Wall clock time and date at job start Tue Mar 31 2020 14:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.46600 * 2 1 4 4 C 1.35354 * 116.99371 * 180.02562 * 3 2 1 5 5 N 1.30554 * 125.44247 * 180.30455 * 4 3 2 6 6 C 1.36332 * 108.38358 * 180.16283 * 5 4 3 7 7 C 1.47369 * 126.41354 * 179.82253 * 6 5 4 8 8 O 1.21620 * 119.99932 * 179.68335 * 7 6 5 9 9 N 1.34776 * 120.00074 * 359.68354 * 7 6 5 10 10 C 1.46499 * 120.00077 * 179.97438 * 9 7 6 11 11 H 1.08994 * 110.88689 * 322.57390 * 10 9 7 12 12 C 1.54907 * 111.00010 * 86.45742 * 10 9 7 13 13 N 1.47420 * 104.83524 * 81.06591 * 12 10 9 14 14 C 1.36932 * 125.65088 * 204.09015 * 13 12 10 15 15 H 1.08001 * 120.00072 * 180.02562 * 14 13 12 16 16 C 1.38815 * 120.00288 * 0.04266 * 14 13 12 17 17 N 1.31619 * 119.99512 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00603 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46911 * 89.99498 * 18 16 14 20 20 H 1.48497 * 109.47297 * 210.00245 * 18 16 14 21 21 H 1.48507 * 109.46877 * 330.00101 * 18 16 14 22 22 C 1.47026 * 108.70428 * 24.12518 * 13 12 10 23 23 C 1.54330 * 107.26840 * 358.94103 * 22 13 12 24 24 C 1.53005 * 110.71673 * 96.16971 * 23 22 13 25 25 C 1.52994 * 110.71826 * 219.44364 * 23 22 13 26 26 C 1.35915 * 107.17008 * 359.55525 * 6 5 4 27 27 O 1.34204 * 125.45177 * 359.97117 * 4 3 2 28 28 H 1.08994 * 109.47623 * 59.99586 * 1 2 3 29 29 H 1.09008 * 109.46866 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47098 * 299.99272 * 1 2 3 31 31 H 1.08996 * 109.47048 * 240.00731 * 2 1 3 32 32 H 1.08997 * 109.47335 * 119.99974 * 2 1 3 33 33 H 0.97002 * 119.99742 * 0.02562 * 9 7 6 34 34 H 1.08997 * 110.36783 * 322.22310 * 12 10 9 35 35 H 1.08997 * 110.45914 * 199.94961 * 12 10 9 36 36 H 0.97003 * 120.00403 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.88351 * 118.35702 * 22 13 12 38 38 H 1.08998 * 109.88379 * 239.52492 * 22 13 12 39 39 H 1.08998 * 109.47047 * 61.45324 * 24 23 22 40 40 H 1.09000 * 109.46907 * 181.45365 * 24 23 22 41 41 H 1.09001 * 109.47302 * 301.45440 * 24 23 22 42 42 H 1.08994 * 109.47458 * 58.54762 * 25 23 22 43 43 H 1.09010 * 109.46817 * 178.55144 * 25 23 22 44 44 H 1.09000 * 109.47214 * 298.54123 * 25 23 22 45 45 H 1.08008 * 126.45532 * 180.22694 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 0.0050 6 6 5.3038 2.4526 -0.0014 7 6 6.3629 3.4774 -0.0020 8 8 7.5323 3.1433 -0.0022 9 7 6.0355 4.7848 -0.0022 10 6 7.0884 5.8035 -0.0023 11 1 7.9299 5.4926 0.6168 12 6 7.5497 6.1250 -1.4457 13 7 6.5400 7.0660 -1.9638 14 6 6.2454 7.2727 -3.2850 15 1 5.4855 7.9879 -3.5633 16 6 6.9232 6.5629 -4.2667 17 7 7.8487 5.6907 -3.9274 18 14 6.5209 6.8444 -6.0689 19 1 7.3842 7.9270 -6.6055 20 1 6.7637 5.5936 -6.8316 21 1 5.0948 7.2366 -6.2024 22 6 5.9022 7.7462 -0.8271 23 6 6.5336 7.1765 0.4607 24 6 7.6662 8.0796 0.9535 25 6 5.4732 6.9932 1.5482 26 6 5.4845 1.1055 -0.0010 27 8 4.2630 0.5429 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.1028 5.0512 -0.0017 34 1 7.5677 5.2176 -2.0492 35 1 8.5342 6.5927 -1.4357 36 1 8.3227 5.1949 -4.6133 37 1 6.0856 8.8190 -0.8867 38 1 4.8299 7.5505 -0.8321 39 1 7.2677 9.0664 1.1890 40 1 8.1140 7.6457 1.8476 41 1 8.4237 8.1700 0.1750 42 1 4.6941 6.3223 1.1865 43 1 5.9357 6.5666 2.4384 44 1 5.0346 7.9601 1.7947 45 1 6.4308 0.5850 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974773653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:38 Heat of formation + Delta-G solvation = -42.287377 kcal Electronic energy + Delta-G solvation = -28255.184820 eV Core-core repulsion = 24275.123508 eV Total energy + Delta-G solvation = -3980.061312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.54869 -41.16633 -40.00963 -39.33532 -36.09942 -35.66012 -34.43329 -32.86961 -32.59687 -30.72976 -29.78299 -28.07679 -27.42796 -25.89790 -24.77227 -24.37862 -23.34834 -22.20845 -21.40431 -20.51849 -19.69595 -18.70700 -18.65137 -18.35446 -17.50106 -17.31675 -16.67696 -16.52892 -16.09128 -15.83638 -15.63620 -15.33027 -15.18946 -14.66028 -14.50666 -14.11628 -13.92667 -13.72352 -13.64724 -13.56861 -13.07087 -13.01501 -12.86037 -12.67614 -12.63251 -12.57203 -12.51729 -12.11023 -11.91375 -11.79808 -11.78314 -11.76016 -11.45544 -11.36887 -11.23394 -10.75548 -10.04624 -9.73857 -8.83287 -7.74388 -5.19148 0.02995 0.81503 0.92772 1.43515 1.45900 1.54313 1.65750 2.11028 2.29880 2.49249 3.33324 3.37031 3.57174 3.70426 3.72809 3.92656 3.96218 3.97955 4.07456 4.08439 4.26156 4.37798 4.41918 4.52597 4.62720 4.74540 4.83805 4.85351 4.86888 4.88876 4.93094 5.04308 5.12228 5.18273 5.21497 5.29780 5.33613 5.48189 5.54326 5.62677 5.67846 5.84435 6.32523 6.34026 6.61804 7.10827 7.15607 7.80312 8.44131 9.26134 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.003987 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.908852 B = 7020.962478 C = 8211.674167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.256 6.256 4 C 0.385 3.615 5 N -0.484 5.484 6 C -0.073 4.073 7 C 0.597 3.403 8 O -0.567 6.567 9 N -0.679 5.679 10 C 0.133 3.867 11 H 0.090 0.910 12 C 0.155 3.845 13 N -0.618 5.618 14 C -0.235 4.235 15 H 0.081 0.919 16 C -0.068 4.068 17 N -0.947 5.947 18 Si 0.977 3.023 19 H -0.285 1.285 20 H -0.297 1.297 21 H -0.269 1.269 22 C 0.137 3.863 23 C -0.073 4.073 24 C -0.124 4.124 25 C -0.125 4.125 26 C 0.027 3.973 27 O -0.213 6.213 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.409 0.591 34 H 0.069 0.931 35 H -0.007 1.007 36 H 0.243 0.757 37 H 0.029 0.971 38 H 0.027 0.973 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 -10.976 14.084 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.165 6.165 4 C 0.138 3.862 5 N -0.230 5.230 6 C -0.191 4.191 7 C 0.383 3.617 8 O -0.447 6.447 9 N -0.328 5.328 10 C 0.028 3.972 11 H 0.108 0.892 12 C 0.029 3.971 13 N -0.344 5.344 14 C -0.364 4.364 15 H 0.099 0.901 16 C -0.260 4.260 17 N -0.597 5.597 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.224 1.224 21 H -0.194 1.194 22 C 0.012 3.988 23 C -0.074 4.074 24 C -0.182 4.182 25 C -0.183 4.183 26 C -0.046 4.046 27 O -0.104 6.104 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.011 0.989 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -11.891 -10.584 13.897 21.131 hybrid contribution 0.131 -0.455 -1.536 1.607 sum -11.760 -11.038 12.361 20.321 Atomic orbital electron populations 1.21863 0.89648 1.05125 1.03852 1.23468 0.98050 0.77751 1.04156 1.86427 1.07641 1.33391 1.88996 1.23306 0.84250 0.81401 0.97278 1.71008 1.04279 1.23049 1.24670 1.21548 0.89902 0.94792 1.12858 1.16919 0.86321 0.82308 0.76136 1.90784 1.19151 1.81889 1.52918 1.45617 1.10888 1.04543 1.71750 1.22322 0.89989 0.87348 0.97573 0.89222 1.21958 0.89203 0.94814 0.91171 1.44676 1.42603 1.45866 1.01283 1.19435 1.16413 1.18378 0.82152 0.90068 1.25613 0.98959 0.99338 1.02097 1.70107 1.28323 1.29687 1.31558 0.85093 0.78018 0.76422 0.79911 1.21236 1.22396 1.19398 1.21646 0.95245 0.95299 0.86576 1.21825 0.97460 0.93078 0.95009 1.21682 0.96539 0.99311 1.00659 1.21693 0.97030 1.02641 0.96913 1.25516 0.86661 0.91957 1.00441 1.84405 1.15859 1.38432 1.71703 0.91603 0.86874 0.91070 0.90059 0.89315 0.75389 0.91267 0.98910 0.94716 0.95290 0.95532 0.90332 0.90694 0.94441 0.93233 0.91102 0.90309 0.71720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 2 C 0.04 0.51 6.38 71.98 0.46 0.97 16 3 O -0.26 -5.86 10.19 -64.23 -0.65 -6.52 16 4 C 0.38 10.57 8.98 130.43 1.17 11.75 16 5 N -0.48 -16.27 11.10 -419.38 -4.65 -20.92 16 6 C -0.07 -2.48 6.99 40.31 0.28 -2.20 16 7 C 0.60 23.94 7.81 86.65 0.68 24.61 16 8 O -0.57 -25.31 16.63 -4.09 -0.07 -25.38 16 9 N -0.68 -26.79 4.67 -439.28 -2.05 -28.84 16 10 C 0.13 5.44 2.56 46.38 0.12 5.56 16 11 H 0.09 3.61 7.63 -2.39 -0.02 3.59 16 12 C 0.15 8.16 5.26 86.86 0.46 8.61 16 13 N -0.62 -32.73 3.39 -692.00 -2.35 -35.08 16 14 C -0.23 -13.60 10.27 84.03 0.86 -12.74 16 15 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 16 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 17 N -0.95 -59.65 10.09 21.65 0.22 -59.43 16 18 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 C 0.14 5.69 6.41 86.73 0.56 6.24 16 23 C -0.07 -2.44 0.81 -50.99 -0.04 -2.48 16 24 C -0.12 -3.63 8.44 71.98 0.61 -3.02 16 25 C -0.13 -3.25 8.16 71.98 0.59 -2.66 16 26 C 0.03 0.69 11.93 67.28 0.80 1.49 16 27 O -0.21 -5.03 10.20 18.92 0.19 -4.83 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.11 0.38 8.14 -2.38 -0.02 0.37 16 30 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.41 15.55 6.54 -92.71 -0.61 14.94 16 34 H 0.07 4.30 5.87 -2.39 -0.01 4.29 16 35 H -0.01 -0.39 7.72 -2.39 -0.02 -0.41 16 36 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.03 1.18 7.84 -2.39 -0.02 1.16 16 38 H 0.03 1.09 7.82 -2.39 -0.02 1.07 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.29 7.45 -2.39 -0.02 1.27 16 42 H 0.05 1.36 6.21 -2.39 -0.01 1.34 16 43 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.27 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -77.37 371.47 0.81 -76.56 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.40 Total: 22.64 kcal Atomic # 6 Polarization: 24.32 SS G_CDS: 7.75 Total: 32.07 kcal Atomic # 7 Polarization: -135.43 SS G_CDS: -8.84 Total: -144.27 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.53 Total: -36.73 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -77.37 0.81 -76.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974773653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.270 kcal (2) G-P(sol) polarization free energy of solvation -77.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds