Wall clock time and date at job start Tue Mar 31 2020 14:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99898 * 2 1 4 4 C 1.50696 * 109.46984 * 179.97438 * 3 2 1 5 5 N 1.30013 * 127.33441 * 269.95733 * 4 3 2 6 6 O 1.20658 * 112.30408 * 180.02562 * 5 4 3 7 7 C 1.33501 * 113.15440 * 359.70890 * 6 5 4 8 8 C 1.37365 * 106.33710 * 0.45666 * 7 6 5 9 9 C 1.47401 * 128.55885 * 179.85329 * 8 7 6 10 10 O 1.21608 * 119.99546 * 179.68086 * 9 8 7 11 11 N 1.34778 * 120.00152 * 359.67465 * 9 8 7 12 12 C 1.46494 * 119.99706 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.50331 * 325.00300 * 12 11 9 14 14 C 1.53191 * 109.52307 * 85.08612 * 12 11 9 15 15 N 1.46927 * 108.77543 * 65.33277 * 14 12 11 16 16 C 1.36940 * 120.62863 * 233.58621 * 15 14 12 17 17 H 1.08000 * 120.00100 * 152.63452 * 16 15 14 18 18 C 1.38813 * 120.00226 * 332.63649 * 16 15 14 19 19 N 1.31612 * 120.00182 * 159.35340 * 18 16 15 20 20 Si 1.86807 * 119.99804 * 339.34791 * 18 16 15 21 21 H 1.48504 * 109.46838 * 92.91807 * 20 18 16 22 22 H 1.48495 * 109.47141 * 212.92011 * 20 18 16 23 23 H 1.48504 * 109.47085 * 332.92567 * 20 18 16 24 24 C 1.46926 * 118.74110 * 53.60584 * 15 14 12 25 25 C 1.53191 * 108.77462 * 306.39511 * 24 15 14 26 26 C 1.53037 * 109.31484 * 54.63431 * 25 24 15 27 27 H 1.09006 * 109.44921 * 58.64775 * 26 25 24 28 28 C 1.52996 * 109.46226 * 178.61473 * 26 25 24 29 29 H 1.09001 * 109.47303 * 300.00648 * 1 2 3 30 30 H 1.09005 * 109.46715 * 60.00238 * 1 2 3 31 31 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47154 * 59.99414 * 3 2 1 33 33 H 1.09002 * 109.46852 * 299.99715 * 3 2 1 34 34 H 1.07996 * 126.83084 * 180.31723 * 7 6 5 35 35 H 0.96998 * 120.00192 * 0.02562 * 11 9 8 36 36 H 1.09011 * 109.58859 * 185.11643 * 14 12 11 37 37 H 1.08993 * 109.59048 * 305.54268 * 14 12 11 38 38 H 0.97006 * 120.00112 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.58725 * 186.60479 * 24 15 14 40 40 H 1.08997 * 109.69963 * 66.25133 * 24 15 14 41 41 H 1.08999 * 109.49532 * 294.68216 * 25 24 15 42 42 H 1.09004 * 109.49659 * 174.58422 * 25 24 15 43 43 H 1.08996 * 109.47657 * 180.02562 * 28 26 25 44 44 H 1.09005 * 109.46899 * 300.06794 * 28 26 25 45 45 H 1.09005 * 109.47315 * 60.06276 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2982 1.1252 1.0347 6 8 5.4600 1.0334 0.7223 7 6 5.6480 1.0115 -0.5992 8 6 4.4023 1.1154 -1.1686 9 6 4.0449 1.1426 -2.5984 10 8 2.8791 1.2345 -2.9320 11 7 5.0102 1.0659 -3.5358 12 6 4.6549 1.0923 -4.9568 13 1 3.7066 0.5756 -5.1045 14 6 4.5237 2.5451 -5.4247 15 7 5.8414 3.1897 -5.3410 16 6 6.0023 4.3615 -4.6511 17 1 6.9598 4.6038 -4.2141 18 6 4.9348 5.2381 -4.5132 19 7 4.9387 6.1334 -3.5486 20 14 3.4925 5.1468 -5.6970 21 1 2.4407 4.2660 -5.1286 22 1 2.9379 6.5081 -5.9073 23 1 3.9526 4.5935 -6.9960 24 6 6.9831 2.5532 -6.0120 25 6 7.0866 1.1004 -5.5375 26 6 5.7483 0.3954 -5.7698 27 1 5.4953 0.4369 -6.8293 28 6 5.8584 -1.0655 -5.3289 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 6.5920 0.9306 -1.1175 35 1 5.9400 0.9924 -3.2697 36 1 4.1714 2.5665 -6.4561 37 1 3.8174 3.0731 -4.7842 38 1 4.1929 6.7462 -3.4526 39 1 7.8994 3.0865 -5.7589 40 1 6.8338 2.5753 -7.0915 41 1 7.3283 1.0811 -4.4748 42 1 7.8692 0.5893 -6.0984 43 1 4.9054 -1.5679 -5.4947 44 1 6.6371 -1.5620 -5.9079 45 1 6.1109 -1.1072 -4.2694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968532417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:13 Heat of formation + Delta-G solvation = 9.619817 kcal Electronic energy + Delta-G solvation = -29190.341380 eV Core-core repulsion = 25212.530933 eV Total energy + Delta-G solvation = -3977.810447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.85868 -39.80920 -38.01407 -37.61719 -34.36756 -33.88685 -33.13088 -31.90466 -31.40038 -29.68074 -28.30311 -27.62360 -25.79215 -24.69663 -23.89711 -22.72045 -21.34700 -21.18782 -20.64352 -18.92476 -18.26813 -17.71158 -16.90664 -16.71805 -16.26014 -15.76625 -15.45706 -15.35497 -15.15128 -14.52207 -14.36178 -14.10489 -13.70269 -13.44715 -13.40720 -13.30008 -12.83414 -12.51650 -12.34967 -12.20610 -12.05725 -11.71888 -11.58747 -11.53552 -11.38865 -11.18618 -10.66842 -10.58748 -10.31740 -10.10277 -9.99461 -9.90177 -9.80409 -9.62829 -9.56557 -9.45482 -8.80159 -8.46789 -6.99213 -5.97353 -3.33335 1.21560 1.72120 2.98968 3.37850 3.44541 3.49020 3.49809 3.52428 3.79065 4.20166 4.48343 4.53247 4.89489 4.92443 4.94543 5.04963 5.11825 5.15077 5.22607 5.28482 5.37971 5.39919 5.41774 5.60690 5.65570 5.67713 5.69010 5.80560 5.89356 5.91673 6.02482 6.06764 6.15321 6.26485 6.32217 6.45036 6.55438 6.63943 6.75331 6.92216 7.03313 7.83395 7.93099 8.21327 8.29050 8.55285 8.90341 9.70106 10.06477 11.18133 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010972 B = 0.005208 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.361294 B = 5375.094893 C = 6088.748211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.143 3.857 4 C 0.064 3.936 5 N -0.343 5.343 6 O 0.103 5.897 7 C -0.009 4.009 8 C -0.224 4.224 9 C 0.597 3.403 10 O -0.534 6.534 11 N -0.691 5.691 12 C 0.137 3.863 13 H 0.083 0.917 14 C 0.112 3.888 15 N -0.601 5.601 16 C -0.261 4.261 17 H 0.085 0.915 18 C 0.029 3.971 19 N -0.905 5.905 20 Si 0.875 3.125 21 H -0.284 1.284 22 H -0.304 1.304 23 H -0.271 1.271 24 C 0.145 3.855 25 C -0.130 4.130 26 C -0.095 4.095 27 H 0.080 0.920 28 C -0.144 4.144 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.226 0.774 35 H 0.396 0.604 36 H 0.033 0.967 37 H 0.081 0.919 38 H 0.262 0.738 39 H 0.063 0.937 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -14.587 2.404 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C 0.066 3.934 4 C -0.098 4.098 5 N -0.048 5.048 6 O 0.040 5.960 7 C -0.091 4.091 8 C -0.231 4.231 9 C 0.382 3.618 10 O -0.412 6.412 11 N -0.341 5.341 12 C 0.030 3.970 13 H 0.101 0.899 14 C -0.014 4.014 15 N -0.325 5.325 16 C -0.389 4.389 17 H 0.102 0.898 18 C -0.171 4.171 19 N -0.548 5.548 20 Si 0.705 3.295 21 H -0.211 1.211 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.019 3.981 25 C -0.170 4.170 26 C -0.114 4.114 27 H 0.099 0.901 28 C -0.202 4.202 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.243 0.757 35 H 0.232 0.768 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.630 -14.503 3.540 14.942 hybrid contribution -0.598 0.425 -1.373 1.556 sum -1.228 -14.078 2.167 14.297 Atomic orbital electron populations 1.22745 0.80339 1.02804 1.00320 1.87879 1.20101 1.26631 1.95553 1.20565 0.84335 0.85809 1.02718 1.24264 0.97282 1.01391 0.86897 1.73616 0.89547 1.18050 1.23601 1.84549 1.21557 1.66545 1.23350 1.26348 1.00314 0.98728 0.83674 1.22372 0.92627 1.12232 0.95885 1.16691 0.85596 0.76598 0.82891 1.90758 1.18636 1.50008 1.81788 1.45573 1.09135 1.73450 1.05978 1.21536 0.97719 0.98414 0.79286 0.89909 1.21793 0.89517 0.91531 0.98580 1.44303 1.03381 1.24500 1.60312 1.18817 0.99449 0.94162 1.26504 0.89784 1.25240 0.97904 0.96206 0.97718 1.69822 1.32217 1.22466 1.30275 0.87060 0.83463 0.75730 0.83258 1.21135 1.23193 1.19598 1.20956 0.91656 0.90898 0.94584 1.22084 0.95663 0.98122 1.01085 1.21325 0.95815 0.94268 0.99956 0.90123 1.21840 1.01364 0.95793 1.01184 0.94046 0.93419 0.89513 0.91471 0.89106 0.75729 0.76828 0.94926 0.90063 0.92819 0.91802 0.95901 0.92388 0.92162 0.92918 0.92807 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.01 10.69 -35.23 -0.38 -6.39 16 3 C 0.14 2.27 6.19 36.00 0.22 2.49 16 4 C 0.06 1.10 7.21 -79.77 -0.58 0.52 16 5 N -0.34 -5.57 12.01 34.78 0.42 -5.15 16 6 O 0.10 1.46 11.06 18.63 0.21 1.66 16 7 C -0.01 -0.11 11.85 30.41 0.36 0.25 16 8 C -0.22 -3.71 6.47 -102.89 -0.67 -4.38 16 9 C 0.60 11.09 7.78 -12.53 -0.10 10.99 16 10 O -0.53 -11.59 15.36 5.27 0.08 -11.51 16 11 N -0.69 -11.28 4.25 -54.78 -0.23 -11.51 16 12 C 0.14 2.31 2.24 -67.81 -0.15 2.16 16 13 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 14 C 0.11 2.40 3.80 -3.71 -0.01 2.38 16 15 N -0.60 -13.20 2.69 -172.32 -0.46 -13.66 16 16 C -0.26 -6.94 10.04 -15.06 -0.15 -7.09 16 17 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 18 C 0.03 0.82 5.23 -17.43 -0.09 0.73 16 19 N -0.91 -27.56 13.97 55.49 0.78 -26.78 16 20 Si 0.87 22.69 24.35 -169.99 -4.14 18.55 16 21 H -0.28 -7.45 6.62 56.52 0.37 -7.08 16 22 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 23 H -0.27 -6.80 6.64 56.52 0.38 -6.43 16 24 C 0.15 2.52 6.52 -3.71 -0.02 2.50 16 25 C -0.13 -1.73 5.20 -26.61 -0.14 -1.87 16 26 C -0.09 -1.26 2.48 -90.58 -0.22 -1.48 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 C -0.14 -1.57 9.05 37.16 0.34 -1.23 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.55 7.11 -51.93 -0.37 1.18 16 34 H 0.23 1.81 7.68 -52.49 -0.40 1.41 16 35 H 0.40 5.51 5.82 -40.82 -0.24 5.27 16 36 H 0.03 0.70 7.08 -51.92 -0.37 0.33 16 37 H 0.08 2.04 4.50 -51.93 -0.23 1.81 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.75 6.40 -51.93 -0.33 0.42 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.56 7.54 -51.93 -0.39 0.17 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -34.37 361.08 -4.95 -39.32 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.56 Total: 2.57 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.10 Total: 7.47 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.50 Total: -57.11 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.09 Total: -16.24 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.14 Total: 18.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.37 -4.95 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968532417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.935 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds