Wall clock time and date at job start Tue Mar 31 2020 14:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47199 * 2 1 4 4 C 1.35360 * 116.99990 * 179.97438 * 3 2 1 5 5 N 1.30545 * 125.44436 * 179.97438 * 4 3 2 6 6 C 1.36328 * 108.38352 * 180.02562 * 5 4 3 7 7 C 1.47373 * 126.41625 * 179.97438 * 6 5 4 8 8 O 1.21626 * 120.00171 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99832 * 0.02880 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.53006 * 109.46711 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47445 * 59.99695 * 13 12 10 15 15 C 1.53002 * 109.47092 * 300.00075 * 14 13 12 16 16 H 1.09002 * 109.47067 * 299.99853 * 15 14 13 17 17 N 1.46500 * 109.46766 * 180.02562 * 15 14 13 18 18 C 1.36937 * 120.00410 * 85.00153 * 17 15 14 19 19 H 1.08000 * 119.99361 * 359.97438 * 18 17 15 20 20 C 1.38801 * 120.00292 * 179.97438 * 18 17 15 21 21 N 1.31626 * 120.00297 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00422 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46609 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47207 * 119.99716 * 22 20 18 25 25 H 1.48498 * 109.47533 * 240.00299 * 22 20 18 26 26 C 1.53000 * 109.46840 * 155.00060 * 10 9 7 27 27 C 1.35917 * 107.17081 * 0.23046 * 6 5 4 28 28 O 1.34192 * 125.44632 * 0.04239 * 4 3 2 29 29 H 1.09008 * 109.47306 * 300.00675 * 1 2 3 30 30 H 1.09007 * 109.46824 * 60.00098 * 1 2 3 31 31 H 1.08993 * 109.47391 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47200 * 239.99852 * 2 1 3 33 33 H 1.09001 * 109.47058 * 119.99514 * 2 1 3 34 34 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 36 36 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 37 37 H 1.09001 * 109.46726 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.46589 * 299.99365 * 13 12 10 39 39 H 1.09002 * 109.47045 * 59.99942 * 14 13 12 40 40 H 1.09000 * 109.47140 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99491 * 264.99884 * 17 15 14 42 42 H 0.96993 * 120.00252 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.47194 * 299.99493 * 26 10 9 44 44 H 1.08992 * 109.47399 * 59.99666 * 26 10 9 45 45 H 1.08004 * 126.45658 * 179.74842 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9594 2.6781 0.0001 6 6 5.3039 2.4523 0.0004 7 6 6.3631 3.4770 -0.0005 8 8 7.5325 3.1428 -0.0007 9 7 6.0358 4.7844 -0.0010 10 6 7.0888 5.8030 -0.0024 11 1 7.9348 5.4503 -0.5922 12 6 7.5438 6.0681 1.4342 13 6 8.6430 7.1324 1.4328 14 6 8.0996 8.4261 0.8229 15 6 7.6446 8.1609 -0.6136 16 1 8.4907 7.8086 -1.2035 17 7 7.1249 9.3999 -1.1977 18 6 7.9831 10.2977 -1.7745 19 1 9.0431 10.0925 -1.7984 20 6 7.4906 11.4712 -2.3283 21 7 6.1986 11.7211 -2.2996 22 14 8.6613 12.6963 -3.1146 23 1 10.0519 12.1843 -3.0175 24 1 8.2995 12.8800 -4.5430 25 1 8.5634 13.9985 -2.4076 26 6 6.5458 7.0969 -0.6123 27 6 5.4845 1.1052 -0.0043 28 8 4.2630 0.5427 0.0003 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.1032 5.0509 -0.0012 35 1 6.6977 6.4209 2.0240 36 1 7.9306 5.1464 1.8687 37 1 8.9668 7.3215 2.4562 38 1 9.4891 6.7799 0.8428 39 1 7.2535 8.7784 1.4129 40 1 8.8826 9.1844 0.8224 41 1 6.1728 9.5842 -1.1758 42 1 5.8544 12.5410 -2.6869 43 1 6.2216 6.9081 -1.6357 44 1 5.6998 7.4496 -0.0225 45 1 6.4308 0.5846 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981199824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:29 Heat of formation + Delta-G solvation = -48.820394 kcal Electronic energy + Delta-G solvation = -26753.442425 eV Core-core repulsion = 22773.097820 eV Total energy + Delta-G solvation = -3980.344605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.78126 -39.92051 -39.33233 -37.89139 -35.27486 -34.64477 -33.25461 -32.45800 -31.09135 -30.03862 -29.20316 -27.74564 -24.83587 -24.04069 -23.63947 -22.78072 -21.86983 -21.25363 -20.35600 -19.73675 -19.04354 -17.94913 -17.55270 -16.98124 -16.64970 -16.14914 -16.05827 -15.38178 -14.96458 -14.72109 -14.36167 -14.00689 -13.79501 -13.67203 -13.48892 -13.44905 -13.30533 -13.09451 -12.66104 -12.32995 -12.11828 -12.05574 -11.86453 -11.24551 -11.10901 -10.96212 -10.89646 -10.86190 -10.67584 -10.43599 -10.30718 -10.16555 -10.09114 -9.71439 -9.58560 -9.10525 -8.90052 -8.82170 -6.92178 -5.73316 -3.01835 0.81444 1.51731 1.75940 2.33419 3.05896 3.17186 3.45850 3.51695 3.53744 4.16636 4.22174 4.23631 4.54190 4.55605 4.61236 4.75795 5.02581 5.08671 5.12625 5.14468 5.16600 5.37293 5.42780 5.48054 5.54497 5.65631 5.73641 5.79034 5.92616 6.01866 6.07300 6.18472 6.27431 6.34223 6.37702 6.55815 6.57783 6.66333 6.77620 7.01232 7.14206 7.17466 7.55441 7.74691 8.12026 8.45423 9.56544 10.14371 10.49126 11.49482 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.002253 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.346467 B =12424.876424 C =13435.618385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.244 6.244 4 C 0.384 3.616 5 N -0.454 5.454 6 C -0.044 4.044 7 C 0.602 3.398 8 O -0.536 6.536 9 N -0.702 5.702 10 C 0.148 3.852 11 H 0.090 0.910 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.184 3.816 16 H 0.049 0.951 17 N -0.724 5.724 18 C -0.235 4.235 19 H 0.071 0.929 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.130 4.130 27 C 0.000 4.000 28 O -0.227 6.227 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.409 0.591 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.229 -27.230 7.629 29.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.153 6.153 4 C 0.137 3.863 5 N -0.200 5.200 6 C -0.163 4.163 7 C 0.387 3.613 8 O -0.414 6.414 9 N -0.351 5.351 10 C 0.044 3.956 11 H 0.108 0.892 12 C -0.163 4.163 13 C -0.153 4.153 14 C -0.177 4.177 15 C 0.073 3.927 16 H 0.067 0.933 17 N -0.365 5.365 18 C -0.366 4.366 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.169 4.169 27 C -0.072 4.072 28 O -0.118 6.118 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.245 0.755 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.810 -26.687 7.528 28.807 hybrid contribution 0.014 0.067 -0.390 0.396 sum -7.796 -26.621 7.138 28.642 Atomic orbital electron populations 1.21819 0.91142 1.03682 1.04344 1.23066 0.96944 0.79308 1.03038 1.86403 1.08884 1.30847 1.89140 1.23297 0.83499 0.81551 0.97922 1.71130 1.03891 1.21503 1.23475 1.21775 0.90259 0.94109 1.10175 1.16647 0.86060 0.81904 0.76728 1.90837 1.17861 1.81460 1.51212 1.46004 1.11461 1.04884 1.72735 1.21122 0.90157 0.87172 0.97153 0.89186 1.21894 0.99230 0.99101 0.96074 1.21484 0.97548 0.95733 1.00501 1.22294 1.00853 0.95870 0.98731 1.20090 0.93891 0.86569 0.92132 0.93325 1.42413 1.07395 1.18165 1.68491 1.19293 0.90363 0.97955 1.29021 0.91075 1.24743 0.95910 0.98529 1.01959 1.69673 1.11063 1.26480 1.50984 0.86132 0.79975 0.81400 0.78797 1.20547 1.21938 1.21953 1.22089 1.00073 0.93647 1.01069 1.24972 0.85826 0.92896 1.03526 1.84386 1.16261 1.39209 1.71927 0.90894 0.90861 0.89416 0.90764 0.90796 0.75495 0.91917 0.92113 0.92480 0.92129 0.92625 0.91883 0.78303 0.93619 0.91183 0.91538 0.74739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 10.28 37.16 0.38 -0.12 16 2 C 0.05 0.26 6.38 37.16 0.24 0.49 16 3 O -0.24 -2.24 10.19 -41.00 -0.42 -2.65 16 4 C 0.38 4.11 8.98 52.22 0.47 4.58 16 5 N -0.45 -5.77 11.10 -11.71 -0.13 -5.90 16 6 C -0.04 -0.54 6.99 -82.98 -0.58 -1.12 16 7 C 0.60 8.44 7.78 -12.54 -0.10 8.34 16 8 O -0.54 -8.62 16.55 5.25 0.09 -8.53 16 9 N -0.70 -9.54 5.07 -54.89 -0.28 -9.82 16 10 C 0.15 2.17 2.45 -67.93 -0.17 2.00 16 11 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 12 C -0.12 -1.74 5.50 -26.73 -0.15 -1.88 16 13 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.14 -2.45 5.50 -26.73 -0.15 -2.59 16 15 C 0.18 3.63 2.77 -67.95 -0.19 3.44 16 16 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 17 N -0.72 -18.10 5.12 -53.45 -0.27 -18.37 16 18 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 22 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 26 C -0.13 -2.15 4.86 -26.75 -0.13 -2.28 16 27 C 0.00 0.00 11.93 29.90 0.36 0.36 16 28 O -0.23 -2.07 10.20 -17.72 -0.18 -2.25 16 29 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.41 5.22 8.33 -40.82 -0.34 4.88 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.24 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -33.21 378.76 -7.14 -40.35 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.94 Total: 9.36 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -0.42 Total: 2.17 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.04 Total: -61.72 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.51 Total: -13.44 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.21 -7.14 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981199824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.475 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds