Wall clock time and date at job start Tue Mar 31 2020 14:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47277 * 2 1 4 4 C 1.35723 * 117.00090 * 180.02562 * 3 2 1 5 5 C 1.41858 * 126.78542 * 180.22835 * 4 3 2 6 6 C 1.36660 * 103.81014 * 180.12000 * 5 4 3 7 7 C 1.47549 * 126.87900 * 179.97438 * 6 5 4 8 8 O 1.21579 * 119.99863 * 359.70662 * 7 6 5 9 9 N 1.34776 * 120.00149 * 179.70779 * 7 6 5 10 10 C 1.46499 * 120.00077 * 179.97438 * 9 7 6 11 11 H 1.08994 * 110.88689 * 322.57390 * 10 9 7 12 12 C 1.54907 * 111.00010 * 86.45742 * 10 9 7 13 13 N 1.47420 * 104.83524 * 81.06591 * 12 10 9 14 14 C 1.36932 * 125.65088 * 204.09015 * 13 12 10 15 15 H 1.08001 * 120.00072 * 180.02562 * 14 13 12 16 16 C 1.38815 * 120.00288 * 0.04266 * 14 13 12 17 17 N 1.31619 * 119.99512 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00603 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46911 * 89.99498 * 18 16 14 20 20 H 1.48497 * 109.47297 * 210.00245 * 18 16 14 21 21 H 1.48507 * 109.46877 * 330.00101 * 18 16 14 22 22 C 1.47026 * 108.70428 * 24.12518 * 13 12 10 23 23 C 1.54330 * 107.26840 * 358.94103 * 22 13 12 24 24 C 1.53005 * 110.71673 * 96.16971 * 23 22 13 25 25 C 1.52994 * 110.71826 * 219.44364 * 23 22 13 26 26 O 1.34655 * 106.24493 * 359.67057 * 6 5 4 27 27 N 1.20880 * 111.63083 * 0.22468 * 26 6 5 28 28 H 1.09005 * 109.47612 * 300.00441 * 1 2 3 29 29 H 1.08998 * 109.46845 * 60.00415 * 1 2 3 30 30 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47125 * 239.99292 * 2 1 3 32 32 H 1.08998 * 109.46845 * 119.99585 * 2 1 3 33 33 H 1.07998 * 128.09311 * 0.03771 * 5 4 3 34 34 H 0.97002 * 119.99742 * 0.02562 * 9 7 6 35 35 H 1.08997 * 110.36783 * 322.22310 * 12 10 9 36 36 H 1.08997 * 110.45914 * 199.94961 * 12 10 9 37 37 H 0.97003 * 120.00403 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.88351 * 118.35702 * 22 13 12 39 39 H 1.08998 * 109.88379 * 239.52492 * 22 13 12 40 40 H 1.08998 * 109.47047 * 61.45324 * 24 23 22 41 41 H 1.09000 * 109.46907 * 181.45365 * 24 23 22 42 42 H 1.09001 * 109.47302 * 301.45440 * 24 23 22 43 43 H 1.08994 * 109.47458 * 58.54762 * 25 23 22 44 44 H 1.09010 * 109.46817 * 178.55144 * 25 23 22 45 45 H 1.09000 * 109.47214 * 298.54123 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0452 2.7627 0.0039 6 6 5.3624 2.3987 -0.0016 7 6 6.5303 3.3005 -0.0008 8 8 6.3679 4.5054 0.0000 9 7 7.7770 2.7886 -0.0008 10 6 8.9365 3.6839 -0.0005 11 1 8.7499 4.5616 -0.6192 12 6 9.3212 4.0936 1.4430 13 7 10.1072 2.9589 1.9606 14 6 10.2696 2.6371 3.2817 15 1 10.8681 1.7821 3.5596 16 6 9.6647 3.4095 4.2637 17 7 8.9346 4.4510 3.9249 18 14 9.8856 2.9702 6.0657 19 1 11.0811 3.6686 6.6025 20 1 8.6827 3.3901 6.8287 21 1 10.0686 1.5025 6.1986 22 6 10.6886 2.2303 0.8236 23 6 10.2155 2.9377 -0.4639 24 6 11.2720 3.9288 -0.9564 25 6 9.8814 1.9151 -1.5518 26 8 5.3812 1.0523 -0.0012 27 7 4.2638 0.5911 -0.0006 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.6293 3.7594 0.0089 34 1 7.9065 1.8272 -0.0018 35 1 8.4259 4.2417 2.0467 36 1 9.9256 5.0006 1.4334 37 1 8.5122 4.9911 4.6110 38 1 11.7766 2.2575 0.8831 39 1 10.3407 1.1973 0.8282 40 1 12.1912 3.3926 -1.1922 41 1 10.9069 4.4346 -1.8502 42 1 11.4705 4.6651 -0.1776 43 1 9.1055 1.2403 -1.1903 44 1 9.5257 2.4345 -2.4417 45 1 10.7752 1.3421 -1.7986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974825741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:38 Heat of formation + Delta-G solvation = 22.412512 kcal Electronic energy + Delta-G solvation = -28183.678867 eV Core-core repulsion = 24206.423153 eV Total energy + Delta-G solvation = -3977.255714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.95067 -39.80455 -39.13180 -37.97817 -33.98729 -33.57852 -33.15783 -31.88459 -31.29386 -30.70881 -28.24793 -26.92771 -25.63126 -24.72698 -23.68550 -23.33455 -22.58187 -20.84266 -20.07027 -19.28876 -18.26795 -17.95411 -16.97440 -16.73749 -16.14104 -16.09405 -15.81564 -14.84169 -14.73891 -14.36323 -14.07887 -13.86773 -13.76895 -13.52221 -13.32337 -13.20935 -12.99149 -12.71301 -12.22905 -12.14852 -11.96017 -11.80628 -11.40488 -11.39390 -11.32410 -11.18813 -11.03932 -10.78652 -10.45791 -10.24533 -10.06594 -9.92705 -9.81649 -9.80034 -9.70404 -9.39490 -8.71233 -8.50848 -6.82264 -5.63480 -3.06190 0.85220 2.07842 2.47820 2.70400 3.26889 3.40755 3.45722 3.48060 3.57374 4.05347 4.49114 4.60218 4.60853 4.75729 4.91455 4.94780 5.02539 5.16840 5.21323 5.25656 5.34346 5.44271 5.52157 5.59202 5.64377 5.71738 5.74476 5.85766 5.99969 6.06970 6.13608 6.23474 6.35362 6.47639 6.56080 6.59188 6.68940 6.82809 6.90447 7.41531 7.60674 7.68061 7.88166 8.05875 8.34685 8.37671 9.21789 9.83340 10.46695 11.39489 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.003781 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.498435 B = 7404.502626 C = 8902.855980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.206 3.794 5 C -0.162 4.162 6 C -0.041 4.041 7 C 0.602 3.398 8 O -0.509 6.509 9 N -0.682 5.682 10 C 0.122 3.878 11 H 0.091 0.909 12 C 0.145 3.855 13 N -0.601 5.601 14 C -0.224 4.224 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.917 5.917 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.141 3.859 23 C -0.086 4.086 24 C -0.128 4.128 25 C -0.134 4.134 26 O 0.115 5.885 27 N -0.394 5.394 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.189 0.811 34 H 0.404 0.596 35 H 0.115 0.885 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.025 0.975 39 H 0.023 0.977 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.177 -6.939 -12.646 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.189 6.189 4 C 0.009 3.991 5 C -0.185 4.185 6 C -0.108 4.108 7 C 0.384 3.616 8 O -0.385 6.385 9 N -0.332 5.332 10 C 0.017 3.983 11 H 0.109 0.891 12 C 0.020 3.980 13 N -0.327 5.327 14 C -0.353 4.353 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.743 3.257 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.015 3.985 23 C -0.087 4.087 24 C -0.186 4.186 25 C -0.192 4.192 26 O 0.050 5.950 27 N -0.119 5.119 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.206 0.794 34 H 0.240 0.760 35 H 0.132 0.868 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.625 -7.120 -12.419 17.250 hybrid contribution -0.016 -0.160 1.104 1.115 sum -9.642 -7.279 -11.315 16.553 Atomic orbital electron populations 1.21794 0.92215 1.03144 1.03684 1.22825 0.95845 0.80677 1.02477 1.86207 1.13111 1.30142 1.89403 1.21817 0.85720 0.90585 1.01013 1.22139 0.90124 0.99172 1.07088 1.24299 0.96890 0.84048 1.05545 1.16382 0.81051 0.86018 0.78186 1.90875 1.84691 1.12668 1.50244 1.45754 1.04641 1.11038 1.71761 1.22671 0.82571 0.91708 1.01377 0.89100 1.22329 0.98542 0.88895 0.88257 1.44452 1.57308 1.30164 1.00788 1.19022 1.26111 1.09640 0.80486 0.90528 1.24783 1.00081 0.97570 0.98033 1.69779 1.36867 1.18787 1.31124 0.86115 0.77087 0.77652 0.84876 1.21655 1.21727 1.20756 1.21437 0.96274 0.94391 0.86357 1.21842 0.95072 0.96140 0.95637 1.21691 0.97387 0.98761 1.00762 1.21752 1.01160 0.98412 0.97842 1.84945 1.22736 1.18843 1.68481 1.73972 0.90465 1.22232 1.25221 0.91295 0.91375 0.90007 0.91594 0.91496 0.79370 0.76022 0.86789 0.95755 0.93658 0.95682 0.95865 0.92546 0.93006 0.91668 0.92791 0.92675 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.55 6.38 37.16 0.24 0.79 16 3 O -0.28 -3.62 10.21 -18.88 -0.19 -3.81 16 4 C 0.21 2.97 8.00 -16.72 -0.13 2.83 16 5 C -0.16 -2.36 10.97 -38.77 -0.43 -2.79 16 6 C -0.04 -0.65 7.29 -36.36 -0.26 -0.91 16 7 C 0.60 10.67 7.82 -12.46 -0.10 10.57 16 8 O -0.51 -10.42 16.66 5.30 0.09 -10.33 16 9 N -0.68 -11.60 4.67 -52.77 -0.25 -11.84 16 10 C 0.12 2.21 2.56 -65.78 -0.17 2.04 16 11 H 0.09 1.63 7.63 -51.93 -0.40 1.24 16 12 C 0.15 3.43 5.26 -2.53 -0.01 3.42 16 13 N -0.60 -14.61 3.39 -170.08 -0.58 -15.19 16 14 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 15 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 18 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.14 2.73 6.41 -3.06 -0.02 2.71 16 23 C -0.09 -1.34 0.81 -152.67 -0.12 -1.47 16 24 C -0.13 -1.82 8.44 37.16 0.31 -1.51 16 25 C -0.13 -1.67 8.16 37.15 0.30 -1.36 16 26 O 0.12 1.75 11.03 15.52 0.17 1.92 16 27 N -0.39 -5.93 11.50 30.47 0.35 -5.58 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.19 2.42 8.06 -52.49 -0.42 1.99 16 34 H 0.40 6.25 6.64 -40.82 -0.27 5.98 16 35 H 0.11 3.16 5.87 -51.93 -0.30 2.85 16 36 H 0.02 0.62 7.72 -51.93 -0.40 0.22 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.03 0.49 7.84 -51.93 -0.41 0.08 16 39 H 0.02 0.44 7.82 -51.93 -0.41 0.04 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.05 7.45 -51.93 -0.39 0.67 16 43 H 0.05 0.65 6.21 -51.93 -0.32 0.33 16 44 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -31.36 371.20 -6.21 -37.56 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.67 Total: 3.70 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -0.26 Total: 7.09 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.09 Total: -58.82 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.36 -6.21 -37.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974825741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.975 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds