Wall clock time and date at job start Tue Mar 31 2020 14:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47209 * 2 1 4 4 C 1.35726 * 117.00086 * 179.97438 * 3 2 1 5 5 C 1.41859 * 126.78579 * 179.97438 * 4 3 2 6 6 C 1.36666 * 103.80861 * 180.02562 * 5 4 3 7 7 C 1.47549 * 126.87376 * 180.02562 * 6 5 4 8 8 O 1.21579 * 120.00212 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99558 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99478 * 179.97438 * 9 7 6 11 11 H 1.08992 * 110.89301 * 34.29919 * 10 9 7 12 12 C 1.54911 * 111.00232 * 270.41231 * 10 9 7 13 13 N 1.47420 * 104.83893 * 278.93900 * 12 10 9 14 14 C 1.36931 * 125.65179 * 155.83340 * 13 12 10 15 15 H 1.08002 * 120.00062 * 353.90008 * 14 13 12 16 16 C 1.38817 * 120.00085 * 173.89178 * 14 13 12 17 17 N 1.31613 * 119.99922 * 6.83343 * 16 14 13 18 18 Si 1.86801 * 119.99895 * 186.83126 * 16 14 13 19 19 H 1.48492 * 109.47294 * 94.98628 * 18 16 14 20 20 H 1.48507 * 109.46947 * 214.98750 * 18 16 14 21 21 H 1.48497 * 109.47107 * 334.98504 * 18 16 14 22 22 C 1.47024 * 108.70050 * 335.87380 * 13 12 10 23 23 C 1.54429 * 107.28440 * 1.06108 * 22 13 12 24 24 C 1.53007 * 110.72204 * 263.84807 * 23 22 13 25 25 C 1.52995 * 110.76582 * 140.54320 * 23 22 13 26 26 O 1.34650 * 106.24275 * 359.97438 * 6 5 4 27 27 N 1.20871 * 111.63399 * 0.02562 * 26 6 5 28 28 H 1.09007 * 109.47163 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47047 * 299.99831 * 1 2 3 30 30 H 1.08994 * 109.47165 * 59.99744 * 1 2 3 31 31 H 1.08997 * 109.47190 * 239.99887 * 2 1 3 32 32 H 1.09002 * 109.47005 * 119.99980 * 2 1 3 33 33 H 1.08000 * 128.09715 * 0.04513 * 5 4 3 34 34 H 0.96997 * 119.99784 * 359.97438 * 9 7 6 35 35 H 1.08998 * 110.36572 * 37.78421 * 12 10 9 36 36 H 1.09007 * 110.36196 * 160.09934 * 12 10 9 37 37 H 0.97000 * 119.99939 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.88088 * 120.47221 * 22 13 12 39 39 H 1.08996 * 109.88298 * 241.48375 * 22 13 12 40 40 H 1.08993 * 109.46884 * 173.46220 * 24 23 22 41 41 H 1.08998 * 109.46905 * 293.46653 * 24 23 22 42 42 H 1.09000 * 109.46922 * 53.46256 * 24 23 22 43 43 H 1.09001 * 109.46761 * 306.50868 * 25 23 22 44 44 H 1.08997 * 109.47221 * 66.50792 * 25 23 22 45 45 H 1.09001 * 109.47169 * 186.51833 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3519 1.5250 0.0005 5 6 4.0452 2.7627 0.0001 6 6 5.3625 2.3986 0.0004 7 6 6.5303 3.3005 0.0007 8 8 6.3679 4.5054 0.0003 9 7 7.7771 2.7885 0.0014 10 6 8.9365 3.6839 0.0012 11 1 8.7298 4.5877 0.5743 12 6 9.3700 4.0305 -1.4451 13 7 10.1722 2.8749 -1.8860 14 6 10.3776 2.4951 -3.1854 15 1 9.8551 2.9998 -3.9846 16 6 11.2576 1.4614 -3.4756 17 7 11.7914 0.7581 -2.4996 18 14 11.6841 1.0688 -5.2514 19 1 12.9393 1.7685 -5.6253 20 1 11.8702 -0.3967 -5.4033 21 1 10.5819 1.5223 -6.1371 22 6 10.7143 2.1971 -0.6992 23 6 10.1984 2.9598 0.5405 24 6 11.2382 3.9725 1.0246 25 6 9.8266 1.9861 1.6605 26 8 5.3812 1.0523 0.0015 27 7 4.2639 0.5911 0.0014 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.6294 3.7594 0.0000 34 1 7.9065 1.8272 0.0022 35 1 8.4956 4.1515 -2.0845 36 1 9.9750 4.9373 -1.4527 37 1 12.4060 0.0356 -2.7024 38 1 10.3660 1.1646 -0.6705 39 1 11.8037 2.2201 -0.7246 40 1 10.8110 4.5779 1.8239 41 1 12.1145 3.4430 1.3984 42 1 11.5298 4.6180 0.1961 43 1 9.1297 1.2407 1.2774 44 1 10.7264 1.4895 2.0238 45 1 9.3588 2.5344 2.4782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974825739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:35 Heat of formation + Delta-G solvation = 19.347191 kcal Electronic energy + Delta-G solvation = -28007.006712 eV Core-core repulsion = 24029.618075 eV Total energy + Delta-G solvation = -3977.388636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.05808 -39.93761 -39.20503 -38.03857 -34.07479 -33.61703 -33.10527 -31.99034 -31.38203 -31.01862 -27.90330 -26.83983 -25.75962 -24.81806 -23.76663 -23.43970 -22.65839 -20.91699 -20.14291 -19.33170 -18.22696 -18.05220 -17.06123 -16.91571 -16.20374 -16.10188 -15.95285 -14.90158 -14.70226 -14.57695 -14.26764 -13.79573 -13.72633 -13.50776 -13.38437 -13.05010 -13.00166 -12.83453 -12.32504 -12.20433 -11.95308 -11.81135 -11.47382 -11.45081 -11.42962 -11.18713 -10.89657 -10.79170 -10.40842 -10.36247 -10.06036 -10.03544 -9.94631 -9.84877 -9.53976 -9.48056 -8.85323 -8.56664 -6.83124 -5.74396 -3.05940 0.71638 1.97874 2.39705 2.58031 3.05877 3.39850 3.43058 3.46072 3.47212 3.95717 4.49225 4.52856 4.56228 4.67460 4.85556 4.89878 4.98219 5.05887 5.27072 5.28735 5.38078 5.39615 5.52796 5.54179 5.59525 5.64465 5.80059 5.84882 6.00803 6.08231 6.20454 6.29950 6.33701 6.49151 6.58071 6.66575 6.71057 6.74836 6.89057 7.49188 7.51408 7.60847 7.79918 7.95426 8.14679 8.23080 9.20351 9.80281 10.46029 11.37687 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.003370 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.181593 B = 8305.443335 C = 9543.250081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.205 3.795 5 C -0.161 4.161 6 C -0.047 4.047 7 C 0.602 3.398 8 O -0.518 6.518 9 N -0.682 5.682 10 C 0.135 3.865 11 H 0.095 0.905 12 C 0.126 3.874 13 N -0.603 5.603 14 C -0.226 4.226 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.920 5.920 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.186 3.814 23 C -0.103 4.103 24 C -0.126 4.126 25 C -0.130 4.130 26 O 0.120 5.880 27 N -0.391 5.391 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.189 0.811 34 H 0.410 0.590 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.252 0.748 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.007 0.633 9.895 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.008 3.992 5 C -0.184 4.184 6 C -0.113 4.113 7 C 0.384 3.616 8 O -0.394 6.394 9 N -0.331 5.331 10 C 0.030 3.970 11 H 0.113 0.887 12 C -0.001 4.001 13 N -0.329 5.329 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.202 4.202 17 N -0.567 5.567 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.061 3.939 23 C -0.104 4.104 24 C -0.184 4.184 25 C -0.187 4.187 26 O 0.054 5.946 27 N -0.114 5.114 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.206 0.794 34 H 0.247 0.753 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.273 0.198 9.766 18.130 hybrid contribution 0.089 -0.270 -1.079 1.115 sum -15.184 -0.071 8.688 17.494 Atomic orbital electron populations 1.21795 0.92160 1.03211 1.03660 1.22842 0.95878 0.80567 1.02572 1.86203 1.13027 1.30264 1.89392 1.21826 0.85806 0.90525 1.01084 1.22133 0.90062 0.99174 1.06995 1.24209 0.96724 0.84263 1.06132 1.16444 0.81140 0.86011 0.78015 1.90856 1.84900 1.12729 1.50953 1.45824 1.04439 1.11658 1.71209 1.22367 0.83566 0.92407 0.98664 0.88736 1.21946 0.94622 0.91607 0.91972 1.44438 1.57921 1.28168 1.02406 1.19039 1.20150 1.14263 0.82010 0.90536 1.24781 0.99446 0.98482 0.97492 1.69944 1.34643 1.22712 1.29403 0.86143 0.78361 0.77221 0.84334 1.21667 1.21825 1.20711 1.21347 0.97829 0.93641 0.81041 1.22231 0.94008 0.96552 0.97609 1.21675 0.97930 0.98266 1.00485 1.21685 1.01277 0.98510 0.97261 1.84983 1.22727 1.18673 1.68224 1.74007 0.90441 1.22186 1.24801 0.89946 0.91363 0.91317 0.91440 0.91517 0.79364 0.75265 0.93886 0.95022 0.93773 0.93726 0.93109 0.93476 0.92303 0.92084 0.92856 0.92241 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.52 6.38 37.16 0.24 0.75 16 3 O -0.28 -3.37 10.21 -18.89 -0.19 -3.56 16 4 C 0.20 2.74 8.00 -16.72 -0.13 2.61 16 5 C -0.16 -2.09 10.97 -38.77 -0.43 -2.52 16 6 C -0.05 -0.67 7.29 -36.35 -0.26 -0.93 16 7 C 0.60 9.50 7.82 -12.46 -0.10 9.40 16 8 O -0.52 -9.23 16.60 5.30 0.09 -9.14 16 9 N -0.68 -10.84 4.62 -52.76 -0.24 -11.08 16 10 C 0.13 2.27 2.61 -65.78 -0.17 2.10 16 11 H 0.09 1.52 7.53 -51.93 -0.39 1.12 16 12 C 0.13 2.55 6.62 -2.53 -0.02 2.54 16 13 N -0.60 -14.55 3.39 -170.01 -0.58 -15.12 16 14 C -0.23 -6.14 10.26 -15.06 -0.15 -6.29 16 15 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 16 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 17 N -0.92 -26.01 10.36 55.49 0.57 -25.44 16 18 Si 0.91 21.88 29.56 -169.99 -5.02 16.85 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.19 4.13 4.55 -3.01 -0.01 4.11 16 23 C -0.10 -1.71 0.81 -152.61 -0.12 -1.83 16 24 C -0.13 -1.89 8.41 37.16 0.31 -1.57 16 25 C -0.13 -1.83 8.08 37.16 0.30 -1.53 16 26 O 0.12 1.74 11.03 15.53 0.17 1.91 16 27 N -0.39 -5.62 11.50 30.47 0.35 -5.27 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.19 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.41 6.40 6.85 -40.82 -0.28 6.12 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.64 7.80 -51.92 -0.41 0.23 16 37 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.04 1.09 7.18 -51.93 -0.37 0.72 16 39 H 0.05 1.28 7.07 -51.93 -0.37 0.91 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.99 7.57 -51.93 -0.39 0.60 16 43 H 0.05 0.75 6.42 -51.93 -0.33 0.42 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -30.47 372.19 -6.25 -36.72 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.74 Total: 2.52 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -0.26 Total: 6.01 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.10 Total: -56.92 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.47 -6.25 -36.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974825739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.067 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds