Wall clock time and date at job start Tue Mar 31 2020 14:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47277 * 2 1 4 4 C 1.35723 * 117.00090 * 180.02562 * 3 2 1 5 5 C 1.41858 * 126.78542 * 180.22835 * 4 3 2 6 6 C 1.36660 * 103.81014 * 180.12000 * 5 4 3 7 7 C 1.47549 * 126.87900 * 179.97438 * 6 5 4 8 8 O 1.21579 * 119.99863 * 359.70662 * 7 6 5 9 9 N 1.34776 * 120.00149 * 179.70779 * 7 6 5 10 10 C 1.46499 * 120.00077 * 179.97438 * 9 7 6 11 11 H 1.08994 * 110.88689 * 322.57390 * 10 9 7 12 12 C 1.54907 * 111.00010 * 86.45742 * 10 9 7 13 13 N 1.47420 * 104.83524 * 81.06591 * 12 10 9 14 14 C 1.36932 * 125.65088 * 204.09015 * 13 12 10 15 15 H 1.08001 * 120.00072 * 180.02562 * 14 13 12 16 16 C 1.38815 * 120.00288 * 0.04266 * 14 13 12 17 17 N 1.31619 * 119.99512 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00603 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46911 * 89.99498 * 18 16 14 20 20 H 1.48497 * 109.47297 * 210.00245 * 18 16 14 21 21 H 1.48507 * 109.46877 * 330.00101 * 18 16 14 22 22 C 1.47026 * 108.70428 * 24.12518 * 13 12 10 23 23 C 1.54330 * 107.26840 * 358.94103 * 22 13 12 24 24 C 1.53005 * 110.71673 * 96.16971 * 23 22 13 25 25 C 1.52994 * 110.71826 * 219.44364 * 23 22 13 26 26 O 1.34655 * 106.24493 * 359.67057 * 6 5 4 27 27 N 1.20880 * 111.63083 * 0.22468 * 26 6 5 28 28 H 1.09005 * 109.47612 * 300.00441 * 1 2 3 29 29 H 1.08998 * 109.46845 * 60.00415 * 1 2 3 30 30 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47125 * 239.99292 * 2 1 3 32 32 H 1.08998 * 109.46845 * 119.99585 * 2 1 3 33 33 H 1.07998 * 128.09311 * 0.03771 * 5 4 3 34 34 H 0.97002 * 119.99742 * 0.02562 * 9 7 6 35 35 H 1.08997 * 110.36783 * 322.22310 * 12 10 9 36 36 H 1.08997 * 110.45914 * 199.94961 * 12 10 9 37 37 H 0.97003 * 120.00403 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.88351 * 118.35702 * 22 13 12 39 39 H 1.08998 * 109.88379 * 239.52492 * 22 13 12 40 40 H 1.08998 * 109.47047 * 61.45324 * 24 23 22 41 41 H 1.09000 * 109.46907 * 181.45365 * 24 23 22 42 42 H 1.09001 * 109.47302 * 301.45440 * 24 23 22 43 43 H 1.08994 * 109.47458 * 58.54762 * 25 23 22 44 44 H 1.09010 * 109.46817 * 178.55144 * 25 23 22 45 45 H 1.09000 * 109.47214 * 298.54123 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0452 2.7627 0.0039 6 6 5.3624 2.3987 -0.0016 7 6 6.5303 3.3005 -0.0008 8 8 6.3679 4.5054 0.0000 9 7 7.7770 2.7886 -0.0008 10 6 8.9365 3.6839 -0.0005 11 1 8.7499 4.5616 -0.6192 12 6 9.3212 4.0936 1.4430 13 7 10.1072 2.9589 1.9606 14 6 10.2696 2.6371 3.2817 15 1 10.8681 1.7821 3.5596 16 6 9.6647 3.4095 4.2637 17 7 8.9346 4.4510 3.9249 18 14 9.8856 2.9702 6.0657 19 1 11.0811 3.6686 6.6025 20 1 8.6827 3.3901 6.8287 21 1 10.0686 1.5025 6.1986 22 6 10.6886 2.2303 0.8236 23 6 10.2155 2.9377 -0.4639 24 6 11.2720 3.9288 -0.9564 25 6 9.8814 1.9151 -1.5518 26 8 5.3812 1.0523 -0.0012 27 7 4.2638 0.5911 -0.0006 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.6293 3.7594 0.0089 34 1 7.9065 1.8272 -0.0018 35 1 8.4259 4.2417 2.0467 36 1 9.9256 5.0006 1.4334 37 1 8.5122 4.9911 4.6110 38 1 11.7766 2.2575 0.8831 39 1 10.3407 1.1973 0.8282 40 1 12.1912 3.3926 -1.1922 41 1 10.9069 4.4346 -1.8502 42 1 11.4705 4.6651 -0.1776 43 1 9.1055 1.2403 -1.1903 44 1 9.5257 2.4345 -2.4417 45 1 10.7752 1.3421 -1.7986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974825741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:38 Heat of formation + Delta-G solvation = 0.262130 kcal Electronic energy + Delta-G solvation = -28184.639380 eV Core-core repulsion = 24206.423153 eV Total energy + Delta-G solvation = -3978.216227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.12631 -41.27897 -40.11521 -39.48542 -35.73025 -34.82344 -34.51057 -33.02984 -32.57368 -32.14450 -29.86843 -28.07217 -27.40568 -26.01255 -24.89974 -24.52492 -23.83198 -22.23728 -21.60656 -20.66313 -19.59307 -19.11908 -18.68384 -18.04952 -17.57579 -17.16165 -17.01702 -16.60738 -16.03853 -15.76661 -15.56842 -15.36903 -15.20981 -14.71345 -14.62125 -14.14837 -14.08416 -13.71064 -13.64015 -13.54915 -13.08804 -13.00041 -12.96211 -12.84501 -12.61422 -12.53714 -12.38861 -12.14709 -12.10712 -11.78281 -11.75492 -11.49727 -11.38668 -11.31335 -11.03655 -10.74523 -10.48080 -10.08650 -8.81877 -7.73580 -5.17563 -0.40268 0.92238 1.40037 1.45909 1.46964 1.47580 1.55565 1.89346 2.27720 2.50472 2.93151 3.36241 3.56350 3.57659 3.70897 3.78738 3.91128 3.91862 3.99044 4.08044 4.10035 4.26273 4.43431 4.52500 4.53484 4.73959 4.78221 4.85114 4.85917 4.92642 4.97660 5.04684 5.14352 5.14635 5.23866 5.28271 5.38025 5.50527 5.56664 5.63791 5.84220 5.84913 6.29821 6.34537 6.84206 6.96617 7.12739 7.82300 8.45100 9.26803 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.003781 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.498435 B = 7404.502626 C = 8902.855980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.287 6.287 4 C 0.208 3.792 5 C -0.156 4.156 6 C -0.051 4.051 7 C 0.604 3.396 8 O -0.542 6.542 9 N -0.675 5.675 10 C 0.134 3.866 11 H 0.095 0.905 12 C 0.152 3.848 13 N -0.619 5.619 14 C -0.230 4.230 15 H 0.082 0.918 16 C -0.067 4.067 17 N -0.946 5.946 18 Si 0.973 3.027 19 H -0.288 1.288 20 H -0.300 1.300 21 H -0.268 1.268 22 C 0.135 3.865 23 C -0.071 4.071 24 C -0.126 4.126 25 C -0.128 4.128 26 O 0.115 5.885 27 N -0.398 5.398 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.203 0.797 34 H 0.412 0.588 35 H 0.071 0.929 36 H -0.006 1.006 37 H 0.243 0.757 38 H 0.027 0.973 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 -8.927 -14.255 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.194 6.194 4 C 0.011 3.989 5 C -0.179 4.179 6 C -0.118 4.118 7 C 0.387 3.613 8 O -0.420 6.420 9 N -0.325 5.325 10 C 0.028 3.972 11 H 0.113 0.887 12 C 0.026 3.974 13 N -0.345 5.345 14 C -0.359 4.359 15 H 0.100 0.900 16 C -0.260 4.260 17 N -0.596 5.596 18 Si 0.802 3.198 19 H -0.215 1.215 20 H -0.226 1.226 21 H -0.193 1.193 22 C 0.010 3.990 23 C -0.072 4.072 24 C -0.184 4.184 25 C -0.186 4.186 26 O 0.050 5.950 27 N -0.124 5.124 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.220 0.780 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.012 0.988 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.890 -9.163 -14.059 19.479 hybrid contribution 0.043 0.406 1.598 1.649 sum -9.847 -8.757 -12.461 18.136 Atomic orbital electron populations 1.21828 0.89865 1.04732 1.03804 1.23146 0.97681 0.79261 1.02590 1.86236 1.11999 1.32133 1.89062 1.21892 0.86427 0.90250 1.00355 1.22392 0.89797 1.00011 1.05661 1.23900 0.96456 0.84278 1.07125 1.16560 0.81601 0.85865 0.77259 1.90855 1.85275 1.14160 1.51689 1.45666 1.04212 1.11336 1.71325 1.22390 0.84245 0.92780 0.97761 0.88684 1.21988 0.96154 0.88183 0.91096 1.44685 1.57831 1.30668 1.01281 1.19406 1.25115 1.09285 0.82118 0.89968 1.25564 1.00609 0.97950 1.01856 1.70077 1.38167 1.19918 1.31487 0.85146 0.76368 0.77963 0.80294 1.21522 1.22643 1.19290 1.21687 0.96158 0.94717 0.86400 1.21825 0.93544 0.96724 0.95128 1.21696 0.97920 0.98085 1.00679 1.21736 1.02331 0.97632 0.96892 1.84939 1.22930 1.18382 1.68770 1.73948 0.90526 1.22370 1.25513 0.91438 0.90973 0.87652 0.91072 0.91788 0.78028 0.74965 0.91082 0.98816 0.94759 0.95457 0.94817 0.90432 0.90660 0.94548 0.92509 0.90912 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.05 0.85 6.38 71.98 0.46 1.31 16 3 O -0.29 -7.00 10.21 -90.46 -0.92 -7.92 16 4 C 0.21 5.77 8.00 85.78 0.69 6.46 16 5 C -0.16 -4.42 10.97 22.80 0.25 -4.17 16 6 C -0.05 -1.59 7.29 24.36 0.18 -1.42 16 7 C 0.60 21.51 7.82 86.70 0.68 22.19 16 8 O -0.54 -22.64 16.66 -3.96 -0.07 -22.71 16 9 N -0.68 -22.68 4.67 -439.13 -2.05 -24.74 16 10 C 0.13 4.85 2.56 46.38 0.12 4.97 16 11 H 0.10 3.40 7.63 -2.39 -0.02 3.38 16 12 C 0.15 7.46 5.26 86.86 0.46 7.92 16 13 N -0.62 -30.53 3.39 -692.00 -2.35 -32.88 16 14 C -0.23 -12.66 10.27 84.03 0.86 -11.79 16 15 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 16 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 17 N -0.95 -57.65 10.09 21.65 0.22 -57.44 16 18 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 20 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 C 0.14 5.06 6.41 86.73 0.56 5.62 16 23 C -0.07 -2.10 0.81 -50.99 -0.04 -2.14 16 24 C -0.13 -3.32 8.44 71.98 0.61 -2.72 16 25 C -0.13 -2.72 8.16 71.98 0.59 -2.13 16 26 O 0.11 3.39 11.03 65.70 0.72 4.11 16 27 N -0.40 -11.52 11.50 -172.02 -1.98 -13.50 16 28 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.20 5.04 8.06 -2.91 -0.02 5.01 16 34 H 0.41 12.29 6.64 -92.71 -0.62 11.67 16 35 H 0.07 4.15 5.87 -2.39 -0.01 4.14 16 36 H -0.01 -0.32 7.72 -2.39 -0.02 -0.34 16 37 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.03 1.02 7.84 -2.39 -0.02 1.01 16 39 H 0.03 1.21 7.82 -2.39 -0.02 1.19 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.16 7.45 -2.39 -0.02 1.14 16 43 H 0.06 1.18 6.21 -2.39 -0.01 1.17 16 44 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -70.35 371.20 2.60 -67.75 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.39 Total: 19.18 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 6.60 Total: 19.77 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -6.16 Total: -128.56 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.26 Total: -26.51 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -70.35 2.60 -67.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974825741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.016 kcal (2) G-P(sol) polarization free energy of solvation -70.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds