Wall clock time and date at job start Tue Mar 31 2020 14:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42909 * 109.46939 * 2 1 4 4 C 1.35347 * 116.99913 * 180.02562 * 3 2 1 5 5 N 1.30554 * 125.45112 * 180.29954 * 4 3 2 6 6 C 1.36322 * 108.38731 * 180.16236 * 5 4 3 7 7 C 1.47366 * 126.41191 * 179.82433 * 6 5 4 8 8 O 1.21627 * 120.00189 * 179.68761 * 7 6 5 9 9 N 1.34774 * 120.00090 * 359.69143 * 7 6 5 10 10 C 1.46506 * 120.00023 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47068 * 324.99489 * 10 9 7 12 12 C 1.52997 * 109.47277 * 84.99860 * 10 9 7 13 13 C 1.53002 * 109.47092 * 60.00025 * 12 10 9 14 14 C 1.53001 * 109.46963 * 60.00194 * 13 12 10 15 15 C 1.53000 * 109.46886 * 299.99499 * 14 13 12 16 16 H 1.09002 * 109.47398 * 300.00496 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.36940 * 119.99991 * 85.00591 * 17 15 14 19 19 H 1.07998 * 119.99825 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00230 * 180.02562 * 18 17 15 21 21 N 1.31613 * 119.99954 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47253 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47068 * 119.99455 * 22 20 18 25 25 H 1.48501 * 109.46760 * 239.99446 * 22 20 18 26 26 C 1.53002 * 109.47233 * 60.00670 * 15 14 13 27 27 C 1.35914 * 107.17600 * 359.56549 * 6 5 4 28 28 O 1.34204 * 125.44878 * 359.97438 * 4 3 2 29 29 H 1.08994 * 109.47309 * 59.99608 * 1 2 3 30 30 H 1.09003 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46953 * 299.99482 * 1 2 3 32 32 H 1.08998 * 109.46915 * 240.00495 * 2 1 3 33 33 H 1.08994 * 109.47729 * 120.00060 * 2 1 3 34 34 H 0.97001 * 119.99990 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47045 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47140 * 299.99799 * 12 10 9 37 37 H 1.09000 * 109.46497 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47067 * 299.99853 * 13 12 10 39 39 H 1.09001 * 109.46652 * 179.97438 * 14 13 12 40 40 H 1.08992 * 109.47514 * 59.99933 * 14 13 12 41 41 H 0.97002 * 120.00410 * 264.99761 * 17 15 14 42 42 H 0.97001 * 120.00026 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.47075 * 59.99068 * 26 15 14 44 44 H 1.08996 * 109.47407 * 180.02562 * 26 15 14 45 45 H 1.07992 * 126.46068 * 180.22700 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9595 2.6783 0.0049 6 6 5.3038 2.4525 -0.0014 7 6 6.3629 3.4772 -0.0021 8 8 7.5324 3.1431 -0.0023 9 7 6.0356 4.7846 -0.0022 10 6 7.0885 5.8033 -0.0034 11 1 7.9355 5.4512 0.5855 12 6 7.5414 6.0671 -1.4409 13 6 6.3526 6.5614 -2.2675 14 6 5.8106 7.8558 -1.6579 15 6 5.3577 7.5920 -0.2205 16 1 4.5743 6.8341 -0.2196 17 7 4.8382 8.8313 0.3630 18 6 3.5329 9.1905 0.1570 19 1 2.8866 8.5604 -0.4360 20 6 3.0407 10.3650 0.7094 21 7 3.8284 11.1332 1.4316 22 14 1.2603 10.8553 0.4277 23 1 0.5915 9.8299 -0.4127 24 1 0.5622 10.9571 1.7344 25 1 1.2121 12.1691 -0.2630 26 6 6.5464 7.0977 0.6062 27 6 5.4846 1.1054 -0.0012 28 8 4.2630 0.5429 -0.0006 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.1030 5.0511 -0.0023 35 1 8.3244 6.8254 -1.4418 36 1 7.9276 5.1449 -1.8751 37 1 6.6752 6.7489 -3.2917 38 1 5.5692 5.8035 -2.2667 39 1 4.9639 8.2082 -2.2471 40 1 6.5939 8.6137 -1.6587 41 1 5.4187 9.3974 0.8954 42 1 3.4844 11.9537 1.8180 43 1 7.3298 7.8556 0.6053 44 1 6.2237 6.9093 1.6302 45 1 6.4308 0.5849 -0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981199823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:26 Heat of formation + Delta-G solvation = -45.378788 kcal Electronic energy + Delta-G solvation = -27506.095639 eV Core-core repulsion = 23525.900274 eV Total energy + Delta-G solvation = -3980.195366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.67575 -40.00655 -39.24636 -37.86942 -35.16766 -34.42960 -32.94478 -32.34725 -31.09742 -30.01920 -29.33091 -27.81370 -24.78130 -23.94974 -23.62074 -22.68035 -21.95109 -21.09804 -20.79657 -19.29884 -18.75425 -17.84347 -17.50035 -17.07742 -16.62762 -15.96809 -15.50096 -15.46947 -15.18897 -14.76916 -14.34961 -14.09796 -13.67530 -13.65256 -13.40434 -13.34318 -13.20217 -12.99785 -12.42535 -12.22619 -12.04000 -11.83725 -11.76727 -11.68155 -11.13483 -10.96026 -10.94826 -10.85235 -10.70863 -10.34785 -10.18329 -10.10922 -10.09497 -9.68551 -9.47215 -9.02305 -8.85691 -8.76426 -6.91513 -5.72742 -3.01087 0.90392 1.62537 1.87147 2.43938 3.17181 3.25850 3.46369 3.52466 3.54433 4.27765 4.32210 4.33523 4.61655 4.63344 4.65110 4.85236 5.07681 5.14559 5.18035 5.23401 5.25029 5.26262 5.52921 5.54649 5.58417 5.64199 5.74554 5.82405 5.92590 6.02428 6.11725 6.15444 6.30117 6.35311 6.39016 6.57192 6.61829 6.67066 6.77564 7.01372 7.14485 7.26541 7.66144 7.75795 8.20403 8.45935 9.57321 10.14818 10.49502 11.50066 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.003545 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.292931 B = 7897.003835 C =10244.102361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.243 6.243 4 C 0.384 3.616 5 N -0.451 5.451 6 C -0.043 4.043 7 C 0.602 3.398 8 O -0.542 6.542 9 N -0.695 5.695 10 C 0.150 3.850 11 H 0.087 0.913 12 C -0.127 4.127 13 C -0.117 4.117 14 C -0.136 4.136 15 C 0.179 3.821 16 H 0.044 0.956 17 N -0.724 5.724 18 C -0.235 4.235 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.134 4.134 27 C -0.003 4.003 28 O -0.227 6.227 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 -24.761 -4.103 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.151 6.151 4 C 0.138 3.862 5 N -0.196 5.196 6 C -0.162 4.162 7 C 0.387 3.613 8 O -0.421 6.421 9 N -0.347 5.347 10 C 0.045 3.955 11 H 0.105 0.895 12 C -0.165 4.165 13 C -0.155 4.155 14 C -0.176 4.176 15 C 0.069 3.931 16 H 0.062 0.938 17 N -0.364 5.364 18 C -0.366 4.366 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.172 4.172 27 C -0.075 4.075 28 O -0.119 6.119 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.403 -24.286 -4.121 24.673 hybrid contribution -1.014 -0.170 -0.007 1.028 sum 0.389 -24.456 -4.128 24.805 Atomic orbital electron populations 1.21819 0.91171 1.03594 1.04436 1.23057 0.96955 0.79372 1.02942 1.86426 1.08861 1.30729 1.89105 1.23319 0.83502 0.81503 0.97902 1.71186 1.03845 1.21419 1.23193 1.21769 0.90336 0.94065 1.10058 1.16652 0.86022 0.81975 0.76681 1.90810 1.17877 1.81597 1.51803 1.46073 1.11847 1.04620 1.72120 1.21056 0.90030 0.87452 0.96917 0.89526 1.21903 0.98479 1.01077 0.95085 1.21519 0.97333 0.98400 0.98254 1.22273 1.00548 0.95711 0.99090 1.20167 0.92633 0.89775 0.90546 0.93796 1.42418 1.10464 1.22350 1.61203 1.19295 0.87379 1.03748 1.26200 0.91110 1.24723 0.97950 0.97717 1.00620 1.69668 1.34738 1.14889 1.38922 0.86150 0.84944 0.78068 0.77275 1.20529 1.21934 1.21966 1.22134 0.99832 0.95165 1.00099 1.24927 0.85821 0.92880 1.03894 1.84384 1.16245 1.39264 1.71990 0.90853 0.89485 0.90829 0.90839 0.90824 0.74820 0.90966 0.92036 0.92837 0.92514 0.92066 0.92569 0.78290 0.93643 0.90362 0.91125 0.74834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.28 37.16 0.38 -0.34 16 2 C 0.05 0.33 6.38 37.16 0.24 0.56 16 3 O -0.24 -2.62 10.19 -40.96 -0.42 -3.04 16 4 C 0.38 4.68 8.98 52.22 0.47 5.15 16 5 N -0.45 -6.52 11.10 -11.72 -0.13 -6.65 16 6 C -0.04 -0.58 6.99 -82.99 -0.58 -1.16 16 7 C 0.60 8.88 7.78 -12.55 -0.10 8.79 16 8 O -0.54 -8.78 16.55 5.25 0.09 -8.69 16 9 N -0.70 -10.28 4.23 -54.89 -0.23 -10.52 16 10 C 0.15 2.17 2.78 -67.93 -0.19 1.98 16 11 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 12 C -0.13 -1.75 5.60 -26.73 -0.15 -1.90 16 13 C -0.12 -1.72 5.77 -26.73 -0.15 -1.88 16 14 C -0.14 -2.43 5.50 -26.73 -0.15 -2.58 16 15 C 0.18 3.48 2.60 -67.93 -0.18 3.31 16 16 H 0.04 0.89 6.44 -51.93 -0.33 0.55 16 17 N -0.72 -17.97 5.12 -53.42 -0.27 -18.25 16 18 C -0.23 -6.52 9.93 -15.06 -0.15 -6.67 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 22 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 C -0.13 -2.19 5.08 -26.73 -0.14 -2.32 16 27 C 0.00 -0.03 11.93 29.90 0.36 0.33 16 28 O -0.23 -2.31 10.20 -17.76 -0.18 -2.49 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.41 6.44 6.59 -40.82 -0.27 6.17 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.86 7.60 -51.93 -0.39 0.46 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.24 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -33.06 374.33 -6.99 -40.05 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.75 Total: 11.15 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.43 Total: 2.77 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: 0.09 Total: -62.97 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.51 Total: -14.23 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.06 -6.99 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981199823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.329 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds