Wall clock time and date at job start Tue Mar 31 2020 14:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.46600 * 2 1 4 4 C 1.35354 * 116.99371 * 180.02562 * 3 2 1 5 5 N 1.30554 * 125.44247 * 180.30455 * 4 3 2 6 6 C 1.36332 * 108.38358 * 180.16283 * 5 4 3 7 7 C 1.47369 * 126.41354 * 179.82253 * 6 5 4 8 8 O 1.21620 * 119.99932 * 179.68335 * 7 6 5 9 9 N 1.34776 * 120.00074 * 359.68354 * 7 6 5 10 10 C 1.46499 * 120.00077 * 179.97438 * 9 7 6 11 11 H 1.08994 * 110.88689 * 322.57390 * 10 9 7 12 12 C 1.54907 * 111.00010 * 86.45742 * 10 9 7 13 13 N 1.47420 * 104.83524 * 81.06591 * 12 10 9 14 14 C 1.36932 * 125.65088 * 204.09015 * 13 12 10 15 15 H 1.08001 * 120.00072 * 180.02562 * 14 13 12 16 16 C 1.38815 * 120.00288 * 0.04266 * 14 13 12 17 17 N 1.31619 * 119.99512 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00603 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46911 * 89.99498 * 18 16 14 20 20 H 1.48497 * 109.47297 * 210.00245 * 18 16 14 21 21 H 1.48507 * 109.46877 * 330.00101 * 18 16 14 22 22 C 1.47026 * 108.70428 * 24.12518 * 13 12 10 23 23 C 1.54330 * 107.26840 * 358.94103 * 22 13 12 24 24 C 1.53005 * 110.71673 * 96.16971 * 23 22 13 25 25 C 1.52994 * 110.71826 * 219.44364 * 23 22 13 26 26 C 1.35915 * 107.17008 * 359.55525 * 6 5 4 27 27 O 1.34204 * 125.45177 * 359.97117 * 4 3 2 28 28 H 1.08994 * 109.47623 * 59.99586 * 1 2 3 29 29 H 1.09008 * 109.46866 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47098 * 299.99272 * 1 2 3 31 31 H 1.08996 * 109.47048 * 240.00731 * 2 1 3 32 32 H 1.08997 * 109.47335 * 119.99974 * 2 1 3 33 33 H 0.97002 * 119.99742 * 0.02562 * 9 7 6 34 34 H 1.08997 * 110.36783 * 322.22310 * 12 10 9 35 35 H 1.08997 * 110.45914 * 199.94961 * 12 10 9 36 36 H 0.97003 * 120.00403 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.88351 * 118.35702 * 22 13 12 38 38 H 1.08998 * 109.88379 * 239.52492 * 22 13 12 39 39 H 1.08998 * 109.47047 * 61.45324 * 24 23 22 40 40 H 1.09000 * 109.46907 * 181.45365 * 24 23 22 41 41 H 1.09001 * 109.47302 * 301.45440 * 24 23 22 42 42 H 1.08994 * 109.47458 * 58.54762 * 25 23 22 43 43 H 1.09010 * 109.46817 * 178.55144 * 25 23 22 44 44 H 1.09000 * 109.47214 * 298.54123 * 25 23 22 45 45 H 1.08008 * 126.45532 * 180.22694 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 0.0050 6 6 5.3038 2.4526 -0.0014 7 6 6.3629 3.4774 -0.0020 8 8 7.5323 3.1433 -0.0022 9 7 6.0355 4.7848 -0.0022 10 6 7.0884 5.8035 -0.0023 11 1 7.9299 5.4926 0.6168 12 6 7.5497 6.1250 -1.4457 13 7 6.5400 7.0660 -1.9638 14 6 6.2454 7.2727 -3.2850 15 1 5.4855 7.9879 -3.5633 16 6 6.9232 6.5629 -4.2667 17 7 7.8487 5.6907 -3.9274 18 14 6.5209 6.8444 -6.0689 19 1 7.3842 7.9270 -6.6055 20 1 6.7637 5.5936 -6.8316 21 1 5.0948 7.2366 -6.2024 22 6 5.9022 7.7462 -0.8271 23 6 6.5336 7.1765 0.4607 24 6 7.6662 8.0796 0.9535 25 6 5.4732 6.9932 1.5482 26 6 5.4845 1.1055 -0.0010 27 8 4.2630 0.5429 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.1028 5.0512 -0.0017 34 1 7.5677 5.2176 -2.0492 35 1 8.5342 6.5927 -1.4357 36 1 8.3227 5.1949 -4.6133 37 1 6.0856 8.8190 -0.8867 38 1 4.8299 7.5505 -0.8321 39 1 7.2677 9.0664 1.1890 40 1 8.1140 7.6457 1.8476 41 1 8.4237 8.1700 0.1750 42 1 4.6941 6.3223 1.1865 43 1 5.9357 6.5666 2.4384 44 1 5.0346 7.9601 1.7947 45 1 6.4308 0.5850 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974773653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:39 Heat of formation + Delta-G solvation = -15.506402 kcal Electronic energy + Delta-G solvation = -28254.023510 eV Core-core repulsion = 24275.123508 eV Total energy + Delta-G solvation = -3978.900002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.42614 -39.60889 -39.08410 -37.75625 -34.90337 -33.74922 -32.88395 -32.23144 -30.62936 -29.57307 -28.09292 -26.80881 -25.54400 -24.51434 -23.83222 -22.98823 -22.22094 -20.64270 -19.82814 -19.18151 -18.34258 -17.64171 -17.10778 -16.62598 -16.34508 -15.81169 -15.73608 -15.10983 -14.64733 -14.22520 -13.98977 -13.74072 -13.64906 -13.41245 -13.23044 -13.13490 -13.09540 -12.56550 -12.13946 -12.12791 -11.86667 -11.70381 -11.60630 -11.24790 -11.09433 -10.98584 -10.87729 -10.74905 -10.71607 -10.33556 -10.15243 -9.90136 -9.78064 -9.64424 -9.61406 -8.71102 -8.61144 -8.27214 -6.73444 -5.55912 -2.98273 1.19809 1.81165 2.14712 2.65728 3.44719 3.49366 3.51682 3.52533 3.72656 4.42911 4.43452 4.54984 4.56766 4.75285 4.92257 5.04985 5.08873 5.31812 5.31990 5.33576 5.37830 5.50974 5.59773 5.61418 5.69220 5.84372 5.87199 5.95726 6.11622 6.16606 6.25321 6.36546 6.46847 6.56349 6.57393 6.68022 6.77161 6.83649 7.04944 7.46901 7.58035 7.69532 7.94638 8.10594 8.46518 8.67911 9.29394 9.91068 10.55357 11.46907 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.003987 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.908852 B = 7020.962478 C = 8211.674167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.246 6.246 4 C 0.377 3.623 5 N -0.451 5.451 6 C -0.034 4.034 7 C 0.600 3.400 8 O -0.537 6.537 9 N -0.680 5.680 10 C 0.122 3.878 11 H 0.087 0.913 12 C 0.146 3.854 13 N -0.601 5.601 14 C -0.222 4.222 15 H 0.076 0.924 16 C -0.010 4.010 17 N -0.918 5.918 18 Si 0.912 3.088 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.142 3.858 23 C -0.086 4.086 24 C -0.128 4.128 25 C -0.133 4.133 26 C -0.007 4.007 27 O -0.229 6.229 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.406 0.594 34 H 0.114 0.886 35 H 0.022 0.978 36 H 0.251 0.749 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 -10.409 12.694 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.154 6.154 4 C 0.131 3.869 5 N -0.197 5.197 6 C -0.153 4.153 7 C 0.384 3.616 8 O -0.415 6.415 9 N -0.329 5.329 10 C 0.017 3.983 11 H 0.105 0.895 12 C 0.021 3.979 13 N -0.327 5.327 14 C -0.350 4.350 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.742 3.258 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C 0.016 3.984 23 C -0.087 4.087 24 C -0.185 4.185 25 C -0.191 4.191 26 C -0.078 4.078 27 O -0.120 6.120 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.243 0.757 34 H 0.131 0.869 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -9.993 -10.037 12.478 18.876 hybrid contribution -0.366 -0.564 -1.107 1.295 sum -10.359 -10.601 11.371 18.681 Atomic orbital electron populations 1.21806 0.91351 1.03508 1.04233 1.23024 0.96762 0.79604 1.02965 1.86381 1.09112 1.30546 1.89376 1.23281 0.83371 0.81698 0.98534 1.71139 1.04126 1.21395 1.22999 1.21868 0.90133 0.94218 1.09072 1.16542 0.85970 0.81868 0.77192 1.90817 1.17778 1.81400 1.51516 1.45652 1.11051 1.04489 1.71741 1.22583 0.89271 0.85419 1.01004 0.89487 1.22306 0.90046 0.97048 0.88515 1.44443 1.42321 1.45140 1.00749 1.19034 1.16692 1.18744 0.80574 0.90584 1.24775 0.98664 0.99156 0.97947 1.69803 1.27184 1.28646 1.30960 0.86117 0.77685 0.76951 0.85007 1.21703 1.21789 1.20791 1.21421 0.95185 0.95321 0.86428 1.21832 0.96154 0.95176 0.95586 1.21686 0.97835 0.98322 1.00687 1.21738 0.98262 1.01271 0.97794 1.24931 0.85648 0.92978 1.04279 1.84357 1.16300 1.39182 1.72162 0.90897 0.89570 0.91017 0.90831 0.90924 0.75728 0.86887 0.96023 0.93784 0.95810 0.95923 0.92649 0.93092 0.91734 0.92621 0.92847 0.92666 0.74808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.39 6.38 37.16 0.24 0.63 16 3 O -0.25 -2.98 10.19 -40.98 -0.42 -3.40 16 4 C 0.38 5.41 8.98 52.22 0.47 5.87 16 5 N -0.45 -7.64 11.10 -11.71 -0.13 -7.77 16 6 C -0.03 -0.57 6.99 -82.98 -0.58 -1.16 16 7 C 0.60 11.80 7.81 -12.54 -0.10 11.70 16 8 O -0.54 -11.69 16.63 5.26 0.09 -11.60 16 9 N -0.68 -13.20 4.67 -52.82 -0.25 -13.45 16 10 C 0.12 2.46 2.56 -65.78 -0.17 2.29 16 11 H 0.09 1.72 7.63 -51.93 -0.40 1.33 16 12 C 0.15 3.68 5.26 -2.53 -0.01 3.67 16 13 N -0.60 -15.48 3.39 -170.08 -0.58 -16.06 16 14 C -0.22 -6.30 10.27 -15.06 -0.15 -6.46 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 17 N -0.92 -27.66 10.09 55.49 0.56 -27.10 16 18 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 22 C 0.14 2.98 6.41 -3.06 -0.02 2.96 16 23 C -0.09 -1.50 0.81 -152.67 -0.12 -1.62 16 24 C -0.13 -1.97 8.44 37.16 0.31 -1.66 16 25 C -0.13 -1.90 8.16 37.15 0.30 -1.60 16 26 C -0.01 -0.09 11.93 29.90 0.36 0.27 16 27 O -0.23 -2.92 10.20 -17.75 -0.18 -3.10 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.41 7.65 6.54 -40.82 -0.27 7.38 16 34 H 0.11 3.31 5.87 -51.93 -0.30 3.01 16 35 H 0.02 0.58 7.72 -51.93 -0.40 0.18 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.02 0.50 7.84 -51.93 -0.41 0.09 16 38 H 0.02 0.48 7.82 -51.93 -0.41 0.07 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.12 7.45 -51.93 -0.39 0.73 16 42 H 0.05 0.82 6.21 -51.93 -0.32 0.50 16 43 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.24 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -33.95 371.47 -6.19 -40.14 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.66 Total: 4.96 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 0.81 Total: 14.08 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.39 Total: -64.38 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.51 Total: -18.10 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.95 -6.19 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974773653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.633 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds