Wall clock time and date at job start Tue Mar 31 2020 14:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99898 * 2 1 4 4 C 1.50696 * 109.46984 * 179.97438 * 3 2 1 5 5 N 1.30013 * 127.33441 * 269.95733 * 4 3 2 6 6 O 1.20658 * 112.30408 * 180.02562 * 5 4 3 7 7 C 1.33501 * 113.15440 * 359.70890 * 6 5 4 8 8 C 1.37365 * 106.33710 * 0.45666 * 7 6 5 9 9 C 1.47401 * 128.55885 * 179.85329 * 8 7 6 10 10 O 1.21608 * 119.99546 * 179.68086 * 9 8 7 11 11 N 1.34778 * 120.00152 * 359.67465 * 9 8 7 12 12 C 1.46494 * 119.99706 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.50331 * 325.00300 * 12 11 9 14 14 C 1.53191 * 109.52307 * 85.08612 * 12 11 9 15 15 N 1.46927 * 108.77543 * 65.33277 * 14 12 11 16 16 C 1.36940 * 120.62863 * 233.58621 * 15 14 12 17 17 H 1.08000 * 120.00100 * 152.63452 * 16 15 14 18 18 C 1.38813 * 120.00226 * 332.63649 * 16 15 14 19 19 N 1.31612 * 120.00182 * 159.35340 * 18 16 15 20 20 Si 1.86807 * 119.99804 * 339.34791 * 18 16 15 21 21 H 1.48504 * 109.46838 * 92.91807 * 20 18 16 22 22 H 1.48495 * 109.47141 * 212.92011 * 20 18 16 23 23 H 1.48504 * 109.47085 * 332.92567 * 20 18 16 24 24 C 1.46926 * 118.74110 * 53.60584 * 15 14 12 25 25 C 1.53191 * 108.77462 * 306.39511 * 24 15 14 26 26 C 1.53037 * 109.31484 * 54.63431 * 25 24 15 27 27 H 1.09006 * 109.44921 * 58.64775 * 26 25 24 28 28 C 1.52996 * 109.46226 * 178.61473 * 26 25 24 29 29 H 1.09001 * 109.47303 * 300.00648 * 1 2 3 30 30 H 1.09005 * 109.46715 * 60.00238 * 1 2 3 31 31 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47154 * 59.99414 * 3 2 1 33 33 H 1.09002 * 109.46852 * 299.99715 * 3 2 1 34 34 H 1.07996 * 126.83084 * 180.31723 * 7 6 5 35 35 H 0.96998 * 120.00192 * 0.02562 * 11 9 8 36 36 H 1.09011 * 109.58859 * 185.11643 * 14 12 11 37 37 H 1.08993 * 109.59048 * 305.54268 * 14 12 11 38 38 H 0.97006 * 120.00112 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.58725 * 186.60479 * 24 15 14 40 40 H 1.08997 * 109.69963 * 66.25133 * 24 15 14 41 41 H 1.08999 * 109.49532 * 294.68216 * 25 24 15 42 42 H 1.09004 * 109.49659 * 174.58422 * 25 24 15 43 43 H 1.08996 * 109.47657 * 180.02562 * 28 26 25 44 44 H 1.09005 * 109.46899 * 300.06794 * 28 26 25 45 45 H 1.09005 * 109.47315 * 60.06276 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2982 1.1252 1.0347 6 8 5.4600 1.0334 0.7223 7 6 5.6480 1.0115 -0.5992 8 6 4.4023 1.1154 -1.1686 9 6 4.0449 1.1426 -2.5984 10 8 2.8791 1.2345 -2.9320 11 7 5.0102 1.0659 -3.5358 12 6 4.6549 1.0923 -4.9568 13 1 3.7066 0.5756 -5.1045 14 6 4.5237 2.5451 -5.4247 15 7 5.8414 3.1897 -5.3410 16 6 6.0023 4.3615 -4.6511 17 1 6.9598 4.6038 -4.2141 18 6 4.9348 5.2381 -4.5132 19 7 4.9387 6.1334 -3.5486 20 14 3.4925 5.1468 -5.6970 21 1 2.4407 4.2660 -5.1286 22 1 2.9379 6.5081 -5.9073 23 1 3.9526 4.5935 -6.9960 24 6 6.9831 2.5532 -6.0120 25 6 7.0866 1.1004 -5.5375 26 6 5.7483 0.3954 -5.7698 27 1 5.4953 0.4369 -6.8293 28 6 5.8584 -1.0655 -5.3289 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 6.5920 0.9306 -1.1175 35 1 5.9400 0.9924 -3.2697 36 1 4.1714 2.5665 -6.4561 37 1 3.8174 3.0731 -4.7842 38 1 4.1929 6.7462 -3.4526 39 1 7.8994 3.0865 -5.7589 40 1 6.8338 2.5753 -7.0915 41 1 7.3283 1.0811 -4.4748 42 1 7.8692 0.5893 -6.0984 43 1 4.9054 -1.5679 -5.4947 44 1 6.6371 -1.5620 -5.9079 45 1 6.1109 -1.1072 -4.2694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968532417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:12 Heat of formation + Delta-G solvation = -16.157154 kcal Electronic energy + Delta-G solvation = -29191.459153 eV Core-core repulsion = 25212.530933 eV Total energy + Delta-G solvation = -3978.928220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.07214 -41.20684 -39.31275 -38.90260 -36.03419 -35.11502 -34.51529 -33.35469 -33.05914 -31.07025 -29.44190 -29.05514 -26.86775 -26.08348 -25.47412 -24.10430 -22.82183 -22.43444 -21.88948 -20.38380 -19.48079 -18.92095 -18.72145 -18.00906 -17.38708 -17.27883 -16.96769 -16.69703 -16.38702 -16.05471 -15.82460 -15.31661 -15.10366 -15.00159 -14.92437 -14.55944 -14.36209 -13.82348 -13.64773 -13.59916 -13.42431 -13.14065 -12.87412 -12.61322 -12.59678 -12.49104 -12.41330 -12.17824 -11.81878 -11.65675 -11.36900 -11.30674 -11.18947 -11.10634 -10.84548 -10.80452 -10.74176 -10.04530 -8.86445 -8.17755 -5.45026 0.06180 0.47868 1.27913 1.32804 1.39516 1.83820 2.15330 2.25229 2.39769 2.61357 3.01400 3.06502 3.35195 3.37024 3.72835 3.76475 3.94211 3.96634 4.05096 4.09045 4.20493 4.36408 4.42815 4.47313 4.51862 4.56975 4.62663 4.66760 4.69615 4.73974 4.77871 4.90117 4.94095 5.05796 5.16876 5.23493 5.26053 5.46623 5.50652 5.60019 5.89314 5.95092 6.13560 6.53290 6.93507 7.05603 7.20280 7.65049 8.06082 9.01442 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010972 B = 0.005208 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.361294 B = 5375.094893 C = 6088.748211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.145 3.855 4 C 0.041 3.959 5 N -0.354 5.354 6 O 0.114 5.886 7 C 0.031 3.969 8 C -0.265 4.265 9 C 0.592 3.408 10 O -0.577 6.577 11 N -0.679 5.679 12 C 0.142 3.858 13 H 0.076 0.924 14 C 0.110 3.890 15 N -0.610 5.610 16 C -0.226 4.226 17 H 0.066 0.934 18 C -0.029 4.029 19 N -0.952 5.952 20 Si 0.925 3.075 21 H -0.299 1.299 22 H -0.315 1.315 23 H -0.256 1.256 24 C 0.137 3.863 25 C -0.119 4.119 26 C -0.086 4.086 27 H 0.088 0.912 28 C -0.137 4.137 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.277 0.723 35 H 0.410 0.590 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.255 0.745 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 -17.401 1.604 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C 0.068 3.932 4 C -0.121 4.121 5 N -0.059 5.059 6 O 0.050 5.950 7 C -0.051 4.051 8 C -0.272 4.272 9 C 0.379 3.621 10 O -0.458 6.458 11 N -0.330 5.330 12 C 0.035 3.965 13 H 0.094 0.906 14 C -0.016 4.016 15 N -0.335 5.335 16 C -0.356 4.356 17 H 0.084 0.916 18 C -0.224 4.224 19 N -0.599 5.599 20 Si 0.756 3.244 21 H -0.227 1.227 22 H -0.245 1.245 23 H -0.180 1.180 24 C 0.013 3.987 25 C -0.158 4.158 26 C -0.105 4.105 27 H 0.106 0.894 28 C -0.195 4.195 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.292 0.708 35 H 0.248 0.752 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.661 -17.376 2.703 17.663 hybrid contribution -1.210 1.238 -1.138 2.072 sum 0.451 -16.138 1.565 16.220 Atomic orbital electron populations 1.22991 0.78399 1.04428 1.01021 1.87839 1.22307 1.26465 1.95653 1.20483 0.84378 0.86054 1.02299 1.24559 0.98008 1.02008 0.87512 1.73603 0.90108 1.18617 1.23608 1.84533 1.20691 1.65750 1.24006 1.27169 1.00679 0.94496 0.82729 1.22325 0.94338 1.15629 0.94951 1.17031 0.85330 0.75795 0.83971 1.90730 1.20448 1.52036 1.82595 1.45473 1.09495 1.72535 1.05506 1.21430 0.99483 0.95530 0.80010 0.90593 1.21714 0.88223 0.93900 0.97796 1.44421 1.04983 1.23451 1.60624 1.18836 0.97848 0.94719 1.24171 0.91626 1.25722 1.00263 0.97062 0.99320 1.69925 1.33074 1.24403 1.32502 0.86249 0.81228 0.74510 0.82387 1.22699 1.24460 1.18024 1.21234 0.89490 0.93228 0.94782 1.21999 0.96667 0.95063 1.02081 1.21313 0.94116 0.95506 0.99601 0.89355 1.21776 1.02188 0.93628 1.01870 0.92138 0.93915 0.87442 0.89944 0.91354 0.70762 0.75220 0.94836 0.94377 0.93569 0.91935 0.94961 0.91609 0.88358 0.93239 0.90290 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -12.90 10.69 -148.98 -1.59 -14.49 16 3 C 0.15 4.79 6.19 71.23 0.44 5.23 16 4 C 0.04 1.42 7.21 45.15 0.33 1.75 16 5 N -0.35 -11.27 12.01 -44.78 -0.54 -11.81 16 6 O 0.11 2.97 11.06 76.92 0.85 3.82 16 7 C 0.03 0.70 11.85 67.61 0.80 1.51 16 8 C -0.26 -8.62 6.47 -18.74 -0.12 -8.74 16 9 C 0.59 22.00 7.78 86.66 0.67 22.67 16 10 O -0.58 -26.04 15.36 -4.06 -0.06 -26.10 16 11 N -0.68 -21.02 4.25 -445.47 -1.89 -22.91 16 12 C 0.14 4.55 2.24 45.07 0.10 4.65 16 13 H 0.08 2.58 7.58 -2.39 -0.02 2.56 16 14 C 0.11 4.62 3.80 86.36 0.33 4.95 16 15 N -0.61 -25.91 2.69 -699.09 -1.88 -27.79 16 16 C -0.23 -11.99 10.04 84.03 0.84 -11.14 16 17 H 0.07 3.71 8.06 -2.91 -0.02 3.69 16 18 C -0.03 -1.68 5.23 84.86 0.44 -1.24 16 19 N -0.95 -59.97 13.97 21.65 0.30 -59.67 16 20 Si 0.92 48.60 24.35 68.60 1.67 50.27 16 21 H -0.30 -16.21 6.62 99.48 0.66 -15.55 16 22 H -0.32 -16.93 7.11 99.48 0.71 -16.22 16 23 H -0.26 -12.56 6.64 99.48 0.66 -11.90 16 24 C 0.14 4.30 6.52 86.36 0.56 4.87 16 25 C -0.12 -2.58 5.20 30.67 0.16 -2.42 16 26 C -0.09 -1.94 2.48 -10.77 -0.03 -1.97 16 27 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 28 C -0.14 -2.32 9.05 71.98 0.65 -1.67 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.11 1.94 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.52 7.11 -2.39 -0.02 2.50 16 34 H 0.28 3.04 7.68 -2.91 -0.02 3.02 16 35 H 0.41 10.02 5.82 -92.71 -0.54 9.48 16 36 H 0.03 1.40 7.08 -2.38 -0.02 1.38 16 37 H 0.04 1.95 4.50 -2.39 -0.01 1.94 16 38 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 39 H 0.06 1.99 7.93 -2.39 -0.02 1.97 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.35 6.40 -2.39 -0.02 1.33 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 44 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.06 0.94 7.54 -2.38 -0.02 0.92 16 Total: -1.00 -79.44 361.08 3.67 -75.77 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.38 Total: 12.62 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.43 Total: 20.30 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -4.01 Total: -122.19 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.80 Total: -36.77 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.67 Total: 50.27 kcal Total: -79.44 3.67 -75.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968532417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.610 kcal (2) G-P(sol) polarization free energy of solvation -79.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds