373 * 180.02562 * 3 2 1 5 5 N 1.30011 * 127.33093 * 269.95841 * 4 3 2 6 6 O 1.20663 * 112.29948 * 180.02562 * 5 4 3 7 7 C 1.33490 * 113.15482 * 359.71813 * 6 5 4 8 8 C 1.37359 * 106.34395 * 0.45126 * 7 6 5 9 9 C 1.47397 * 128.56847 * 179.85802 * 8 7 6 10 10 O 1.21613 * 120.00466 * 179.67792 * 9 8 7 11 11 N 1.34776 * 120.00000 * 359.67492 * 9 8 7 12 12 C 1.46495 * 119.99984 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.49954 * 324.92852 * 12 11 9 14 14 C 1.53193 * 109.50055 * 84.99737 * 12 11 9 15 15 N 1.46932 * 108.77300 * 174.61487 * 14 12 11 16 16 C 1.36943 * 120.62677 * 126.41734 * 15 14 12 17 17 H 1.07997 * 119.99795 * 207.66483 * 16 15 14 18 18 C 1.38810 * 119.99973 * 27.65952 * 16 15 14 19 19 N 1.31620 * 120.00304 * 17.36784 * 18 16 15 20 20 Si 1.86807 * 119.99906 * 197.36876 * 18 16 15 21 21 H 1.48498 * 109.46906 * 60.00365 * 20 18 16 22 22 H 1.48501 * 109.46786 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46618 * 300.00052 * 20 18 16 24 24 C 1.46925 * 118.74385 * 306.39277 * 15 14 12 25 25 C 1.53188 * 108.89010 * 53.53567 * 24 15 14 26 26 C 1.53048 * 109.52366 * 204.85453 * 12 11 9 27 27 H 1.09001 * 109.45322 * 298.66983 * 26 12 11 28 28 C 1.52999 * 109.45969 * 58.64190 * 26 12 11 29 29 H 1.09005 * 109.46936 * 299.99516 * 1 2 3 30 30 H 1.08993 * 109.47382 * 59.99977 * 1 2 3 31 31 H 1.09002 * 109.46636 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47104 * 60.00348 * 3 2 1 33 33 H 1.09001 * 109.47399 * 300.00506 * 3 2 1 34 34 H 1.07998 * 126.82999 * 180.30478 * 7 6 5 35 35 H 0.96999 * 119.99559 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.58442 * 54.83528 * 14 12 11 37 37 H 1.08997 * 109.58823 * 294.40101 * 14 12 11 38 38 H 0.96993 * 120.00122 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.58967 * 173.39751 * 24 15 14 40 40 H 1.08996 * 109.58350 * 293.68027 * 24 15 14 41 41 H 1.09001 * 109.50151 * 65.39163 * 25 24 15 42 42 H 1.09004 * 109.49698 * 185.48740 * 25 24 15 43 43 H 1.09000 * 109.46742 * 60.00436 * 28 26 12 44 44 H 1.08998 * 109.46588 * 180.02562 * 28 26 12 45 45 H 1.09003 * 109.47099 * 300.00052 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2989 1.1250 1.0328 6 8 5.4605 1.0334 0.7194 7 6 5.6475 1.0122 -0.6022 8 6 4.4014 1.1163 -1.1706 9 6 4.0428 1.1441 -2.6000 10 8 2.8767 1.2359 -2.9328 11 7 5.0073 1.0679 -3.5383 12 6 4.6509 1.0961 -4.9590 13 1 3.7029 0.5788 -5.1066 14 6 4.5181 2.5496 -5.4242 15 7 4.2889 2.5626 -6.8754 16 6 3.2172 3.2294 -7.4065 17 1 2.7872 2.9025 -8.3417 18 6 2.6834 4.3255 -6.7427 19 7 3.3837 4.9351 -5.8098 20 14 0.9711 4.9355 -7.1736 21 1 -0.0158 3.8530 -6.9298 22 1 0.6370 6.1101 -6.3287 23 1 0.9314 5.3286 -8.6050 24 6 5.2315 1.8470 -7.7461 25 6 5.3597 0.4013 -7.2561 26 6 5.7440 0.4014 -5.7744 27 1 6.6864 0.9340 -5.6461 28 6 5.9033 -1.0408 -5.2891 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 6.5912 0.9319 -1.1213 35 1 5.9374 0.9951 -3.2729 36 1 5.4353 3.0920 -5.1943 37 1 3.6759 3.0201 -4.9170 38 1 3.0109 5.7012 -5.3463 39 1 4.8600 1.8540 -8.7708 40 1 6.2061 2.3336 -7.7075 41 1 4.4062 -0.1116 -7.3825 42 1 6.1287 -0.1118 -7.8336 43 1 4.9609 -1.5732 -5.4169 44 1 6.6821 -1.5354 -5.8694 45 1 6.1808 -1.0408 -4.2349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968532416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:09 Heat of formation + Delta-G solvation = -22.579507 kcal Electronic energy + Delta-G solvation = -28500.606564 eV Core-core repulsion = 24521.399850 eV Total energy + Delta-G solvation = -3979.206715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.08940 -41.00903 -39.23390 -38.89629 -36.11453 -35.12692 -34.77026 -33.24905 -32.74563 -30.53338 -29.39545 -28.95424 -26.87706 -26.16041 -25.60317 -23.64163 -22.65007 -22.44881 -21.51615 -20.97497 -19.30432 -18.93417 -18.75109 -17.88326 -17.39675 -17.21696 -16.89437 -16.71531 -16.30711 -15.90507 -15.65086 -15.34221 -15.23741 -14.89370 -14.75805 -14.36243 -14.08430 -13.69714 -13.51362 -13.41386 -13.26970 -13.04303 -12.72157 -12.61773 -12.58606 -12.55817 -12.35037 -12.18393 -11.90476 -11.61172 -11.51797 -11.30705 -11.19092 -11.08730 -10.85223 -10.79931 -10.54273 -10.10106 -8.68650 -7.90011 -5.34570 0.06189 0.47474 1.39703 1.45113 1.49622 1.83191 2.14203 2.21507 2.48394 2.61770 3.01551 3.26196 3.34175 3.70111 3.75101 3.83716 3.95905 4.03125 4.10760 4.19807 4.20985 4.41134 4.46699 4.49780 4.58461 4.60041 4.66128 4.70837 4.73700 4.75864 4.95356 5.01267 5.14916 5.21445 5.22851 5.31057 5.43390 5.49100 5.55072 5.62414 5.80019 5.94933 6.35903 6.55697 7.07560 7.11843 7.24443 7.85845 8.33836 9.14474 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.004473 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.049036 B = 6258.745123 C = 7724.471564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.141 3.859 4 C 0.040 3.960 5 N -0.354 5.354 6 O 0.117 5.883 7 C 0.037 3.963 8 C -0.265 4.265 9 C 0.588 3.412 10 O -0.573 6.573 11 N -0.692 5.692 12 C 0.142 3.858 13 H 0.049 0.951 14 C 0.177 3.823 15 N -0.609 5.609 16 C -0.265 4.265 17 H 0.067 0.933 18 C -0.047 4.047 19 N -0.929 5.929 20 Si 0.957 3.043 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.267 1.267 24 C 0.136 3.864 25 C -0.116 4.116 26 C -0.084 4.084 27 H 0.086 0.914 28 C -0.136 4.136 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.287 0.713 35 H 0.415 0.585 36 H 0.004 0.996 37 H 0.043 0.957 38 H 0.247 0.753 39 H 0.053 0.947 40 H 0.024 0.976 41 H 0.047 0.953 42 H 0.097 0.903 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.156 -12.258 10.207 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C 0.064 3.936 4 C -0.121 4.121 5 N -0.058 5.058 6 O 0.053 5.947 7 C -0.045 4.045 8 C -0.273 4.273 9 C 0.375 3.625 10 O -0.452 6.452 11 N -0.344 5.344 12 C 0.036 3.964 13 H 0.067 0.933 14 C 0.050 3.950 15 N -0.333 5.333 16 C -0.395 4.395 17 H 0.084 0.916 18 C -0.243 4.243 19 N -0.574 5.574 20 Si 0.786 3.214 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.192 1.192 24 C 0.011 3.989 25 C -0.156 4.156 26 C -0.103 4.103 27 H 0.104 0.896 28 C -0.194 4.194 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.302 0.698 35 H 0.252 0.748 36 H 0.022 0.978 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.116 0.884 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.182 -12.205 11.338 18.140 hybrid contribution -1.278 1.168 -0.972 1.985 sum 5.904 -11.037 10.366 16.252 Atomic orbital electron populations 1.22972 0.78485 1.04357 1.00978 1.87834 1.22228 1.26769 1.95656 1.20527 0.84726 0.85991 1.02338 1.24521 0.97837 1.02163 0.87626 1.73643 0.90177 1.18519 1.23461 1.84550 1.20539 1.65499 1.24098 1.27310 1.00578 0.94002 0.82572 1.22239 0.94590 1.16213 0.94293 1.17164 0.85295 0.76000 0.84079 1.90815 1.20788 1.51040 1.82602 1.45569 1.09720 1.73567 1.05545 1.21535 0.98330 0.97701 0.78809 0.93299 1.20819 0.98048 0.91944 0.84171 1.44228 1.27996 1.59562 1.01507 1.19451 1.06455 1.06470 1.07135 0.91574 1.25714 1.02062 0.96484 1.00034 1.70145 1.36870 1.21559 1.28861 0.85490 0.80952 0.77009 0.77998 1.21277 1.22034 1.19247 1.21173 0.92048 0.91858 0.93845 1.21981 1.01537 0.96828 0.95235 1.21278 0.97238 0.97142 0.94640 0.89584 1.21788 1.01716 0.93986 1.01862 0.91881 0.94207 0.87647 0.89721 0.91472 0.69775 0.74778 0.97793 0.93839 0.94426 0.92876 0.95813 0.93415 0.88435 0.94258 0.90290 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.41 -12.81 10.69 -148.98 -1.59 -14.40 16 3 C 0.14 4.37 6.19 71.24 0.44 4.81 16 4 C 0.04 1.23 7.21 45.16 0.33 1.56 16 5 N -0.35 -9.60 12.01 -44.78 -0.54 -10.14 16 6 O 0.12 2.38 11.06 77.00 0.85 3.23 16 7 C 0.04 0.59 11.85 67.61 0.80 1.40 16 8 C -0.27 -7.38 6.47 -18.75 -0.12 -7.50 16 9 C 0.59 20.70 7.78 86.65 0.67 21.38 16 10 O -0.57 -26.67 15.36 -4.07 -0.06 -26.73 16 11 N -0.69 -20.29 4.37 -445.45 -1.95 -22.24 16 12 C 0.14 5.25 2.07 45.07 0.09 5.34 16 13 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 14 C 0.18 8.61 4.89 86.36 0.42 9.03 16 15 N -0.61 -30.83 3.00 -699.09 -2.10 -32.92 16 16 C -0.26 -15.07 9.59 84.03 0.81 -14.27 16 17 H 0.07 3.66 7.89 -2.91 -0.02 3.63 16 18 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 19 N -0.93 -57.04 11.19 21.65 0.24 -56.79 16 20 Si 0.96 47.37 29.59 68.60 2.03 49.40 16 21 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 24 C 0.14 5.32 6.51 86.36 0.56 5.89 16 25 C -0.12 -3.47 5.37 30.68 0.16 -3.31 16 26 C -0.08 -2.28 2.27 -10.75 -0.02 -2.30 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 28 C -0.14 -2.75 9.02 71.98 0.65 -2.10 16 29 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.07 2.37 7.11 -2.39 -0.02 2.35 16 34 H 0.29 0.76 7.68 -2.91 -0.02 0.73 16 35 H 0.41 7.75 7.49 -92.71 -0.69 7.05 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.04 2.57 6.04 -2.39 -0.01 2.56 16 38 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.12 7.36 -2.39 -0.02 1.10 16 Total: -1.00 -82.90 370.66 3.66 -79.24 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.31 Total: 11.87 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 6.46 Total: 19.48 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -4.34 Total: -122.09 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.80 Total: -37.90 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -82.90 3.66 -79.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968532416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.661 kcal (2) G-P(sol) polarization free energy of solvation -82.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds