Wall clock time and date at job start Tue Mar 31 2020 14:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.46964 * 2 1 4 4 C 1.35350 * 116.99959 * 180.02562 * 3 2 1 5 5 N 1.30545 * 125.44872 * 180.02562 * 4 3 2 6 6 C 1.36335 * 108.38701 * 180.02562 * 5 4 3 7 7 C 1.47367 * 126.41501 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99969 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00001 * 359.75081 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27815 * 9 7 6 11 11 H 1.09001 * 109.47173 * 34.99451 * 10 9 7 12 12 C 1.52997 * 109.46898 * 274.99732 * 10 9 7 13 13 C 1.52997 * 109.47394 * 299.99789 * 12 10 9 14 14 C 1.52998 * 109.46894 * 300.00488 * 13 12 10 15 15 C 1.52997 * 109.47499 * 59.99576 * 14 13 12 16 16 H 1.08998 * 109.46814 * 60.00246 * 15 14 13 17 17 N 1.46502 * 109.47145 * 179.97438 * 15 14 13 18 18 C 1.36930 * 120.00105 * 275.00244 * 17 15 14 19 19 H 1.08004 * 120.00134 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99980 * 179.97438 * 18 17 15 21 21 N 1.31622 * 120.00127 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99848 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47484 * 90.00081 * 22 20 18 24 24 H 1.48507 * 109.47134 * 209.99861 * 22 20 18 25 25 H 1.48496 * 109.46987 * 329.99529 * 22 20 18 26 26 C 1.52992 * 109.47094 * 300.00218 * 15 14 13 27 27 C 1.35915 * 107.17196 * 0.25867 * 6 5 4 28 28 O 1.34203 * 125.44479 * 0.02562 * 4 3 2 29 29 H 1.08991 * 109.47303 * 60.00067 * 1 2 3 30 30 H 1.09007 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47272 * 299.99859 * 1 2 3 32 32 H 1.08994 * 109.46970 * 240.00000 * 2 1 3 33 33 H 1.09003 * 109.46922 * 120.00120 * 2 1 3 34 34 H 0.97000 * 119.99736 * 0.27087 * 9 7 6 35 35 H 1.09006 * 109.47495 * 60.00085 * 12 10 9 36 36 H 1.08998 * 109.47338 * 179.97438 * 12 10 9 37 37 H 1.08998 * 109.47567 * 179.97438 * 13 12 10 38 38 H 1.09007 * 109.46730 * 59.99831 * 13 12 10 39 39 H 1.09007 * 109.46895 * 299.99242 * 14 13 12 40 40 H 1.09007 * 109.47112 * 180.02562 * 14 13 12 41 41 H 0.97002 * 119.99402 * 94.99700 * 17 15 14 42 42 H 0.97000 * 120.00081 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.47099 * 299.99571 * 26 15 14 44 44 H 1.08998 * 109.47267 * 180.02562 * 26 15 14 45 45 H 1.07992 * 126.46041 * 179.73273 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 -0.0005 5 7 3.9594 2.6781 -0.0001 6 6 5.3039 2.4524 -0.0015 7 6 6.3630 3.4770 -0.0021 8 8 7.5325 3.1429 -0.0038 9 7 6.0358 4.7845 -0.0064 10 6 7.0886 5.8031 -0.0132 11 1 7.9336 5.4484 -0.6034 12 6 7.5462 6.0731 1.4215 13 6 6.3603 6.5710 2.2500 14 6 5.8162 7.8627 1.6366 15 6 5.3586 7.5927 0.2019 16 1 4.5752 6.8349 0.2069 17 7 4.8370 8.8295 -0.3852 18 6 3.5326 9.1896 -0.1763 19 1 2.8880 8.5617 0.4209 20 6 3.0385 10.3618 -0.7322 21 7 1.7845 10.7077 -0.5318 22 14 4.1532 11.4475 -1.7658 23 1 4.0695 11.0306 -3.1886 24 1 3.7221 12.8629 -1.6385 25 1 5.5539 11.3121 -1.2918 26 6 6.5445 7.0948 -0.6265 27 6 5.4846 1.1053 -0.0086 28 8 4.2630 0.5427 -0.0016 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 5.1031 5.0509 -0.0051 35 1 7.9339 5.1528 1.8586 36 1 8.3299 6.8306 1.4165 37 1 6.6862 6.7628 3.2723 38 1 5.5769 5.8130 2.2550 39 1 6.5996 8.6206 1.6316 40 1 4.9715 8.2177 2.2271 41 1 5.4159 9.3933 -0.9219 42 1 1.4392 11.5266 -0.9205 43 1 7.3279 7.8528 -0.6316 44 1 6.2186 6.9029 -1.6488 45 1 6.4308 0.5847 -0.0155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981199818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:20 Heat of formation + Delta-G solvation = -41.103017 kcal Electronic energy + Delta-G solvation = -27539.098906 eV Core-core repulsion = 23559.088952 eV Total energy + Delta-G solvation = -3980.009954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.67362 -40.06377 -39.23691 -37.96121 -35.16849 -34.57862 -32.98113 -32.32657 -31.30917 -30.05758 -29.41967 -28.28684 -24.79439 -23.92819 -23.40053 -22.67963 -22.03567 -21.02707 -20.82947 -19.31294 -18.91487 -17.83553 -17.55491 -17.46611 -16.64874 -15.95595 -15.56918 -15.46893 -15.19185 -14.79648 -14.50728 -14.03649 -13.78777 -13.65861 -13.59345 -13.32031 -13.18039 -12.78633 -12.62408 -12.24858 -12.20078 -11.92583 -11.80671 -11.74350 -11.22481 -11.12771 -10.95015 -10.92888 -10.87553 -10.41040 -10.23462 -10.19728 -10.04102 -9.66823 -9.52996 -9.04842 -8.87645 -8.80245 -7.23327 -5.73050 -3.08526 0.89676 1.63620 1.86983 2.44450 3.13446 3.23396 3.40256 3.43029 3.48008 4.26379 4.34266 4.35813 4.62424 4.63291 4.66399 4.82779 4.94229 5.06186 5.12583 5.19891 5.25716 5.28040 5.48367 5.50516 5.54961 5.60488 5.65473 5.66391 5.82487 5.90096 6.00081 6.06001 6.18128 6.26611 6.40018 6.43838 6.48929 6.59321 6.68050 6.91844 7.04504 7.25982 7.62432 8.03664 8.16584 8.45964 9.24517 9.96975 10.16655 11.45348 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.003375 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.521139 B = 8294.908344 C =10171.855830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.242 6.242 4 C 0.385 3.615 5 N -0.451 5.451 6 C -0.044 4.044 7 C 0.603 3.397 8 O -0.542 6.542 9 N -0.696 5.696 10 C 0.151 3.849 11 H 0.088 0.912 12 C -0.128 4.128 13 C -0.117 4.117 14 C -0.136 4.136 15 C 0.183 3.817 16 H 0.053 0.947 17 N -0.748 5.748 18 C -0.241 4.241 19 H 0.091 0.909 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.138 4.138 27 C -0.003 4.003 28 O -0.227 6.227 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.415 0.585 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 -23.997 2.144 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.150 6.150 4 C 0.139 3.861 5 N -0.196 5.196 6 C -0.163 4.163 7 C 0.388 3.612 8 O -0.421 6.421 9 N -0.348 5.348 10 C 0.046 3.954 11 H 0.106 0.894 12 C -0.166 4.166 13 C -0.155 4.155 14 C -0.176 4.176 15 C 0.073 3.927 16 H 0.071 0.929 17 N -0.390 5.390 18 C -0.371 4.371 19 H 0.109 0.891 20 C -0.192 4.192 21 N -0.582 5.582 22 Si 0.714 3.286 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.203 1.203 26 C -0.176 4.176 27 C -0.075 4.075 28 O -0.119 6.119 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.951 -23.522 2.196 24.363 hybrid contribution 0.463 0.189 -0.691 0.852 sum 6.414 -23.334 1.505 24.246 Atomic orbital electron populations 1.21821 0.91133 1.03587 1.04498 1.23059 0.96996 0.79356 1.02911 1.86435 1.08810 1.30731 1.89057 1.23324 0.83524 0.81473 0.97794 1.71195 1.03782 1.21420 1.23215 1.21750 0.90364 0.94030 1.10172 1.16646 0.86030 0.81942 0.76579 1.90809 1.17900 1.81602 1.51760 1.46063 1.11828 1.04632 1.72280 1.21015 0.90078 0.87290 0.96976 0.89444 1.21913 0.98478 1.01161 0.95064 1.21513 0.97369 0.98315 0.98321 1.22240 1.00687 0.95886 0.98829 1.20145 0.92816 0.89159 0.90534 0.92878 1.42774 1.10731 1.23702 1.61795 1.19085 0.85740 1.05111 1.27132 0.89148 1.24667 0.95897 0.98021 1.00591 1.69705 1.13503 1.25623 1.49409 0.86558 0.80477 0.80631 0.80896 1.21162 1.21871 1.20326 1.22171 0.99746 0.95530 1.00196 1.24920 0.85844 0.92869 1.03877 1.84389 1.16235 1.39277 1.71983 0.90796 0.89494 0.90813 0.90844 0.90848 0.74725 0.91895 0.91016 0.92652 0.92297 0.92687 0.91554 0.80687 0.93133 0.90482 0.91011 0.74858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.38 16 2 C 0.05 0.33 6.38 37.16 0.24 0.57 16 3 O -0.24 -2.66 10.19 -40.97 -0.42 -3.08 16 4 C 0.39 4.73 8.98 52.22 0.47 5.20 16 5 N -0.45 -6.52 11.10 -11.72 -0.13 -6.65 16 6 C -0.04 -0.58 6.99 -82.98 -0.58 -1.16 16 7 C 0.60 8.70 7.78 -12.55 -0.10 8.60 16 8 O -0.54 -8.56 16.55 5.26 0.09 -8.48 16 9 N -0.70 -9.98 4.23 -54.90 -0.23 -10.21 16 10 C 0.15 2.08 2.78 -67.94 -0.19 1.89 16 11 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 12 C -0.13 -1.68 5.60 -26.73 -0.15 -1.83 16 13 C -0.12 -1.67 5.77 -26.73 -0.15 -1.82 16 14 C -0.14 -2.35 5.50 -26.73 -0.15 -2.50 16 15 C 0.18 3.42 2.60 -67.94 -0.18 3.24 16 16 H 0.05 1.05 6.44 -51.93 -0.33 0.71 16 17 N -0.75 -17.44 4.93 -53.43 -0.26 -17.70 16 18 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 19 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -29.49 13.97 55.49 0.78 -28.72 16 22 Si 0.88 22.19 27.74 -169.99 -4.71 17.48 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 25 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 26 C -0.14 -2.10 5.08 -26.74 -0.14 -2.24 16 27 C 0.00 -0.03 11.93 29.90 0.36 0.33 16 28 O -0.23 -2.31 10.20 -17.78 -0.18 -2.49 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.41 6.29 6.59 -40.82 -0.27 6.02 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.87 7.60 -51.93 -0.39 0.48 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 41 H 0.36 8.27 5.66 -40.82 -0.23 8.04 16 42 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.24 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -34.03 371.21 -6.63 -40.66 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.71 Total: 10.59 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.44 Total: 3.00 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 0.15 Total: -63.28 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.51 Total: -14.05 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.03 -6.63 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981199818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.443 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds